Mercurial > repos > iuc > hyphy_fubar
view test-data/summary/nsp8-segment.json @ 33:55a45d4c31dc draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 4bb2092ac089e709bdc0ec3c3680f47e17be509a"
author | iuc |
---|---|
date | Wed, 30 Mar 2022 00:18:55 +0000 |
parents | b2096be81d82 |
children |
line wrap: on
line source
{ "nsp8": { "map": [ 12091, 12094, 12097, 12100, 12103, 12106, 12109, 12112, 12115, 12118, 12121, 12124, 12127, 12130, 12133, 12136, 12139, 12142, 12145, 12148, 12151, 12154, 12157, 12160, 12163, 12166, 12169, 12172, 12175, 12178, 12181, 12184, 12187, 12190, 12193, 12196, 12199, 12202, 12205, 12208, 12211, 12214, 12217, 12220, 12223, 12226, 12229, 12232, 12235, 12238, 12241, 12244, 12247, 12250, 12253, 12256, 12259, 12262, 12265, 12268, 12271, 12274, 12277, 12280, 12283, 12286, 12289, 12292, 12295, 12298, 12301, 12304, 12307, 12310, 12313, 12316, 12319, 12322, 12325, 12328, 12331, 12334, 12337, 12340, 12343, 12346, 12349, 12352, 12355, 12358, 12361, 12364, 12367, 12370, 12373, 12376, 12379, 12382, 12385, 12388, 12391, 12394, 12397, 12400, 12403, 12406, 12409, 12412, 12415, 12418, 12421, 12424, 12427, 12430, 12433, 12436, 12439, 12442, 12445, 12448, 12451, 12454, 12457, 12460, 12463, 12466, 12469, 12472, 12475, 12478, 12481, 12484, 12487, 12490, 12493, 12496, 12499, 12502, 12505, 12508, 12511, 12514, 12517, 12520, 12523, 12526, 12529, 12532, 12535, 12538, 12541, 12544, 12547, 12550, 12553, 12556, 12559, 12562, 12565, 12568, 12571, 12574, 12577, 12580, 12583, 12586, 12589, 12592, 12595, 12598, 12601, 12604, 12607, 12610, 12613, 12616, 12619, 12622, 12625, 12628, 12631, 12634, 12637, 12640, 12643, 12646, 12649, 12652, 12655, 12658, 12661, 12664, 12667, 12670, 12673, 12676, 12679, 12682 ], "rates": { "mean-omega": { "B-1-617": 21.18256593595067, "Reference": 0, "background": 0.5156677174296214 }, "T": { "B-1-617": 0.003269500911862614, "Reference": 0.001919664151147453, "background": 0.10664581418249912 }, "relax": { "B-1-617": [ { "omega": 0, "proportion": 0.3229316344832856 }, { "omega": 0, "proportion": 0.6561871399951409 }, { "omega": 887.8019782663979, "proportion": 0.02088122552157349 } ], "Reference": [ { "omega": 0, "proportion": 0.3229316344832856 }, { "omega": 0, "proportion": 0.6561871399951409 }, { "omega": 887.8019782663979, "proportion": 0.02088122552157349 } ], "background": [ { "omega": 0, "proportion": 0.3229316344832856 }, { "omega": 0, "proportion": 0.6561871399951409 }, { "omega": 2.618905128891877, "proportion": 0.02088122552157349 } ] }, "busted": { "Background": { "0": { "omega": 0, "proportion": 0.02741862862724963 }, "1": { "omega": 0.1719979491289183, "proportion": 0.8111826871363725 }, "2": { "omega": 2.232058479326601, "proportion": 0.1613986842363778 } }, "Synonymous site-to-site rates": { "0": { "proportion": 0, "rate": 0.9502886367487763 }, "1": { "proportion": 1, "rate": 1 }, "2": { "proportion": 0, "rate": 1.059678592887729 } }, "Test": { "0": { "omega": 0.9993684330797956, "proportion": 0 }, "1": { "omega": 0.999368433118802, "proportion": 0 }, "2": { "omega": 25.32658549655282, "proportion": 1 } } } }, "relax": { "p": 0.07260318641568564, "K": 7.051367447513434 }, "busted": { "p": 0.3056667368082906 }, "tree": "(REFERENCE,(gb_MT226610_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_CHN_KMS1_2020_Segment_null_Host_Human,epi_isl_1589870_hCoV_19_India_WB_1931501009078_2021)Node20,gb_MT326179_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_WA_UW_1572_2020_Segment_null_Host_Human,epi_isl_1589885_hCoV_19_India_WB_1931300250528_2021,(epi_isl_1615709_hCoV_19_England_CAMC_14E792B_2021,gb_MW523870_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_LA_CDC_STM_A100279_2021_Segment_null_Host_Human)Node4,epi_isl_1592421_hCoV_19_USA_MA_CDC_STM_000044850_2021,gb_MW345265_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_MD_MDH_0448_2020_Segment_null_Host_Human,gb_MW525063_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_MI_CDC_STM_0000013_D10_2021_Segment_null_Host_Human,epi_isl_1181694_hCoV_19_USA_DE_DHSS_B1064373_2021,gb_MW585851_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_GA_CDC_STM_000004152_2021_Segment_null_Host_Human,(gb_MW583322_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_AL_CDC_STM_000001665_2021_Segment_null_Host_Human,gb_MW562702_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_UT_UPHL_2102128070_2020_Segment_null_Host_Human,epi_isl_1384851_hCoV_19_India_MH_NCCS_ND13683_2021)Node38,epi_isl_1357692_hCoV_19_India_WB_1931500870015_2021,gb_MW486334_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_WI_UW_2535_2020_Segment_null_Host_Human,epi_isl_1533793_hCoV_19_India_MH_NCCS_CHN21027888_2021,gb_LR757997_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_UNKNOWN_LR757997_Segment_null_Host_Human,epi_isl_1415270_hCoV_19_India_MH_NCCS_BJ2_2021,epi_isl_1543980_hCoV_19_Singapore_490_2021,epi_isl_1632256_hCoV_19_England_RAND_14E1D70_2021,gb_MT745751_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_BGD_DNAS_isl_BRB_2020_Segment_null_Host_Human,epi_isl_1573247_hCoV_19_Germany_un_RKI_I_068985_2021,gb_MW585867_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_CA_CDC_STM_000003621_2021_Segment_null_Host_Human,gb_MW540189_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_MA_MASPHL_01215_2020_Segment_null_Host_Human,epi_isl_1652118_hCoV_19_Singapore_575_2021,epi_isl_1652105_hCoV_19_Singapore_561_2021,gb_MW593074_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_MN_MDH_2645_2021_Segment_null_Host_Human,gb_MW154124_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_AUS_VIC7567_2020_Segment_null_Host_Human,epi_isl_1416968_hCoV_19_Guadeloupe_IPP06229_2021,epi_isl_1544068_hCoV_19_India_MH_NCCS_RT231527_2021)", "tree_tags": { "REFERENCE": [ "Reference", false, 0, [], [] ], "gb_MT226610_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_CHN_KMS1_2020_Segment_null_Host_Human": [ "Reference", false, 0.02664074934348415, [], [] ], "epi_isl_1589870_hCoV_19_India_WB_1931501009078_2021": [ "Reference", false, 0, [], [] ], "Node20": [ "Reference", true, 0.001731141176898499, [ 12199 ], [] ], "gb_MT326179_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_WA_UW_1572_2020_Segment_null_Host_Human": [ "Reference", false, 0.005234957209780722, [], [] ], "epi_isl_1589885_hCoV_19_India_WB_1931300250528_2021": [ "Reference", false, 0.001731048067785009, [], [ 12457 ] ], "epi_isl_1615709_hCoV_19_England_CAMC_14E792B_2021": [ "Reference", false, 0, [], [] ], "gb_MW523870_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_LA_CDC_STM_A100279_2021_Segment_null_Host_Human": [ "Reference", false, 0.003467134004764108, [], [] ], "Node4": [ "Reference", true, 0.001730401012235807, [ 12487 ], [ 12487 ] ], "epi_isl_1592421_hCoV_19_USA_MA_CDC_STM_000044850_2021": [ "Reference", false, 0.001731056498022235, [], [ 12526 ] ], "gb_MW345265_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_MD_MDH_0448_2020_Segment_null_Host_Human": [ "Reference", false, 0.003467572164636923, [], [] ], "gb_MW525063_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_MI_CDC_STM_0000013_D10_2021_Segment_null_Host_Human": [ "Reference", false, 0.005208678680963088, [], [] ], "epi_isl_1181694_hCoV_19_USA_DE_DHSS_B1064373_2021": [ "Reference", false, 0, [], [] ], "gb_MW585851_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_GA_CDC_STM_000004152_2021_Segment_null_Host_Human": [ "Reference", false, 0.003469467349330688, [], [] ], "gb_MW583322_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_AL_CDC_STM_000001665_2021_Segment_null_Host_Human": [ "Reference", false, 0.003467824865270607, [], [] ], "gb_MW562702_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_UT_UPHL_2102128070_2020_Segment_null_Host_Human": [ "Reference", false, 0.00173293384624849, [], [] ], "epi_isl_1384851_hCoV_19_India_MH_NCCS_ND13683_2021": [ "Reference", false, 0, [], [] ], "Node38": [ "Reference", true, 0.001731477826576347, [], [] ], "epi_isl_1357692_hCoV_19_India_WB_1931500870015_2021": [ "Reference", false, 0.001729315851762792, [], [] ], "gb_MW486334_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_WI_UW_2535_2020_Segment_null_Host_Human": [ "Reference", false, 0.005199356347141997, [], [] ], "epi_isl_1533793_hCoV_19_India_MH_NCCS_CHN21027888_2021": [ "Reference", false, 0.001730674922882492, [], [] ], "gb_LR757997_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_UNKNOWN_LR757997_Segment_null_Host_Human": [ "Reference", false, 0.01048699203960315, [], [] ], "epi_isl_1415270_hCoV_19_India_MH_NCCS_BJ2_2021": [ "Reference", false, 0.00172931598734411, [], [ 12289 ] ], "epi_isl_1543980_hCoV_19_Singapore_490_2021": [ "Reference", false, 0.001731607586790447, [], [ 12103 ] ], "epi_isl_1632256_hCoV_19_England_RAND_14E1D70_2021": [ "Reference", false, 0.001731056555105113, [], [] ], "gb_MT745751_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_BGD_DNAS_isl_BRB_2020_Segment_null_Host_Human": [ "Reference", false, 0.003472818889570806, [], [] ], "epi_isl_1573247_hCoV_19_Germany_un_RKI_I_068985_2021": [ "Reference", false, 0.001729315915842957, [], [] ], "gb_MW585867_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_CA_CDC_STM_000003621_2021_Segment_null_Host_Human": [ "Reference", false, 0.003467572314956491, [], [] ], "gb_MW540189_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_MA_MASPHL_01215_2020_Segment_null_Host_Human": [ "Reference", false, 0.003466116800966422, [], [] ], "epi_isl_1652118_hCoV_19_Singapore_575_2021": [ "Reference", false, 0.001731018144003603, [], [ 12151 ] ], "epi_isl_1652105_hCoV_19_Singapore_561_2021": [ "Reference", false, 0.001731808653435227, [], [ 12682 ] ], "gb_MW593074_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_MN_MDH_2645_2021_Segment_null_Host_Human": [ "Reference", false, 0.003470395082681897, [], [] ], "gb_MW154124_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_AUS_VIC7567_2020_Segment_null_Host_Human": [ "Reference", false, 0.003466116800821911, [], [] ], "epi_isl_1416968_hCoV_19_Guadeloupe_IPP06229_2021": [ "Reference", false, 0.001731017634562806, [], [ 12115 ] ], "epi_isl_1544068_hCoV_19_India_MH_NCCS_RT231527_2021": [ "Reference", false, 0.001731017818709538, [], [] ] }, "subs": { "12091": { "Node35": "CAG" }, "12094": { "Node35": "CAG" }, "12097": { "Node35": "CAG" }, "12100": { "Node35": "CAG" }, "12103": { "Node35": "CAG" }, "12106": { "Node35": "CAG" }, "12109": { "Node35": "CAG" }, "12112": { "Node35": "CAG" }, "12115": { "Node35": "CAG" }, "12118": { "Node35": "CAG" }, "12121": { "Node35": "CAG" }, "12124": { "Node35": "CAG" }, "12127": { "Node35": "CAG" }, "12130": { "Node35": "CAG" }, "12133": { "Node35": "CAG" }, "12136": { "Node35": "CAG" }, "12139": { "Node35": "CAG" }, "12142": { "Node35": "CAG" }, "12145": { "Node35": "CAG" }, "12148": { "Node35": "CAG" }, "12151": { "Node35": "CAG" }, "12154": { "Node35": "CAG" }, "12157": { "Node35": "CAG" }, "12160": { "Node35": "CAG" }, "12163": { "Node35": "CAG" }, "12166": { "Node35": "CAG" }, "12169": { "Node35": "CAG" }, "12172": { "Node35": "CAG" }, "12175": { "Node35": "CAG" }, "12178": { "Node35": "CAG" }, "12181": { "Node35": "CAG" }, "12184": { "Node35": "CAG" }, "12187": { "Node35": "CAG" }, "12190": { "Node35": "CAG" }, "12193": { "Node35": "CAG" }, "12196": { "Node35": "CAG" }, "12199": { "Node35": "CAG" }, "12202": { "Node35": "CAG" }, "12205": { "Node35": "CAG" }, "12208": { "Node35": "CAG" }, "12211": { "Node35": "CAG" }, "12214": { "Node35": "CAG" }, "12217": { "Node35": "CAG" }, "12220": { "Node35": "CAG" }, "12223": { "Node35": "CAG" }, "12226": { "Node35": "CAG" }, "12229": { "Node35": "CAG" }, "12232": { "Node35": "CAG" }, "12235": { "Node35": "CAG" }, "12238": { "Node35": "CAG" }, "12241": { "Node35": "CAG" }, "12244": { "Node35": "CAG" }, "12247": { "Node35": "CAG" }, "12250": { "Node35": "CAG" }, "12253": { "Node35": "CAG" }, "12256": { "Node35": "CAG" }, "12259": { "Node35": "CAG" }, "12262": { "Node35": "CAG" }, "12265": { "Node35": "CAG" }, "12268": { "Node35": "CAG" }, "12271": { "Node35": "CAG" }, "12274": { "Node35": "CAG" }, "12277": { "Node35": "CAG" }, "12280": { "Node35": "CAG" }, "12283": { "Node35": "CAG" }, "12286": { "Node35": "CAG" }, "12289": { "Node35": "CAG" }, "12292": { "Node35": "CAG" }, "12295": { "Node35": "CAG" }, "12298": { "Node35": "CAG" }, "12301": { "Node35": "CAG" }, "12304": { "Node35": "CAG" }, "12307": { "Node35": "CAG" }, "12310": { "Node35": "CAG" }, "12313": { "Node35": "CAG" }, "12316": { "Node35": "CAG" }, "12319": { "Node35": "CAG" }, "12322": { "Node35": "CAG" }, "12325": { "Node35": "CAG" }, "12328": { "Node35": "CAG" }, "12331": { "Node35": "CAG" }, "12334": { "Node35": "CAG" }, "12337": { "Node35": "CAG" }, "12340": { "Node35": "CAG" }, "12343": { "Node35": "CAG" }, "12346": { "Node35": "CAG" }, "12349": { "Node35": "CAG" }, "12352": { "Node35": "CAG" }, "12355": { "Node35": "CAG" }, "12358": { "Node35": "CAG" }, "12361": { "Node35": "CAG" }, "12364": { "Node35": "CAG" }, "12367": { "Node35": "CAG" }, "12370": { "Node35": "CAG" }, "12373": { "Node35": "CAG" }, "12376": { "Node35": "CAG" }, "12379": { "Node35": "CAG" }, "12382": { "Node35": "CAG" }, "12385": { "Node35": "CAG" }, "12388": { "Node35": "CAG" }, "12391": { "Node35": "CAG" }, "12394": { "Node35": "CAG" }, "12397": { "Node35": "CAG" }, "12400": { "Node35": "CAG" }, "12403": { "Node35": "CAG" }, "12406": { "Node35": "CAG" }, "12409": { "Node35": "CAG" }, "12412": { "Node35": "CAG" }, "12415": { "Node35": "CAG" }, "12418": { "Node35": "CAG" }, "12421": { "Node35": "CAG" }, "12424": { "Node35": "CAG" }, "12427": { "Node35": "CAG" }, "12430": { "Node35": "CAG" }, "12433": { "Node35": "CAG" }, "12436": { "Node35": "CAG" }, "12439": { "Node35": "CAG" }, "12442": { "Node35": "CAG" }, "12445": { "Node35": "CAG" }, "12448": { "Node35": "CAG" }, "12451": { "Node35": "CAG" }, "12454": { "Node35": "CAG" }, "12457": { "Node35": "CAG" }, "12460": { "Node35": "CAG" }, "12463": { "Node35": "CAG" }, "12466": { "Node35": "CAG" }, "12469": { "Node35": "CAG" }, "12472": { "Node35": "CAG" }, "12475": { "Node35": "CAG" }, "12478": { "Node35": "CAG" }, "12481": { "Node35": "CAG" }, "12484": { "Node35": "CAG" }, "12487": { "Node35": "CAG" }, "12490": { "Node35": "CAG" }, "12493": { "Node35": "CAG" }, "12496": { "Node35": "CAG" }, "12499": { "Node35": "CAG" }, "12502": { "Node35": "CAG" }, "12505": { "Node35": "CAG" }, "12508": { "Node35": "CAG" }, "12511": { "Node35": "CAG" }, "12514": { "Node35": "CAG" }, "12517": { "Node35": "CAG" }, "12520": { "Node35": "CAG" }, "12523": { "Node35": "CAG" }, "12526": { "Node35": "CAG" }, "12529": { "Node35": "CAG" }, "12532": { "Node35": "CAG" }, "12535": { "Node35": "CAG" }, "12538": { "Node35": "CAG" }, "12541": { "Node35": "CAG" }, "12544": { "Node35": "CAG" }, "12547": { "Node35": "CAG" }, "12550": { "Node35": "CAG" }, "12553": { "Node35": "CAG" }, "12556": { "Node35": "CAG" }, "12559": { "Node35": "CAG" }, "12562": { "Node35": "CAG" }, "12565": { "Node35": "CAG" }, "12568": { "Node35": "CAG" }, "12571": { "Node35": "CAG" }, "12574": { "Node35": "CAG" }, "12577": { "Node35": "CAG" }, "12580": { "Node35": "CAG" }, "12583": { "Node35": "CAG" }, "12586": { "Node35": "CAG" }, "12589": { "Node35": "CAG" }, "12592": { "Node35": "CAG" }, "12595": { "Node35": "CAG" }, "12598": { "Node35": "CAG" }, "12601": { "Node35": "CAG" }, "12604": { "Node35": "CAG" }, "12607": { "Node35": "CAG" }, "12610": { "Node35": "CAG" }, "12613": { "Node35": "CAG" }, "12616": { "Node35": "CAG" }, "12619": { "Node35": "CAG" }, "12622": { "Node35": "CAG" }, "12625": { "Node35": "CAG" }, "12628": { "Node35": "CAG" }, "12631": { "Node35": "CAG" }, "12634": { "Node35": "CAG" }, "12637": { "Node35": "CAG" }, "12640": { "Node35": "CAG" }, "12643": { "Node35": "CAG" }, "12646": { "Node35": "CAG" }, "12649": { "Node35": "CAG" }, "12652": { "Node35": "CAG" }, "12655": { "Node35": "CAG" }, "12658": { "Node35": "CAG" }, "12661": { "Node35": "CAG" }, "12664": { "Node35": "CAG" }, "12667": { "Node35": "CAG" }, "12670": { "Node35": "CAG" }, "12673": { "Node35": "CAG" }, "12676": { "Node35": "CAG" }, "12679": { "Node35": "CAG" }, "12682": { "Node35": "CAG" } }, "prime-properties": [ "Factor I bipolar", "Factor II secondary structure", "Factor III volume", "Factor IV composition", "Factor V charge" ], "bgm": [] } }