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view test-data/gard-out1.json @ 24:c5ef306c2041 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
author iuc
date Tue, 20 Apr 2021 10:24:45 +0000
parents 0f108ee932ea
children cd41e7a4d35f
line wrap: on
line source

{
 "analysis":{
   "authors":"Sergei L Kosakovsky Pond",
   "citation":"**Automated Phylogenetic Detection of Recombination Using a Genetic Algorithm**, _Mol Biol Evol 23(10), 1891–1901",
   "contact":"spond@temple.edu",
   "info":"GARD : Genetic Algorithms for Recombination Detection. Implements a heuristic\n    approach to screening alignments of sequences for recombination, by using the CHC genetic algorithm to search for phylogenetic\n    incongruence among different partitions of the data. The number of partitions is determined using a step-up procedure, while the\n    placement of breakpoints is searched for with the GA. The best fitting model (based on c-AIC) is returned; and additional post-hoc\n    tests run to distinguish topological incongruence from rate-variation.",
   "requirements":"A sequence alignment.",
   "version":"0.1"
  },
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