Mercurial > repos > iuc > hyphy_fubar
diff test-data/summary/nsp8-segment.json @ 30:b2096be81d82 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit ec5db8349483b2cd46f9da23abe6cefcf65bc714"
author | iuc |
---|---|
date | Sat, 03 Jul 2021 08:59:46 +0000 |
parents | 8741542f9bc8 |
children |
line wrap: on
line diff
--- a/test-data/summary/nsp8-segment.json Fri Jun 18 15:35:37 2021 +0000 +++ b/test-data/summary/nsp8-segment.json Sat Jul 03 08:59:46 2021 +0000 @@ -1,6 +1,205 @@ { "nsp8": { - "map": [], + "map": [ + 12091, + 12094, + 12097, + 12100, + 12103, + 12106, + 12109, + 12112, + 12115, + 12118, + 12121, + 12124, + 12127, + 12130, + 12133, + 12136, + 12139, + 12142, + 12145, + 12148, + 12151, + 12154, + 12157, + 12160, + 12163, + 12166, + 12169, + 12172, + 12175, + 12178, + 12181, + 12184, + 12187, + 12190, + 12193, + 12196, + 12199, + 12202, + 12205, + 12208, + 12211, + 12214, + 12217, + 12220, + 12223, + 12226, + 12229, + 12232, + 12235, + 12238, + 12241, + 12244, + 12247, + 12250, + 12253, + 12256, + 12259, + 12262, + 12265, + 12268, + 12271, + 12274, + 12277, + 12280, + 12283, + 12286, + 12289, + 12292, + 12295, + 12298, + 12301, + 12304, + 12307, + 12310, + 12313, + 12316, + 12319, + 12322, + 12325, + 12328, + 12331, + 12334, + 12337, + 12340, + 12343, + 12346, + 12349, + 12352, + 12355, + 12358, + 12361, + 12364, + 12367, + 12370, + 12373, + 12376, + 12379, + 12382, + 12385, + 12388, + 12391, + 12394, + 12397, + 12400, + 12403, + 12406, + 12409, + 12412, + 12415, + 12418, + 12421, + 12424, + 12427, + 12430, + 12433, + 12436, + 12439, + 12442, + 12445, + 12448, + 12451, + 12454, + 12457, + 12460, + 12463, + 12466, + 12469, + 12472, + 12475, + 12478, + 12481, + 12484, + 12487, + 12490, + 12493, + 12496, + 12499, + 12502, + 12505, + 12508, + 12511, + 12514, + 12517, + 12520, + 12523, + 12526, + 12529, + 12532, + 12535, + 12538, + 12541, + 12544, + 12547, + 12550, + 12553, + 12556, + 12559, + 12562, + 12565, + 12568, + 12571, + 12574, + 12577, + 12580, + 12583, + 12586, + 12589, + 12592, + 12595, + 12598, + 12601, + 12604, + 12607, + 12610, + 12613, + 12616, + 12619, + 12622, + 12625, + 12628, + 12631, + 12634, + 12637, + 12640, + 12643, + 12646, + 12649, + 12652, + 12655, + 12658, + 12661, + 12664, + 12667, + 12670, + 12673, + 12676, + 12679, + 12682 + ], "rates": { "mean-omega": { "B-1-617": 21.18256593595067, @@ -109,7 +308,869 @@ "p": 0.3056667368082906 }, "tree": "(REFERENCE,(gb_MT226610_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_CHN_KMS1_2020_Segment_null_Host_Human,epi_isl_1589870_hCoV_19_India_WB_1931501009078_2021)Node20,gb_MT326179_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_WA_UW_1572_2020_Segment_null_Host_Human,epi_isl_1589885_hCoV_19_India_WB_1931300250528_2021,(epi_isl_1615709_hCoV_19_England_CAMC_14E792B_2021,gb_MW523870_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_LA_CDC_STM_A100279_2021_Segment_null_Host_Human)Node4,epi_isl_1592421_hCoV_19_USA_MA_CDC_STM_000044850_2021,gb_MW345265_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_MD_MDH_0448_2020_Segment_null_Host_Human,gb_MW525063_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_MI_CDC_STM_0000013_D10_2021_Segment_null_Host_Human,epi_isl_1181694_hCoV_19_USA_DE_DHSS_B1064373_2021,gb_MW585851_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_GA_CDC_STM_000004152_2021_Segment_null_Host_Human,(gb_MW583322_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_AL_CDC_STM_000001665_2021_Segment_null_Host_Human,gb_MW562702_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_UT_UPHL_2102128070_2020_Segment_null_Host_Human,epi_isl_1384851_hCoV_19_India_MH_NCCS_ND13683_2021)Node38,epi_isl_1357692_hCoV_19_India_WB_1931500870015_2021,gb_MW486334_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_WI_UW_2535_2020_Segment_null_Host_Human,epi_isl_1533793_hCoV_19_India_MH_NCCS_CHN21027888_2021,gb_LR757997_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_UNKNOWN_LR757997_Segment_null_Host_Human,epi_isl_1415270_hCoV_19_India_MH_NCCS_BJ2_2021,epi_isl_1543980_hCoV_19_Singapore_490_2021,epi_isl_1632256_hCoV_19_England_RAND_14E1D70_2021,gb_MT745751_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_BGD_DNAS_isl_BRB_2020_Segment_null_Host_Human,epi_isl_1573247_hCoV_19_Germany_un_RKI_I_068985_2021,gb_MW585867_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_CA_CDC_STM_000003621_2021_Segment_null_Host_Human,gb_MW540189_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_MA_MASPHL_01215_2020_Segment_null_Host_Human,epi_isl_1652118_hCoV_19_Singapore_575_2021,epi_isl_1652105_hCoV_19_Singapore_561_2021,gb_MW593074_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_MN_MDH_2645_2021_Segment_null_Host_Human,gb_MW154124_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_AUS_VIC7567_2020_Segment_null_Host_Human,epi_isl_1416968_hCoV_19_Guadeloupe_IPP06229_2021,epi_isl_1544068_hCoV_19_India_MH_NCCS_RT231527_2021)", - "tree_tags": {}, + "tree_tags": { + "REFERENCE": [ + "Reference", + false, + 0, + [], + [] + ], + "gb_MT226610_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_CHN_KMS1_2020_Segment_null_Host_Human": [ + "Reference", + false, + 0.02664074934348415, + [], + [] + ], + "epi_isl_1589870_hCoV_19_India_WB_1931501009078_2021": [ + "Reference", + false, + 0, + [], + [] + ], + "Node20": [ + "Reference", + true, + 0.001731141176898499, + [ + 12199 + ], + [] + ], + "gb_MT326179_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_WA_UW_1572_2020_Segment_null_Host_Human": [ + "Reference", + false, + 0.005234957209780722, + [], + [] + ], + "epi_isl_1589885_hCoV_19_India_WB_1931300250528_2021": [ + "Reference", + false, + 0.001731048067785009, + [], + [ + 12457 + ] + ], + "epi_isl_1615709_hCoV_19_England_CAMC_14E792B_2021": [ + "Reference", + false, + 0, + [], + [] + ], + "gb_MW523870_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_LA_CDC_STM_A100279_2021_Segment_null_Host_Human": [ + "Reference", + false, + 0.003467134004764108, + [], + [] + ], + "Node4": [ + "Reference", + true, + 0.001730401012235807, + [ + 12487 + ], + [ + 12487 + ] + ], + "epi_isl_1592421_hCoV_19_USA_MA_CDC_STM_000044850_2021": [ + "Reference", + false, + 0.001731056498022235, + [], + [ + 12526 + ] + ], + "gb_MW345265_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_MD_MDH_0448_2020_Segment_null_Host_Human": [ + "Reference", + false, + 0.003467572164636923, + [], + [] + ], + "gb_MW525063_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_MI_CDC_STM_0000013_D10_2021_Segment_null_Host_Human": [ + "Reference", + false, + 0.005208678680963088, + [], + [] + ], + "epi_isl_1181694_hCoV_19_USA_DE_DHSS_B1064373_2021": [ + "Reference", + false, + 0, + [], + [] + ], + "gb_MW585851_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_GA_CDC_STM_000004152_2021_Segment_null_Host_Human": [ + "Reference", + false, + 0.003469467349330688, + [], + [] + ], + "gb_MW583322_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_AL_CDC_STM_000001665_2021_Segment_null_Host_Human": [ + "Reference", + false, + 0.003467824865270607, + [], + [] + ], + "gb_MW562702_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_UT_UPHL_2102128070_2020_Segment_null_Host_Human": [ + "Reference", + false, + 0.00173293384624849, + [], + [] + ], + "epi_isl_1384851_hCoV_19_India_MH_NCCS_ND13683_2021": [ + "Reference", + false, + 0, + [], + [] + ], + "Node38": [ + "Reference", + true, + 0.001731477826576347, + [], + [] + ], + "epi_isl_1357692_hCoV_19_India_WB_1931500870015_2021": [ + "Reference", + false, + 0.001729315851762792, + [], + [] + ], + "gb_MW486334_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_WI_UW_2535_2020_Segment_null_Host_Human": [ + "Reference", + false, + 0.005199356347141997, + [], + [] + ], + "epi_isl_1533793_hCoV_19_India_MH_NCCS_CHN21027888_2021": [ + "Reference", + false, + 0.001730674922882492, + [], + [] + ], + "gb_LR757997_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_UNKNOWN_LR757997_Segment_null_Host_Human": [ + "Reference", + false, + 0.01048699203960315, + [], + [] + ], + "epi_isl_1415270_hCoV_19_India_MH_NCCS_BJ2_2021": [ + "Reference", + false, + 0.00172931598734411, + [], + [ + 12289 + ] + ], + "epi_isl_1543980_hCoV_19_Singapore_490_2021": [ + "Reference", + false, + 0.001731607586790447, + [], + [ + 12103 + ] + ], + "epi_isl_1632256_hCoV_19_England_RAND_14E1D70_2021": [ + "Reference", + false, + 0.001731056555105113, + [], + [] + ], + "gb_MT745751_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_BGD_DNAS_isl_BRB_2020_Segment_null_Host_Human": [ + "Reference", + false, + 0.003472818889570806, + [], + [] + ], + "epi_isl_1573247_hCoV_19_Germany_un_RKI_I_068985_2021": [ + "Reference", + false, + 0.001729315915842957, + [], + [] + ], + "gb_MW585867_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_CA_CDC_STM_000003621_2021_Segment_null_Host_Human": [ + "Reference", + false, + 0.003467572314956491, + [], + [] + ], + "gb_MW540189_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_MA_MASPHL_01215_2020_Segment_null_Host_Human": [ + "Reference", + false, + 0.003466116800966422, + [], + [] + ], + "epi_isl_1652118_hCoV_19_Singapore_575_2021": [ + "Reference", + false, + 0.001731018144003603, + [], + [ + 12151 + ] + ], + "epi_isl_1652105_hCoV_19_Singapore_561_2021": [ + "Reference", + false, + 0.001731808653435227, + [], + [ + 12682 + ] + ], + "gb_MW593074_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_MN_MDH_2645_2021_Segment_null_Host_Human": [ + "Reference", + false, + 0.003470395082681897, + [], + [] + ], + "gb_MW154124_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_AUS_VIC7567_2020_Segment_null_Host_Human": [ + "Reference", + false, + 0.003466116800821911, + [], + [] + ], + "epi_isl_1416968_hCoV_19_Guadeloupe_IPP06229_2021": [ + "Reference", + false, + 0.001731017634562806, + [], + [ + 12115 + ] + ], + "epi_isl_1544068_hCoV_19_India_MH_NCCS_RT231527_2021": [ + "Reference", + false, + 0.001731017818709538, + [], + [] + ] + }, + "subs": { + "12091": { + "Node35": "CAG" + }, + "12094": { + "Node35": "CAG" + }, + "12097": { + "Node35": "CAG" + }, + "12100": { + "Node35": "CAG" + }, + "12103": { + "Node35": "CAG" + }, + "12106": { + "Node35": "CAG" + }, + "12109": { + "Node35": "CAG" + }, + "12112": { + "Node35": "CAG" + }, + "12115": { + "Node35": "CAG" + }, + "12118": { + "Node35": "CAG" + }, + "12121": { + "Node35": "CAG" + }, + "12124": { + "Node35": "CAG" + }, + "12127": { + "Node35": "CAG" + }, + "12130": { + "Node35": "CAG" + }, + "12133": { + "Node35": "CAG" + }, + "12136": { + "Node35": "CAG" + }, + "12139": { + "Node35": "CAG" + }, + "12142": { + "Node35": "CAG" + }, + "12145": { + "Node35": "CAG" + }, + "12148": { + "Node35": "CAG" + }, + "12151": { + "Node35": "CAG" + }, + "12154": { + "Node35": "CAG" + }, + "12157": { + "Node35": "CAG" + }, + "12160": { + "Node35": "CAG" + }, + "12163": { + "Node35": "CAG" + }, + "12166": { + "Node35": "CAG" + }, + "12169": { + "Node35": "CAG" + }, + "12172": { + "Node35": "CAG" + }, + "12175": { + "Node35": "CAG" + }, + "12178": { + "Node35": "CAG" + }, + "12181": { + "Node35": "CAG" + }, + "12184": { + "Node35": "CAG" + }, + "12187": { + "Node35": "CAG" + }, + "12190": { + "Node35": "CAG" + }, + "12193": { + "Node35": "CAG" + }, + "12196": { + "Node35": "CAG" + }, + "12199": { + "Node35": "CAG" + }, + "12202": { + "Node35": "CAG" + }, + "12205": { + "Node35": "CAG" + }, + "12208": { + "Node35": "CAG" + }, + "12211": { + "Node35": "CAG" + }, + "12214": { + "Node35": "CAG" + }, + "12217": { + "Node35": "CAG" + }, + "12220": { + "Node35": "CAG" + }, + "12223": { + "Node35": "CAG" + }, + "12226": { + "Node35": "CAG" + }, + "12229": { + "Node35": "CAG" + }, + "12232": { + "Node35": "CAG" + }, + "12235": { + "Node35": "CAG" + }, + "12238": { + "Node35": "CAG" + }, + "12241": { + "Node35": "CAG" + }, + "12244": { + "Node35": "CAG" + }, + "12247": { + "Node35": "CAG" + }, + "12250": { + "Node35": "CAG" + }, + "12253": { + "Node35": "CAG" + }, + "12256": { + "Node35": "CAG" + }, + "12259": { + "Node35": "CAG" + }, + "12262": { + "Node35": "CAG" + }, + "12265": { + "Node35": "CAG" + }, + "12268": { + "Node35": "CAG" + }, + "12271": { + "Node35": "CAG" + }, + "12274": { + "Node35": "CAG" + }, + "12277": { + "Node35": "CAG" + }, + "12280": { + "Node35": "CAG" + }, + "12283": { + "Node35": "CAG" + }, + "12286": { + "Node35": "CAG" + }, + "12289": { + "Node35": "CAG" + }, + "12292": { + "Node35": "CAG" + }, + "12295": { + "Node35": "CAG" + }, + "12298": { + "Node35": "CAG" + }, + "12301": { + "Node35": "CAG" + }, + "12304": { + "Node35": "CAG" + }, + "12307": { + "Node35": "CAG" + }, + "12310": { + "Node35": "CAG" + }, + "12313": { + "Node35": "CAG" + }, + "12316": { + "Node35": "CAG" + }, + "12319": { + "Node35": "CAG" + }, + "12322": { + "Node35": "CAG" + }, + "12325": { + "Node35": "CAG" + }, + "12328": { + "Node35": "CAG" + }, + "12331": { + "Node35": "CAG" + }, + "12334": { + "Node35": "CAG" + }, + "12337": { + "Node35": "CAG" + }, + "12340": { + "Node35": "CAG" + }, + "12343": { + "Node35": "CAG" + }, + "12346": { + "Node35": "CAG" + }, + "12349": { + "Node35": "CAG" + }, + "12352": { + "Node35": "CAG" + }, + "12355": { + "Node35": "CAG" + }, + "12358": { + "Node35": "CAG" + }, + "12361": { + "Node35": "CAG" + }, + "12364": { + "Node35": "CAG" + }, + "12367": { + "Node35": "CAG" + }, + "12370": { + "Node35": "CAG" + }, + "12373": { + "Node35": "CAG" + }, + "12376": { + "Node35": "CAG" + }, + "12379": { + "Node35": "CAG" + }, + "12382": { + "Node35": "CAG" + }, + "12385": { + "Node35": "CAG" + }, + "12388": { + "Node35": "CAG" + }, + "12391": { + "Node35": "CAG" + }, + "12394": { + "Node35": "CAG" + }, + "12397": { + "Node35": "CAG" + }, + "12400": { + "Node35": "CAG" + }, + "12403": { + "Node35": "CAG" + }, + "12406": { + "Node35": "CAG" + }, + "12409": { + "Node35": "CAG" + }, + "12412": { + "Node35": "CAG" + }, + "12415": { + "Node35": "CAG" + }, + "12418": { + "Node35": "CAG" + }, + "12421": { + "Node35": "CAG" + }, + "12424": { + "Node35": "CAG" + }, + "12427": { + "Node35": "CAG" + }, + "12430": { + "Node35": "CAG" + }, + "12433": { + "Node35": "CAG" + }, + "12436": { + "Node35": "CAG" + }, + "12439": { + "Node35": "CAG" + }, + "12442": { + "Node35": "CAG" + }, + "12445": { + "Node35": "CAG" + }, + "12448": { + "Node35": "CAG" + }, + "12451": { + "Node35": "CAG" + }, + "12454": { + "Node35": "CAG" + }, + "12457": { + "Node35": "CAG" + }, + "12460": { + "Node35": "CAG" + }, + "12463": { + "Node35": "CAG" + }, + "12466": { + "Node35": "CAG" + }, + "12469": { + "Node35": "CAG" + }, + "12472": { + "Node35": "CAG" + }, + "12475": { + "Node35": "CAG" + }, + "12478": { + "Node35": "CAG" + }, + "12481": { + "Node35": "CAG" + }, + "12484": { + "Node35": "CAG" + }, + "12487": { + "Node35": "CAG" + }, + "12490": { + "Node35": "CAG" + }, + "12493": { + "Node35": "CAG" + }, + "12496": { + "Node35": "CAG" + }, + "12499": { + "Node35": "CAG" + }, + "12502": { + "Node35": "CAG" + }, + "12505": { + "Node35": "CAG" + }, + "12508": { + "Node35": "CAG" + }, + "12511": { + "Node35": "CAG" + }, + "12514": { + "Node35": "CAG" + }, + "12517": { + "Node35": "CAG" + }, + "12520": { + "Node35": "CAG" + }, + "12523": { + "Node35": "CAG" + }, + "12526": { + "Node35": "CAG" + }, + "12529": { + "Node35": "CAG" + }, + "12532": { + "Node35": "CAG" + }, + "12535": { + "Node35": "CAG" + }, + "12538": { + "Node35": "CAG" + }, + "12541": { + "Node35": "CAG" + }, + "12544": { + "Node35": "CAG" + }, + "12547": { + "Node35": "CAG" + }, + "12550": { + "Node35": "CAG" + }, + "12553": { + "Node35": "CAG" + }, + "12556": { + "Node35": "CAG" + }, + "12559": { + "Node35": "CAG" + }, + "12562": { + "Node35": "CAG" + }, + "12565": { + "Node35": "CAG" + }, + "12568": { + "Node35": "CAG" + }, + "12571": { + "Node35": "CAG" + }, + "12574": { + "Node35": "CAG" + }, + "12577": { + "Node35": "CAG" + }, + "12580": { + "Node35": "CAG" + }, + "12583": { + "Node35": "CAG" + }, + "12586": { + "Node35": "CAG" + }, + "12589": { + "Node35": "CAG" + }, + "12592": { + "Node35": "CAG" + }, + "12595": { + "Node35": "CAG" + }, + "12598": { + "Node35": "CAG" + }, + "12601": { + "Node35": "CAG" + }, + "12604": { + "Node35": "CAG" + }, + "12607": { + "Node35": "CAG" + }, + "12610": { + "Node35": "CAG" + }, + "12613": { + "Node35": "CAG" + }, + "12616": { + "Node35": "CAG" + }, + "12619": { + "Node35": "CAG" + }, + "12622": { + "Node35": "CAG" + }, + "12625": { + "Node35": "CAG" + }, + "12628": { + "Node35": "CAG" + }, + "12631": { + "Node35": "CAG" + }, + "12634": { + "Node35": "CAG" + }, + "12637": { + "Node35": "CAG" + }, + "12640": { + "Node35": "CAG" + }, + "12643": { + "Node35": "CAG" + }, + "12646": { + "Node35": "CAG" + }, + "12649": { + "Node35": "CAG" + }, + "12652": { + "Node35": "CAG" + }, + "12655": { + "Node35": "CAG" + }, + "12658": { + "Node35": "CAG" + }, + "12661": { + "Node35": "CAG" + }, + "12664": { + "Node35": "CAG" + }, + "12667": { + "Node35": "CAG" + }, + "12670": { + "Node35": "CAG" + }, + "12673": { + "Node35": "CAG" + }, + "12676": { + "Node35": "CAG" + }, + "12679": { + "Node35": "CAG" + }, + "12682": { + "Node35": "CAG" + } + }, "prime-properties": [ "Factor I bipolar", "Factor II secondary structure",