Mercurial > repos > iuc > hyphy_fubar

comparison macros.xml @ 17:3db56014322f draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit f6cabbd9eb2eea9f5d44fe9836cc5f6d6087a839"
author iuc
date Fri, 30 Oct 2020 16:24:16 +0000
parents 600647840e87
children a6da5885846e
comparison
equal deleted inserted replaced
16:47145f568cd6 17:3db56014322f
105 <citations> 105 <citations>
106 <citation type="doi">10.1093/molbev/msz197</citation> 106 <citation type="doi">10.1093/molbev/msz197</citation>
107 <yield/> 107 <yield/>
108 </citations> 108 </citations>
109 </xml> 109 </xml>
110 <token name="@VERSION@">2.5.17</token> 110 <token name="@VERSION@">2.5.21</token>
111 <xml name="requirements"> 111 <xml name="requirements">
112 <requirements> 112 <requirements>
113 <requirement type="package" version="@VERSION@">hyphy</requirement> 113 <requirement type="package" version="@VERSION@">hyphy</requirement>
114 <yield/> 114 <yield/>
115 </requirements> 115 </requirements>
116 </xml> 116 </xml>
117 <token name="@HYPHYMPI@">\${GALAXY_MPIRUN:-mpirun -np \${GALAXY_SLOTS:-1}} HYPHYMPI</token> 117 <token name="@HYPHYMPI@">\${GALAXY_MPIRUN:-mpirun -mca orte_tmpdir_base "\${TMPDIR:-.}" -np \${GALAXY_SLOTS:-1}} HYPHYMPI</token>
118 <token name="@CATCH_MPIERR@"><![CDATA[ 118 <token name="@CATCH_MPIERR@"><![CDATA[
119 EC=\$? ; 119 EC=\$? ;
120 if [ \$EC -ne 0 ] ; then 120 if [ \$EC -ne 0 ] ; then
121 cat errors.log.mpinode0 >&2 ; 121 cat errors.log.mpinode0 >&2 ;
122 fi ; 122 fi ;