# HG changeset patch
# User iuc
# Date 1582240247 18000
# Node ID 3285fd1f4bde19706218b6ed458341c716f1d08c
# Parent bece0bad8e89bc4b9aa7e043f6029fb48be28173
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 8d5ae1d04c43988fdcc458f4f08376a15e72db8e"
diff -r bece0bad8e89 -r 3285fd1f4bde hyphy_fubar.xml
--- a/hyphy_fubar.xml Mon Feb 17 14:52:11 2020 -0500
+++ b/hyphy_fubar.xml Thu Feb 20 18:10:47 2020 -0500
@@ -12,29 +12,19 @@
--alignment ./fubar_input.fa
--tree ./fubar_input.nhx
--code '$gencodeid'
- --method '$posterior'
+ --method '$posteriorEstimationMethod.method'
--grid '$grid_points'
- --chains '$mcmc'
- --chain-length '$chain_length'
- --burn-in '$samples'
- --samples '$samples_per_chain'
+ @posteriorEstimationMethod_cmd@
--concentration_parameter '$concentration'
> '$fubar_log'
]]>
-
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-
-
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-
-
-
+
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+
+
@@ -49,13 +39,91 @@
500 sequences) datasets for which other methods have prohibitive runtimes, unless you have access to a computer cluster.
+
+Brief description
+-----------------
-Results: By exploiting some commonly used approximations, FUBAR can perform detection of positive selection under a model that allows rich site- to-site rate variation about 30 to 50 times faster than existing random effects likelihood methods, and 10 to 30 times faster than existing fixed effects likelihood methods. We introduce an ultra-fast MCMC routine that allows a flexible prior specification, with no parametric constraints on the prior shape. Furthermore, our method allows us to visualize Bayesian inference for each site, revealing the model supported by the data.
+Perform a Fast Unbiased AppRoximate Bayesian (FUBAR) analysis of a
+coding sequence alignment to determine whether some sites have been
+subject to pervasive purifying or diversifying selection. There are three methods
+for estimating the posterior distribution of
+grid weights: collapsed Gibbs MCMC (faster), 0-th order Variation
+Bayes approximation (fastest), full Metropolis-Hastings (slowest).
+
+Input
+-----
+
+1. A *FASTA* sequence alignment.
+2. A phylogenetic tree in the *Newick* format
+
+Note: the names of sequences in the alignment must match the names of the sequences in the tree.
+
+
+Output
+------
+
+A JSON file with analysis results (http://hyphy.org/resources/json-fields.pdf).
-See the online documentation_ for more information.
+A custom visualization module for viewing these results is available (see http://vision.hyphy.org/FUBAR for an example)
+
+Further reading
+---------------
+
+http://hyphy.org/methods/selection-methods/#FUBAR
+
+
+Tool options
+------------
+::
+
+
+ --code Which genetic code to use
+
+ --grid The number of grid points
+ Smaller : faster
+ Larger : more precise posterior estimation but slower
+ default value: 20
-.. _documentation: http://hyphy.org/methods/selection-methods/#fubar
+ --method Inference method to use
+ Variational-Bayes : 0-th order Variational Bayes approximation; fastest [default]
+ Metropolis-Hastings : Full Metropolis-Hastings MCMC algorithm; orignal method [slowest]
+ Collapsed-Gibbs : Collapsed Gibbs sampler [intermediate speed]
+
+
+ --chains How many MCMC chains to run (does not apply to Variational-Bayes)
+ default value: 5
+
+ --chain-length MCMC chain length (does not apply to Variational-Bayes)
+ default value: 2,000,000
+
+ --burn-in MCMC chain burn in (does not apply to Variational-Bayes)
+ default value: 1,000,000
+
+ --samples MCMC samples to draw (does not apply to Variational-Bayes)
+ default value: 1,000
+
+ --concentration_parameter
+ The concentration parameter of the Dirichlet prior
+ default value: 0.5
+
+
]]>
10.1093/molbev/mst030
diff -r bece0bad8e89 -r 3285fd1f4bde macros.xml
--- a/macros.xml Mon Feb 17 14:52:11 2020 -0500
+++ b/macros.xml Thu Feb 20 18:10:47 2020 -0500
@@ -6,6 +6,8 @@
+
-
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ #if $posteriorEstimationMethod.method != "Variational-Bayes"
+ --chains '$posteriorEstimationMethod.chains'
+ --chain-length '$posteriorEstimationMethod.chain_length'
+ --burn-in '$posteriorEstimationMethod.samples'
+ --samples '$posteriorEstimationMethod.samples_per_chain'
+ #end if
+
+
+
+
+
+
+
+
+
@@ -62,27 +97,28 @@
-
+
- 10.1093/bioinformatics/bti079
+ 10.1093/molbev/msz197
- 2.5.3
+ 2.5.4
-
- hyphy
+ hyphy
\${GALAXY_MPIRUN:-mpirun -np \${GALAXY_SLOTS:-1}} HYPHYMPI
-
-
+
+
diff -r bece0bad8e89 -r 3285fd1f4bde test-data/gard-in1.fa
--- a/test-data/gard-in1.fa Mon Feb 17 14:52:11 2020 -0500
+++ b/test-data/gard-in1.fa Thu Feb 20 18:10:47 2020 -0500
@@ -1,735 +1,120 @@
->TREESPARROW_HENAN_1_2004
-ATGGAGAAAATAGTGCTTCTTCGTGCAATGATCAATCTTGTTAAAAGTGA
-TCAGATTGGCGTTGGTTACCATGCAGACTACTCGACAGAGCAGGGTGACA
-CAATAATGGAAAAGAACGTTACTGTTACACATGCTCAAGACATATTGGAA
-AAGACACACAACGGGAAGCTCTGCGACCTAGATGGAGTGAAGCCTCTAAT
-TTTGAAAGATTGTAGTGTAGCTGGATGGCTCCTCGGAAACCCAATGTGTG
-ACGAATTCATCAATGTGCCGGAGTGGTCTTACATAGTGGAGAAGGCCAGT
-CCAGCCAATGACCTCTGTTACCCAGGGGATTTCAACGACTATGAAGAACT
-GAAACACCTATTGAGCAGAATAAACCATTTTGAAAAAATTCAGATCATCC
-CCAAAAGTTCTTGGTCCGATCATGAAGCCTCATCAGGGGTGAGCTCAGCA
-TGTCCATACCTGGGGAAGCCCTCCTTTTTCAGAAATGTGGTATGGCTTAT
-CAAAAAGAACAGTACATACCCAACAATAAAGAGGGGCTACAATAATACCA
-ACCCAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCG
-GCAGAGCAGATAAAGCTCTATCAAAACCCAACCACCTATATTTCCGTTGG
-AACATCAACACTAAACCAGAGATTGGTACCAAAAATAGCTACTAGATCCA
-AAGTAAATGGGCAAAGTGGAAGAATGGAGTTCTTCTGGACAATTTTAAAG
-CCGAATGACGCTATCAACTTCGAGAGTAATGGAAATTTCATTGCTCCAGA
-ATATGCATACCAAATTGTCAAGAAAGGGGACTCAGCAATTATGAAAAGTG
-AATTGGAATATGGTAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCG
-ATAAACTCTAGTATGCCATTCCACAACATACACCCTCTCACCATCGGGGA
-ATGCCCCAAATATGTGAAATCAAACAGATTAGTCCTTGCGACAGGGCTCA
-GAAATAGCCCTCAAAGAGAGAGAAGAAGAAAAAAGAGAGGACTATTTGGA
-GCTATAGCAGGTTTTATAGAGGGAGGATGGCAGGGAATGGTAGATGGTTG
-GTATGGGTACCACCATAGCAATGAGCAGGGGAGTGGATACGCTGCAGACA
-AAGAATCCACTCAAAAAGCAATAGATGGAGTCACCAATAAGGTCAACTCG
-ATCATTGACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAA
-TAACTTAGAAAGGAGAATAGAAAATTTAAACAAGAAGATGGAGGACGGAT
-TCCTAGATGTCTGGACTTATAATGCTGAACTTCTGGTTCTCATGGAAAAT
-GAGAGAACTCTAGACTTTCATGACTCAAATGTCAAGAACCTTTACGAAAA
-GGTCCGACTACAACTTAGGGATAATGCAAAGGAGCTGGGTAACGGTTGTT
-TCGAGTTCTATCACAAATGTGATAATGAATGTATGGAAAGTGTAAAAAAC
-GGAACGTATGACTACCCGCAGTATTCAGAAGAAGCAAGACTAAACAGAGA
-GGAAATAAGTGGAGTAAAATTGGAATCAATAGGAACTTACCAAATACTGT
-CAATTTATTCAACAGTGGCGAGTTCCCTAGCACTGGCAATCATGGTAGCT
-GGTCTATCTTTATGGATGTGCTCCAATGGATCGTTACAATGCAGAATT
->HUMAN_VIETNAM_CL105_2005
-ATGGAGAAAATAGTGCTTCTTTTTGCGATAGTCAGTCTTGTTAAAAGTGA
-TCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACA
-CAATAATGGAAAAGAACGTTACTGTTACACATGCCCAAGACATACTGGAA
-AAGACACACAACGGGAAGCTCTGCGATCTAGATGGAGTGAAGCCTCTAAT
-TTTGAGAGATTGTAGTGTAGCTGGATGGCTACTCGGAAACCCAATGTGTG
-ACGAATTCATCAATGTGCCGGAATGGTCTTACATAGTGGAGAAGGTCAAT
-CCAGTCAATGACCTCTGTTACCCAGGGGTTTTCAATGACTATGAAGAATT
-GAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCC
-CCAAAAGTTCTTGGTCCAGTCATGAAGCCTCATTAGGGGTGAGCTCAGTA
-TGTCCATACCAGGGAAAGTCCTCCTTTTTCAGAAATGTGGTATGGCTTAT
-CAAAAAGAACAGTACATACCCAACAATAAAGAGGAGCTACAATAATACCA
-ACCAAGAAGATCTTTTGGTAATATGGGGGATTCATCATCCTAATGATGCG
-GCAGAGCAGATAAAGCTCTATCAAAACCCAACCACCTATATTTCCGTTGG
-GACATCAACACTAAACCAGAGATTGGTACCAAGAATAGCTACTAGATCCA
-AAGTAAACGGGCAAAGTGGGAGGATGGAGTTCTTCTGGACAATTTTAAAA
-CCGAATGATGCAATCAACTTCGAGAGTAATGGAAATTTCATTGCTCCAGA
-ATATGCATACAAGATTGTCAAGAAAGGGGACTCAACAATTATGAAAAGTG
-AATTGGAATATGGTAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCG
-ATAAACTCTAGTATGCCATTCCACAATATACACCCTCTCACCATCGGGGA
-ATGCCCCAAATATGTGAAATCAAACAGATTAGTCCTTGCGACTGGGCTCA
-GAAATAGCCCTCAAAAAGAGAGAAGAAGAAAAAAGAGAGGATTATTTGGA
-GCTATAGCAGGTTTTATAGAGGGAGGATGGCAGGGAATGGTAGATGGTTG
-GTATGGGTACCACCATAGCAATGAGCAGGGGAGTGGGTACGCTGCAGACA
-AAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCG
-ATCATTGACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAA
-CAACTTAGAAAGGAGAATAGAGAATTTAAACAAGAAGATGGAAGACGGGT
-TCCTAGATGTCTGGACTTATAATGCTGAACTTCTGGTTCTCATGGAAAAT
-GAGAGAACTCTAGACTTTCATGACTCAAATGTCAAGAACCTTTACGACAA
-GGTCCGACTACAGCTTAGGGATAATGCAAAGGAGCTGGGTAACGGTTGTT
-TCGAGTTCTATCATAAATGTGATAATGAATGTATGGAAAGTGTAAGAAAC
-GGAACGTATGACTACCCGCAGTATTCAGAAGAAGCAAGATTAAAAAGAGA
-GGAAATAAGTGGAGTAAAATTGGAATCAATAGGAATTTACCAAATACTGT
-CAATTTATTCTACAGTGGCGAGTTCCCTAGCACTGGCAATCATGATAGCT
-GGTCTATCCTTATGGATGTGCTCCAATGGGTCGTTACAA---------
->TREESPARROW_HENAN_4_2004
-ATGGAGAAAATAGTGCTTCTTCTTGCAATAGTCAGTCTTGTTAAAAGTGA
-TCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACA
-CAATAATGCAAAAGAACGTTACTGTTACACATGCCCAAGACATACTGGAA
-AAGACACACAACGGGAAGCTCTGCGATCTAGATGGAGTGAAACCTCTAAT
-TTTAAGAGATTGTAGTGTAGCTGGATGGCTCCTCGGAAACCCAATGTGTG
-ACGAATTCATCAATGTGCCGGAATGGTCTTACATAGTGGAGAAGGCCAGT
-CCAGCCAATGACCTCTGTTACCCAGGGGATTTCAACGACTATGAAGAACT
-GAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCC
-CCAAAAGTTCTTGGTCCGATCATGAAGCCTCATCAGGGGTGAGCTCAGCA
-TGTCCATACCAGGGGAGTCCCTCCTTTTTCAGAAATGTGGTATGGCTTAT
-CAAAAAGAACAGTGCATACCCAACAATAAAGAGGAGCTACAATAATACCA
-ACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCG
-GCAGAGCAGACAAAGCTCTATCAAAACCCAACCACCTATATTTCCGTTGG
-AACATCAACACTAAACCAGAGATTGGTACCAAAAATAGCTACTAGATCCA
-AAGTAAATGGGCAAAGTGGAAGAATGGAGTTCTTCTGGACAATTTTAAAG
-CCGAATGACGCTATCAACTTCGAGAGTAATGGAAATTTCATTGCTCCAGA
-ATATGCATACAAAATTGTCAAGAAAGGGGACTCAGCAATTATGAAAAGTG
-AATTGGAATATGGTAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCG
-ATAAACTCTAGTATGCCATTCCACAACATACACCCTCTCACCATCGGGGA
-ATGCCCCAAATATGTGAAATCAAACAGATTAGTCCTTGCGACAGGGCTCA
-GAAATAGCCCTCAAAGAGAGAGAAGAAGAAAAAAGAGAGGACTATTTGGA
-GCTATAGCAGGTTTTATAGAGGGAGGATGGCAGGGAATGGTAGATGGTTG
-GTATGGGTACCACCATAGCAATGAGCAGGGGAGTGGATACGCTGCAGACA
-AAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCG
-ATCATTGACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAA
-TAACTTAGAAAGGAGAATAGAAAATTTAAACAAGAAGATGGAGGACGGAT
-TCCTAGATGTCTGGACTTATAATGCTGAACTTCTGGTTCTCATGGAAAAT
-GAGAGAACTCTAGACTTTCATGACTCAAATGTCAAGAACCTTTACGAAAA
-GGTCCGACTACAACTTAGGGATAATGCAAAGGAGCTGGGTAACGGTTGTT
-TCGAGTTCTATCACAAATGTGATAATGAATGTATGGAAAGTGTAAAAAAC
-GGAACGTATGACTACCCGCAGTATTCAGAAGAAGCAAGACTAAACAGAGA
-GGAAATAAGTGGAGTAAAATTGGAATCAATAGGAACTTACCAAATACTGT
-CAATTTATTCAACAGTGGTGAGTTCCCTAGCACTGGCAATCATGGTAGCT
-GGTCTATCTTTATGGATGTGCTCCAATGGATCGTTACAATGCAGAATT
->CHICKEN_HEBEI_326_2005
-ATGGAGAGAATAGTGCTTCTTCTTGCAATAATCGGTCTTGTTAAAAGTGA
-TCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACA
-CAATAATGGAAAAGAACGTTACTGTTACACATGCTCAAGACATACTGGAG
-AAGACACACAACGGGAAGCTCTGCAACCCAGATGGAGTGAAGCCTCTAAT
-TTTGAAAGATTGTAGTGTAGCTGGATGGCTCCTCGGAAACCCAATGTGTG
-ACGAATTTATCAATGTGCCGGAATGGTCTTACATAGTGGAGAAGGCCAGT
-CCAGCCAATGGCCTCTGTTACCCAGGGGATTTCAATGACTATGAAGAACT
-GAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCC
-CCAAAAGTTCTTGGTCCGATCATGGAGCCTCATCAGGGGTGAGCTCAGCA
-TGTTCCTATCTGGGGAAGCCCTCCTTTTTCAGAAATGTGGTATGGCTTAT
-CAAAAAGAATAATACATACCCACCAATAAAGGTGAGCTACAACAATACCA
-ACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCCAATGATGAG
-GCAGAGCAGATAAAGATCTATCAAAACCCAACCACCTATATTTCCGTTGG
-AACATCAACACTAAACCAGAGATTGGTACCAAAAATAGCTACTAGATCCA
-AAGTAAACGGGCAAAGTGGAAGAATGGAGTTCTTCTGGACAATTTTAAAG
-CCGAATGATGCTATCAATTTCGATAGTAATGGAAATTTCATTGCTCCAGA
-ATATGCATACAAAATTGTCAAGAAAGGGGACTCAGCGATTATGAAAAGTG
-AATTGGAATATGGCAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCG
-ATAAATTCTAGTATGCCATTCCACAACATACACCCTCTCACCGTCGGGGA
-ATGCCCCAAATATGTGAAATCAAACAGATTAGTCCTCGCGACTGGACTCA
-GAAATGCCCCTCAAAGAGAGGGAGGAAGAAAAAAGAGAGGACTATTTGGA
-GCCATAGCAGGGTTTATAGAGGGAGGATGGCAGGGAATGGTAGATGGTTG
-GTATGGGTACCACCATAGCAATGAGCAGGGGAGTGGATACGCTGCAGACA
-AAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCG
-ATCATTGACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAA
-TAACTTAGAAAGGAGAATAGAAAATTTAAACAAGAAGATGGAGGACGGAT
-TCCTAGATGTCTGGACTTATAACGCTGAACTTCTGGTTCTCATGGAAAAT
-GAGAGAACTCTAGACTTTCATGACTCAAATGTCAAGAACCTTTACGAAAA
-GGTCCGACTACAGCTTAGGGATAATGCAAAGGAGCTGGGTAACGGTTGTT
-TCGAGTTCTATCACAAATGTGATAATGAATGTATGGAAAGTGTAAAAAAC
-GGAACGTATGACTACCCGCAGTATTCAGAAGAAGCAAGACTAAACAGAGA
-GGAAATAAGTGGAGTAAAATTGGAATCAATGGGAACTTACCAAATACTGT
-CAATTTATTCAACAGTGGCGAGTTCCCTAGCATTGGCAATCATGGTAGCT
-GGTCTATCTTTATGGATGTGCTCCAATGGATCGTTACAATGCAGAATT
->CHICKEN_HONGKONG_915_97
-ATGGAGAAAATAGTGCTTCTTCTTGCAACAGTCAGTCTTGTTAAAAGTGA
-TCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACA
-CAATAATGGAAAAGAATGTTACTGTTACACATGCCCAAGACATACTGGAA
-AGGACACACAACGGGAAGCTCTGCGATCTAAATGGAGTGAAACCTCTCAT
-TTTGAGGGATTGTAGTGTAGCTGGATGGCTCCTCGGAAACCCTATGTGTG
-ACGAATTCATCAATGTGCCGGAATGGTCTTACATAGTGGAGAAGGCCAGT
-CCAGCCAATGACCTCTGTTATCCAGGGAATTTCAACGACTATGAAGAACT
-GAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCC
-CCAAAAGTTCTTGGTCCAATCATGATGCCTCATCAGGGGTGAGCTCAGCA
-TGTCCATACCTTGGGAGGTCCTCCTTTTTCAGAAATGTGGTATGGCTTAT
-CAAAAAGAACAGTGCATACCCAACAATAAAGAGGAGCTACAATAATACCA
-ACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCG
-GCAGAGCAGACAAAGCTCTATCAAAATCCAACCACCTACATTTCCGTTGG
-AACATCAACACTGAACCAGAGATTGGTTCCAGAAATAGCTACTAGACCCA
-AAGTAAACGGGCAAAGTGGAAGAATGGAGTTCTTCTGGACAATTTTAAAG
-CCGAATGATGCCATCAATTTCGAGAGTAATGGAAATTTCATTGCCCCAGA
-ATATGCATACAAAATTGTCAAGAAAGGGGACTCAACAATTATGAAAAGTG
-AATTGGAATATGGTAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCG
-ATAAACTCTAGTATGCCATTCCACAACATACACCCCCTCACCATCGGGGA
-ATGCCCCAAATATGTGAAATCAAACAGATTAGTTCTTGCGACTGGACTCA
-GAAATACCCCTCAAAGGGAGAGAAGAAGAAAAAAGAGAGGACTATTTGGA
-GCTATAGCAGGTTTTATAGAGGGAGGATGGCAGGGCATGGTAGATGGTTG
-GTATGGGTACCACCATAGCAATGAGCAGGGGAGTGGATACGCTGCAGACA
-AAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCG
-ATCATTAACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAA
-TAACTTAGAAAGGAGAATAGAGAATTTAAACAAGAAAATGGAAGACGGAT
-TCCTAGATGTCTGGACTTACAATGCTGAACTTCTGGTTCTCATGGAAAAT
-GAGAGAACTCTCGACTTTCATGACTCAAATGTCAAGAACCTTTACGACAA
-GGTCCGACTACAGCTTAGGGATAATGCAAAGGAACTGGGTAATGGTTGTT
-TCGAATTCTATCACAAATGTGATAATGAATGTATGGAAAGTGTAAAAAAC
-GGAACGTATGACTACCCGCAGTATTCAGAAGAAGCAAGACTAAACAGAGA
-GGAAATAAGTGGAGTAAAATTGGAATCAATGGGAACTTACCAAATACTGT
-CAATTTATTCAACAGTGGCGAGTTCCCTAGCACTGGCAATCATGGTAGCT
-GGTCTATCTTTATGGATGTGCTCCAATGGATCGTTACAATGCAGAATT
->VIETNAM_3062_2004
-ATGGAGAAAATAGTGCTTCTTTTTGCAATAGTCAGTCTTGTTAAAAGTGA
-TCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACA
-CAATAATGGAAAAGAACGTTACTGTTACACATGCCCAAGACATACTGGAA
-AAGACACACAACGGGAAGCTCTGCGATCTAGATGGAGTGAAGCCTCTAAT
-TTTGAGAGATTGTAGTGTAGCTGGATGGCTCCTCGGAAACCCAATGTGTG
-ACGAATTCATCAATGTGCCGGAATGGTCTTACATAGTGGAGAAGGCCAAT
-CCAGTCAATGACCTCTGTTACCCAGGGGATTTCAATGACTATGAAGAATT
-GAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCC
-CCAAAAGTTCTTGGTCCAGTCATGAAGCCTCATTAGGAGTGAGCTCAGCA
-TGTCCATACCAGGGAAAGTCCTCCTTTTTCAGAAATGTGGTATGGCTTAT
-CAAAAAGAACAGTACATACCCAACAATAAAGAGGAGCTACAATAATACCA
-ACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCG
-GCAGAGCAGACAAAGCTCTATCAAAACCCAACCACCTATATTTCCGTTGG
-GACATCAACACTAAACCAGAGGTTGGTACCAAGAATAGCTACTAGATCCA
-AAGTAAACGGGCAAAGTGGAAGGATGGAGTTCTTCTGGACAATTTTAAAA
-CCGAATGATGCAATCAACTTCGAGAGTAATGGAAATTTCATTGCTCCAGA
-ATATGCATACAAAATTGTCAAGAAAGGGGACTCAACAATTATGAAAAGTG
-AATTGGAATATGGTAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCG
-ATAAACTCTAGTATGCCATTCCACAATATACACCCTCTCACCATCGGGGA
-ATGCCCCAAATATGTGAAATCAAACAGATTAGTCCTTGCGACTGGGCTCA
-GAAATAGCCCTCAAAGAGAGAGAAGAAGAAAAAAGAGAGGATTATTTGGA
-GCTATAGCAGGTTTTATAGAGGGAGGATGGCAGGGAATGGTAGATGGTTG
-GTATGGGTACCACCATAGCAATGAGCAGGGGAGTGGGTACGCTGCAGACA
-AAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCG
-ATCATTGACAAAATGAACACTCAATTTGAGGCCGTTGGAAGGGAATTTAA
-CAACTTAGAAAGGAGAATAGAGAATTTAAACAAGAAGATGGAAGACGGGT
-TCCTAGATGTCTGGACTTATAATGCTGAACTTCTGGTTCTCATGGAAAAT
-GAGAGAACTCTAGACTTTCATGACTCAAATGTCAAGAACCTTTACGACAA
-GGTCCGACTACAGCTTAGGGATAATGCAAAGGAGCTGGGTAACGGTTGTT
-TCGAGTTCTATCATAAATGTGATAATGAATGTATGGAAAGTGTAAGAAAC
-GGAACGTATGACTACCCGCAGTATTCAGAAGAAGCAAGACTAAAAAGAGA
-GGAAATAAGTGGAGTAAAATTGGAATCAATAGGAATTTACCAAATACTGT
-CAATTTATTCTACAGTGGCGAGTTCCCTAGCACTGGCAATCATGGTAGCT
-GGTCTATCCTTATGGATGTGCTCCAATGGGTCG---------------
->GOOSE_HONGKONG_W355_97
-ATGGAGAAAATAGTGCTTCTTCTTGCAACAGTCAGTCTTGTTAAAAGTGA
-TCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACA
-CAATAATGGAAAAGAATGTTACTGTTACACATGCCCAAGACATACTGGAA
-AGGACACACAACGGGAAGCTCTGCGATCTAAATGGAGTGAAACCTCTCAT
-TTTGAGGGATTGTAGTGTAGCTGGATGGCTCCTCGGAAACCCTATGTGTG
-ACGAATTCATCAATGTGCCGGAATGGTCTTACATAGTGGAGAAGGCCAGT
-CCAGCCAATGACCTCTGTTATCCAGGGAATTTCAACGACTATGAAGAACT
-GAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCC
-CCAAAAGTTCTTGGTCCAATCATGATGCCTCATCAGGGGTTAGCTCAGCA
-TGTCCATACCTTGGGAGGTCCTCCTTTTTCAGAAATGTGGTATGGCTTAT
-CAAAAAGAACAGTGCATACCCAACAATAAAGAGGAGCTACAATAATACCA
-ACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCG
-GCAGAGCAGACAAAGCTTTATCAAAATCCAACCACCTACATTTCCGTTGG
-AACATCAACACTGAACCAGAGATTGGTTCCAGAAATAGCTACTAGACCCA
-AAGTAAACGGGCAAAGTGGAAGAATGGAGTTCTTCTGGACAATTTTAAAG
-CCGAATGATGCCATCAATTTCGAGAGTAATGGAAATTTCATTGCCCCAGA
-ATATGCATACAAAATTGTCAAGAAAGGGGACTCAACAATTATGAAAAGTG
-AATTGGAATATGGTAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCG
-ATAAACTCTAGTATGCCATTCCACAACATACACCCCCTCACCATCGGGGA
-ATGCCCCAAATATGTGAAATCAAACAGATTAGTTCTTGCGACTGGACTCA
-GAAATACCCCTCAAAGGGAGAGAAGAAGAAAAAAGAGAGGACTATTTGGA
-GCTATAGCAGGTTTTATAGAGGGAGGATGGCAGGGCATGGTAGATGGTTG
-GTATGGGTACCACCATAGCAATGAGCAGGGGAGTGGATACGCTGCAGACA
-AAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCG
-ATCATTAACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAA
-TAACTTAGAAAGGAGAATAGAGAATTTAAACAAGAAAATGGAAGACGGAT
-TCCTAGATGTCTGGACTTACAATGCTGAACTTCTGGTTCTCATGGAAAAT
-GAGAGAACTCTCGACTTTCATGACTCAAATGTCAAGAACCTTTACGACAA
-GGTCCGACTACAGCTTAGGGATAATGCAAAGGAACTGGGTAATGGTTGTT
-TCGAATTCTATCACAAATGTGATAATGAATGTATGGAAAGTGTAAGAAAC
-GGAACGTATGACTACCCGCAGTATTCAGAAGAAGCAAGACTAAACAGAGA
-GGAAATAAGTGGAGTAAAATTGGAATCAATGGGAACTTACCAAATACTGT
-CAATTTATTCAACAGTGGCGAGTTCCCTAGCACTGGCAATCATGGTAGCT
-GGTCTATCTTTATGGATGTGCTCCAATGGATCGTTACAATGCAGAATT
->DUCK_HONGKONG_Y283_97
-ATGGAGAAAATAGTGCTTCTTCTTGCAACAGTCAGTCTTGTTAAAAGTGA
-TCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACA
-CAATAATGGAAAAGAATGTTACTGTTACACATGCCCAAGACATACTGGAA
-AGGACACACAACGGGAAGCTCTGCGATCTAAATGGAGTGAAACCTCTCAT
-TTTGAGGGATTGTAGTGTAGCTGGATGGCTCCTCGGAAACCCTATGTGTG
-ACGAATTCATCAATGTGCCGGAATGGTCTTACATAGTGGAGAAGGCCAGT
-CCAGCCAATGACCTCTGTTATCCAGGGAATTTCAACGACTATGAAGAACT
-GAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCC
-CCAAAAGTTCTTGGTCCAATCATGATGCCTCATCAGGGGTTAGCTCAGCA
-TGTCCATACCTTGGGAGGTCCTCCTTTTTCAGAAATGTGGTATGGCTTAT
-CAAAAAGAACAGTGCATACCCAACAATAAAGAGGAGCTACAATAATACCA
-ACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCG
-GCAGAGCAGACAAAGCTTTATCAAAATCCAACCACCTACATTTCCGTTGG
-AACATCAACACTGAACCAGAGATTGGTTCCAGAAATAGCTACTAGACCCA
-AAGTAAACGGGCAAAGTGGAAGAATGGAGTTCTTCTGGACAATTTTAAAG
-CCGAATGATGCCATCAATTTCGAGAGTAATGGAAATTTCATTGCCCCAGA
-ATATGCATACAAAATTGTCAAGAAAGGGGACTCAACAATTATGAAAAGTG
-AATTGGAATATGGTAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCG
-ATAAACTCTAGTATGCCATTCCACAACATACACCCCCTCACCATCGGGGA
-ATGCCCCAAATATGTGAAATCAAACAGATTAGTTCTTGCGACTGGACTCA
-GAAATACCCCTCAAAGGGAGAGAAGAAGAAAAAAGAGAGGACTATTTGGA
-GCTATAGCAGGTTTTATAGAGGGAGGATGGCAG-----------------
---------------------------------------------------
---------------------------------------------------
---------------------------------------------------
---------------------------------------------------
---------------------------------------------------
---------------------------------------------------
---------------------------------------------------
---------------------------------------------------
---------------------------------------------------
---------------------------------------------------
---------------------------------------------------
-------------------------------------------------
->DUCK_VIETNAM_376_2005
-ATGGAGAAAATAGTGCTTCTTTTTGCGATAGTCAGTCTTGTTAAAAGTGA
-TCAGATTTGCATTGGTTACCATGCAAACAACTCAACAGAGCAGGTTGACA
-CAATAATGGAAAAGAACGTTACTGTTACACATGCCCAAGACATACTGGAA
-AAGACACACAACGGGAAGCTCTGCGATCTAGATGGAGTGAAGCCTCTAAT
-TTTGAGAGATTGTAGTGTAGCTGGATGGCTCCTCGGAAACCCAATGTGTG
-ACGAATTCATCAATGTGCCGGAATGGTCTTACATAGTGGAGAAGGCCAAT
-CCAGTCAATGACCTCTGTTACCCAGGGGATTTCAATGACTATGAAGAATT
-GAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCC
-CCAAAAGTTCTTGGTCCAGTCATGAAGCCTCATTAGGAGTGAGCTCAGCA
-TGTCCATACCAGGGAAATCCCTCCTTTTTCAGAAATGTGGTATGGCTTAT
-CAAAAAGAACAGTACATACCCAACAATAAAGAGGAACTACAATAATACCA
-ACCAAGAAGATCTTTTGGTAATGTGGGGGATTCACCATCCTAATGATGCG
-GCAGAGCAGACAAAGCTCTATCAAAACCCAACCACCTATATTTCCGTTGG
-GACATCAACACTAAACCAGAGATTGGTACCAAGAATAGCTACTAGATCCA
-AAATAAACGGGCAAAGTGGGAGGATAGAGTTCTTCTGGACAATTTTAAAA
-CCGAATGATGCAATCAACTTCGAGAGTAATGGAAATTTCATTGCTCCAGA
-ATATGCATACAAAATTGTCAAGAAAGGGGACTCAACAATTATGAAAAGTG
-AATTGGAATATGGTAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCG
-ATAAACTCTAGTATGCCATTCCACAATATACATCCTCTCACCATCGGGGA
-GTGCCCCAAATATGTGAAATCAAACAGATTAGTCCTTGCGACTGGGCTCA
-GAAATAGCCCTCAAAGAGAGAGAAGAAGAAAAAAGAGAGGATTATTTGGA
-GCTATAGCAGGTTTTATAGAAGGAGGATGGCAAGGAATGGTAGATGGTTG
-GTATGGGTACCACCATAGCAATGAGCAGGGAAGTGGGTACGCTGCAGACA
-AAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCG
-ATCATTGACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAA
-CAACTTAGAAAGGAGAATAGAGAATTTAAACAAGAAGATGGAAGACGGGT
-TCCTAGATGTCTGGACTTATAATGCTGAACTTCTGGTTCTCATGGAAAAT
-GAGAGAACTCTAGACTTTCATGACTCAAATGTCAAGAACCTTTACGACAA
-GGTCCGACTACAGCTTAGAGATAATGCAAAGGAGCTGGGTAACGGTTGTT
-TCGAGTTCTATCATAAATGTGATAATGAATGTATGGAAAGTGTAAGAAAC
-GGAACGTATGACTACCCGCAGTATTCAGAAGAAGCAAGATTAAAAAGAGA
-GGAAATAAGTGGAGTAAAATTGGAATCAATAGGAATTTACCAAATACTGT
-CAATTTATTCTACTGTGGCGAGTTCCCTAGCACTGGCAATCATGGTAGCT
-GGTCTATCCTTATGGATGTGCTCCAATGGGTCGTTACAATGCAGA---
->MALLARD_VIETNAM_16_2003
-ATGGAGAAAATAGTGCTTCTTTTTGCAATAGTCAGTCTTGTTAAAAGTGA
-TCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACA
-CAATAATGGAAAAGAACGTTACTGTTACACATGCCCAAGACATACTGGAA
-AAGACACACAACGGGAAGCTCTGCGATCTAGATGGAGTGAAGCCTCTAAT
-TTTGAGAGATTGTAGTGTAGCTGGATGGCTCCTCGGAAACCCAATGTGTG
-ACGAATTCATCAATGTGCCGGAATGGTCTTACATAGTGGAGAAGGCCAAT
-CCAGTCAATGACCTCTGTTACCCAGGGGATTTCAATGAATATGAAGAATT
-GAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCC
-CCAAAAGTTCTTGGTCCAGTCATGAAGCCTCATTAGGGGTGAGCTCAGCA
-TGTCCATACCAGGGAAAGTCCTCCTTTTTCAGAAATGTGGTATGGCTTGT
-CAAAAAGAACAGTACATACCCAACAATAAAGAGGAGCTACAATAATACCA
-ACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCG
-GCAGAGCAGACAAAGCTCTATCAAAATCCAACCACCTACATTTCCGTTGG
-GACATCAACACTAAACCAGAGATTGGTACCAAGAATAGCTACTAGATCCA
-AAGTAAACGGGCAAAGTGGAAGGATGGAGTTCTTCTGGACAATTTTAAAA
-CCGAATGATGCAATCAACTTCGAGAGTAATGGAAATTTCATTGCTCCAGA
-ATATGCATACAAAATTGTCAAGAAAGGGGACTCAACAATTATGAAAAGTG
-AATTGGAATATGGTAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCG
-ATAAACTCTAGTATGCCATTCCACAATATACACCCCCTCACCATCGGGGA
-ATGCCCCAAATATGTGAAATCAAACAGATTAGTCCTTGCGACTGGGCTCA
-GAAATAGCCCTCAAAGAGAGAGAAGAAGAAAAAAGAGAGGATTATTTGGA
-GCTATAGCAGGTTTTATAGAGGGAGGATGGCAAGGAATGGTAGATGGTTG
-GTATGGGTACCACCATAGCAATGAGCAGGGGAGTGGGTACGCTGCAGACA
-AAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCG
-ATCATTGACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAA
-CAACTTAGAAAGGAGAATAGAGAATTTAAACAAGAAGATGGAAGACGGGT
-TCCTAGATGTCTGGACTTATAATGCTGAACTTCTGGTTCTCATGGAAAAT
-GAGAGAACTCTAGACTTTCATGACTCAAATGTCAAGAACCTTTACGACAA
-GGTCCGACTACAGCTTAGGGATAATGCAAAGGAGCTGGGTAACGGTTGTT
-TCGAGTTCTATCATAAATGTGATAATGAATGTATGGAAAGTGTAAGAAAC
-GGAACGTATGACTACCCGCAGTATTCAGAAGAAGCAAGACTAAAAAGAGA
-GGAAATAAGTGGAGTAAAATTGGAATCAATAGGAATTTACCAAATACTGT
-CAATTTATTCTACAGTGGCGAGTTCCCTAGCACTGGCAATCATGGTAGCT
-GGTCTATCCTTATGGATGTGCTCCAATGGGTCGTTACAATGCAGA---
->CHICKEN_THAILAND_KANCHANABURI_CK_160_2005
-ATGGAGAAAATAGTGCTTCTTTTTGCAATAGTCAGTCTTGTTAAAAGTGA
-TCAGATTTGCATTGGTTACCATGCAAACAACTCAACAGAGCAGGTTGACA
-CAATAATGGAAAAGAACGTTACTGTTACACATGCCCAAGACATACTGGAA
-AAGACACACAACGGGAAGCTCTGTGATCTAGATGGAGTGAAGCCTCTAAT
-TTTGAGAGATTGTAGTGTAGCTGGATGGCTCCTTGGAAACCCAATGTGTG
-ATGAATTCATCAATGTGCCGGAATGGTCTTACATAGTGGAGAAGGCCAAT
-CCAGCCAATGACCTCTGTTACCCAGGGGATTTCAATGACTATGAAGAATT
-GAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCC
-CCAAAAGTTCTTGGTCCAGTCATGAAGCCTCATTAGGAGTGAGCTCAGCA
-TGTCCATATCAGGGAAAGTCCTCCTTTTTCAGAAATGTGGTATGGCTTAT
-CAAAAAGAACAGTACATACCCAACAATAAAGAGGAGCTACAATAATACCA
-ACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCG
-GCAGAGCAGACAAAGCTCTATCAAAACCCAACCACCTACATTTCCGTTGG
-GACATCAACACTAAACCAGAGATTGGTACCAAGAATAGCTACTAGATCCA
-AAGTAAACGGGCAAAGTGGAAGGATGGAGTTCTTCTGGACAATTTTAAAA
-CCGAATGATGCAATCAACTTCGAGAGTAATGGAAATTTCATTGCTCCAGA
-ATATGCATACAAAATTGTCAAGAAAGGGGACTCAACAATTATGAAAAGTG
-AATTGGAATATGGTAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCG
-ATAAACTCTAGTATGCCATTCCACAATATACACCCTCTCACCATCGGGGA
-ATGCCCCAAATATGTGAAATCAAACAGATTAGTCCTTGCGACTGGACTCA
-GAAATAGCCCTCAAAGAGAGAAAAGAAGAAAAAAGAGAGGATTATTTGGA
-GCTATAGCAGGTTTTATAGAGGGAGGATGGCAGGGAATGGTAGATGGTTG
-GTATGGGTACCACCATAGCAATGAGCAGGGGAGTGGGTACGCTGCAGACA
-AAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCG
-ATCATTGACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAA
-CAACTTAGAAAGGAGAATAGAGAATTTAAACAAGAAGATGGAAGACGGGT
-TCCTAGATGTCTGGACTTATAATGCTGAACTTCTGGTTCTCATGGAAAAT
-GAGAGAACTCTAGACTTTCATGACTCAAATGTCAAGAACCTTTACGACAA
-GGTCCGACTACAGCTTAGGGATAATGCAAAGGAGCTGGGTAACGGTTGTT
-TCGAGTTCTATCATAAATGTGATAATGAATGTATGGAAAGTGTAAGGAAC
-GGAACGTATGACTACCCGCAGTATTCAGAAGAAGCAAGACTAAAAAGAGA
-GGAAATAAGTGGAGTAAAATTGGAATCAATAGGAATTTACCAAATACTGT
-CAATTTATTCTACAGTAGCGAGTTCCCTAGCACTGGCAATCATGGTAGCT
-GGTCTATCCTTATGGATGTGCTTCAATGGGTCGTTACAATGCAGAATT
->DUCK_GUANGZHOU_20_2005
-ATGGAGAAAATAGTGCTTCTTCTTGCAATAGTCAGTCTTGTTAAAAGTGA
-TCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACA
-CAATAATGGAAAAGAACGTTACTGTTACACATGCCCAAGACATACTGGAA
-AAGACACACAATGGGAAGCTCTGCGACCTAGATGGGGTGAAGCCTCTAAT
-TTTGAGAGATTGTAGTGTAGCTGGATGGCTCCTCGGGAACCCAATGTGTG
-ACGAATTCATCAATGTACCGGAATGGTCTTACATAGTGGAGAAGGCCAAT
-CCAGCCAATGACCTCTGTTACCCAGGTGATTTCAACGATTATGAAGAACT
-GAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCC
-CCAAAAGTTCTTGGTCCAACCATGAATCCTCATCAGGGGTGAGCTCAGCA
-TGTCCATACCTGGGAAAGCCCTCCTTTTTCAGAAATGTGGTATGGCTTAT
-CAAAAAGAACAATGCATACCCAACAATAAAGAAGAGCTACAATAATACCA
-ACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCG
-ACAGAGCAGACAAAGCTCTATCAAAACCCAACCACTTATATTTCCGTTGG
-AACATCAACACTAAACCAGAGATTGGTACCAAAAATAGCTACCAGATCCA
-AAGTAAACGGGCAAAGTGGAAGGATGGAGTTCTTCTGGACAATTTTAAAA
-CCGAATGATGCAATCAACTTCGAGAGTAATGGAAATTTCATTGCTCCAGA
-ATATGCATACAAAATTGTCAAGAAAGGGGACTCAGCAATTATGAAAAGTG
-AATTGGAATATGGTAACTGCAACACCAAATGTCAAACTCCAATGGGGGCG
-ATAAACTCTAGTATGCCATTCCACAACATACACCCTCTCACCATCGGGGA
-ATGCCCCAAATATGTGAAATCAAACAGATTAGTCCTTGCGACTGGGCTCA
-GAAATAGCCCTCAAAGGGAGAGAAGAAGAAAGAAGAGAGGACTATTTGGA
-GCTATAGCAGGTTTTATAGAGGGAGGATGGCAGGGAATGGTAGATGGTTG
-GTATGGATACCACCATAGCAATGAGCAGGGGAGTGGATACGCTGCAGACA
-AAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCG
-ATCATTGACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAA
-TAACTTAGAAAGGAGAATAGAGAATTTAAACAAGAAGATGGAAGACGGAT
-TCCTAGATGTCTGGACTTATAATGCTGAACTTCTGGTTCTCATGGAAAAT
-GAGAGAACTCTAGACTTTCATGACTCAAATGTCAGGAACCTTTACGACAA
-GGTCCGACTACAGCTTAGGGATAATGCAAAAGAGCTGGGTAACGGTTGTT
-TCGAGTTCTATCACAAATGTGATGATGAATGCATGGAAAGTGTAAGAAAC
-GGAACGTATGACTACCCGCAGTATTCAGAAGAAGCAAGGCTAAAAAGAGA
-GGAAATAAGTGGAGTAAAATTGGAATCAATAGGAACTTACCAAATACTGT
-CAATTTATTCAACAGTGGCAAGTTCCCTAGCGCTGGCAATCATGGTAGCT
-GGTCTATCTTTATGGATGTGCTCCAATGGTTCGTTACAATGCAGAATT
->CK_HK_WF157_2003
-ATGGAGAAAATAGTGCTTCTTCTTGCAATAGTCAGTCTTGTTAAAAGTGA
-TCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACA
-CAATAATGGAAAAGAACGTTACTGTTACACATGCCCAAGACATACTGGAA
-AAGACCCACAACGGGAAGCTCTGCGACCTAGATGGAGTGAAGCCTCTAAT
-TTTGAGAGATTGTAGTGTAGCTGGATGGCTCCTCGGGAACCCAATGTGTG
-ACGAATTCATCAATGTACCGGAATGGTCTTACATAGTGGAGAAGGCCAGT
-CCATCCAATGACCTCTGTTACCCAGGGGATTTCAACAATTATGAAGAACT
-GAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCC
-CCAAAAGCTCTTGGTCCAATCATGAAGCCTCATCAGGGGTGAGCTCAGCA
-TGTCCATACCTGGGAAAGCCCTCCTTTTTCAGAAATGTGGTATGGCTTAT
-CAAAAAGAACAGTACATACCCAACAATAAAGAGGAGCTACAATAATACCA
-ACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCG
-GCAGAGCAGATAAAGCTCTATCAAAACCCAACCACCTATATTTCCGTTGG
-AACATCAACACTAAACCAGAGATTGGTACCAAAAATAGCTACTAGATCCA
-AAGTAAACGGGCAAAGTGGAAGGATGGAGTTCTTCTGGACAATTTTAAAA
-CCGAATGATGCAATCAACTTCGAGAGTAATGGAAATTTCATTGCTCCAGA
-ATATGCATACAAAATTGTCAAGAAAGGGGACTCAGCAATTATGAAAAGTG
-AATTGGAATATGGTAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCG
-ATAAACTCTAGTATGCCCTTCCACAACATACACCCTCTCACCATCGGGGA
-ATGCCCCAAATATGTGAAATCAAACAGACTAGTCCTTGCGACTGGGCTCA
-GAAATAGCCCTCAAAGAGAGAGAAGAAGAAAAAAGAGAGGACTATTTGGA
-GCTATAGCGGGTTTTATAGAGGGAGGATGGCAGGGAATGGTAGATGGTTG
-GTATGGATACCACCATAGCAATGAGCAGGGGAGTGGATACGCTGCAGACA
-AAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCG
-ATCATTGACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAA
-TAACTTAGAAAGGAGAATAGAGAATTTAAACAAGAAGATGGAAGACGGAT
-TCCTAGATGTCTGGACTTATAATGCTGAACTTCTAGTTCTCATGGAAAAT
-GAGAGAACTCTAGACTTTCATGACTCAAATGTCAAGAACCTTTACGACAA
-GGTCCGACTACAGCTTAGGGATAATGCAAAAGAGCTGGGTAACGGTTGTT
-TCGAGTTCTATCACAAATGTGATAATGAATGTATGGAAAGTGTAAGAAAC
-GGAACGTATGACTACTCGCAGTATTCAGAAGAAGCAAGACTAAAAAGAGA
-GGAAATAAGTGGAGTAAAATTGGAATCAATAGGAACTTACCAAATACTGT
-CAATTTATTCAACAGTGGCGAGTTCCCTAGCACTGGCAATCATGGTAGCT
-GGTCTATCTTTATGGATGTGCTCCAATGGTTCGTTACAATGT------
->SWINE_ANHUI_2004
-ATGGAGAAAATAGTGCTTCTTCTTGCAATAGTCAGTCTTGTTAAAGGTGA
-TCAGATTTGCACTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACA
-CAATAATGGAAAAGAACGTTACTGTTACACATGCTCAAGACATACTGGAA
-AAGACACACAACGGGAAGCTCTGCGACCTAGATGGAGTGAAGCCTCTAAT
-TTTAAGAGATTGTAGTGTAGCTGGATGGCTCCTCGGGAACCCAATGTGTG
-ACGAATTCATCAATGTGCCGGAATGGTCTTACATAGTGGAGAAGGCCAAT
-CCAGCCAATGACCTCTGTTACCCAGGGGATTTCAACGACTATGAAGAACT
-GAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCC
-CCAAAAGTTCTTGGTCCGATCATGAAGCCTCATCAGGGGTGAGCTCAGCA
-TGTCCATACCAGGGAAGGTCCTCCTTTTTCAGAAATGTGGTATGGCTTAT
-CAAAAAGAACAGTGCATACCCAACAATAAAGAGGAGCTACAATAATACCA
-ACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCACCCTAATGATGCG
-GCAGAGCAGATAAAGCTCTATCAAAACCCAACCACCTATATTTCCGTTGG
-GACATCAACACTAAACCAGAGATTGGTACCAAAAATAGCTACTAGATCCA
-AAGTAAACGGACAAAGTGGAAGAATGGAGTTCTTCTGGACAATTTTAAAA
-CCGAATGATGCTATCAATTTCGAGAGTAATGGAAATTTCATTGCTCCAGA
-ATATGCATACAAAATTGTCAAGAAAGGGGACTCTGCAATTATGAAAAGTG
-AATTGGAATATGGCAACTGCAACACCAAGTGTCAAACTCCAGTGGGGGCG
-ATAAATTCTAGCATGCCATTCCACAACATACACCCTCTCACCATCGGGGA
-ATGCCCCAAATATGTGAAATCAAACAGATTAGTCCTTGCGACTGGACTCA
-GAAATGCCCCTCAAAGAGAGGGAAGAAGAAAAAAGAGAGGACTATTTGGA
-GCTATAGCAGGGTTTATAGAGGGAGGATGGCAGGGGATGGTAGATGGTTG
-GTATGGGTACCACCATAGCAATGAGCAGGGGAGTGGATACGCTGCAGACA
-AAGAATCCACTCAAAAAGCAATAGATGGAGTCACCAATAAGGTCAACTCG
-ATCATTGACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAA
-TAACTTAGAAAGGAGAATAGAAAATTTAAACAAGAAGATGGAGGACGGAT
-TCCTAGATGTCTGGACTTATAATGCTGAACTTCTGGTTCTCATGGAAAAT
-GAGAGAACTCTAGACTTTCATGACTCAAATGTCAAGAACCTTTACGACAA
-GGTCCGACTACAGCTTAGGGATAATGCAAAGGAGCTGGGTAACGGTTGTT
-TCGAGTTCTATCACAGATGTGATAATGAATGTATGGAAAGTGTAAGAAAC
-GGAACGTATGACTACCCGCAGTATTCGGAAGAAGCAAGACTAAACAGAGA
-GGAAATAAGTGGAGTAAAATTGGAATCAATAGGAACTTACCAAATACTGT
-CAATTTATTCAACAGTGGCGAGTTCCCTAGCACTGGCAATCATGGTGGCT
-GGTCTATCTTTATGGATGTGCTCCAATGGATCGTTACAATGCAGAATT
->DUCK_VIETNAM_272_2005
-ATGGAGAAAATAGTGCTTCTTTTTGCAATAGTCAGTCTTGTTAAAAGTGA
-TCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACA
-CAATAATGGAAAAGAACGTTACTGTTACACATGCCCAAGACATACTGGAA
-AAGACACACAACGGGAAGCTCTGCGATCTAGATGGAGTGAAGCCTCTAAT
-TTTGAGAGATTGTAGTGTAGCTGGATGGCTCCTTGGAAATCCAATGTGTG
-ACGAATTCATCAATGTGCCGGAATGGTCTTACATAGTGGAGAAGGCCAAT
-CCAGTCAATGACCTCTGTTACCCAGGGGATTTCAATGACTATGAAGAATT
-GAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCC
-CCAAAAGTTCTTGGCCCAGTCATGAAGCCTCATTAGGGGTGAGCTCAGCA
-TGTCCATACCAGGGAAGGTCCTCCTTTTTCAGAAATGTGGTATGGCTTAT
-CAAAAAGAACAGTACATATCCAACAATAAAGAGGAGCTACAATAATACCA
-ACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCG
-GCAGAGCAGACAAAGCTCTATCAAAACCCAACCACCTATATTTCCGTTGG
-GACATCAACACTAAACCAGAGATTGATACCAAGAATAGCTACTAGATCCA
-AAGTAAACGGGCAAAGTGGAAGGATGGAGTTCTTCTGGACAATTTTAAAA
-CCGAATGATGCAATCAATTTCGAGAGTAATGGAAATTTCATTGCCCCAGA
-ATACGCATACAAAATTGTCAAGAAAGGGGACTCAACAATTATGAAAAGTG
-AATTGGAATATGGTAACTGCAACACCAAGTGTCAAACACCAATGGGGGCG
-ATAAATTCTAGTATGCCATTCCACAATATACACCCTCTCACCATCGGGGA
-ATGCCCCAAATATGTGAAATCAAACAGATTAGTCCTTGCGACTGGGCTCA
-GAAATAGCCCTCAAAGAGAGAGAAGA---AAAAAGAGAGGATTATTTGGA
-GCTATAGCAGGTTTTATAGAGGGGGGATGGCAGGGAATGGTAGATGGTTG
-GTATGGGTACCACCATAGCAATGAACAGGGGAGTGGGTACGCTGCAGACA
-AAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCG
-ATCATTGACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAA
-CAACTTAGAAAGGAGAATAGAGAATTTAAACAAGAAGATGGAAGACGGGT
-TCCTAGATGTCTGGACTTATAATGCTGAACTTCTGGTTCTCATGGAAAAT
-GAGAGAACTCTAGACTTTCATGACTCAAATGTCAAGAACCTTTACGACAA
-GGTCCGACTACAGCTTAGGGATAATGCAAAGGAGCTGGGTAACGGTTGTT
-TCGAGTTCTATCATAAATGTGATAATGAATGTATGGAAAGTGTAAGAAAT
-GGAACGTATGACTACCCGCAGTATTCAGAAGAAGCAAAACTAAAAAGAGA
-GGAAATAAGTGGAGTAAAATTGGAATCAATAGGAATTTACCAAATACTGT
-CAATTTATTCCACAGTAGCGAGTTCCCTAGCACTGGCAATCATGGTAGCT
-GGTCTATCCTTATGGATGTGCTCCAATGGGTCGTTACAATGCAGA---
->HONGKONG_97_98
-------------------------------------------------GA
-CCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGATA
-CAATAATGGAAAAGAATGTTACTGTTACACATGCCCAAGACATACTGGAA
-AGGACACACGACGGGAAGCTCTGCGATCTAAATGGAGTGAAACCTCTCAT
-TTTGAGGGATTGTAGTGTAGCTGGATGGCTCCTCGGAAACCCTATGTGTG
-ACGAATTCATCAATGTGCCGGAATGGTCTTACATAGTGGAGAAGGCCAGT
-CCAGCCAATGACCTCTGTTATCCAGGGAATTTCAACGACTATGAAGAACT
-GAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCC
-CCAAAAGTTCTTGGTCCAATCATGATGCCTCATCAGGGGTGAGCTCAGCA
-TGTCCATACCTTGGGAGGTCCTCCTTTTTCAGAAATGTGGTATGGCTTAT
-CAAAAAGAACAGTGCATACCCAACAATAAAGAGGAGCTACAATAATACCA
-ACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCG
-GCAGAGCAGACAAAGCTCTATCAAAATCCAACCACCTACATTTCCGTTGG
-AACATCAACACTGAATCAGAGATTGGTTCCAGAAATAGCTACTAGACCCA
-AAGTAAACGGGCAAAGTGGAAGAATGGAGTTCTTCTGGACAATTTTAAAG
-CCGAATGATGCCATCAATTTCGAGAGTAATGGAAATTTCATTGCCCCAGA
-ATATGCATACAAAATTGTCAAGAAAGGGGACTCAACAATTATGAAAAGTG
-AATTGGAATATGGTAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCG
-ATAAACTCTAGTATGCCATTCCACAACATACACCCCCTCACCATCGGGGA
-ATGCCCCAAATATGTGAAATCAAACAGATTAGTTCTTGCGACTGGACTCA
-GAAATACCCCTCATAGGGAGAGAAGAAGAAAAAAGAGAGGACTATTTGGA
-GCTATAGCAGGTTTTATAGAAGGAGGATGGCAGGGAATGGTAGATGGTTG
-GTATGGGTACCACCATAGCAATGAGCAGGGGAGTGGATACGCTGCAGACC
-AAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCG
-ATCATTAACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAA
-TAACTTAGAAAGGAGAATAGAGAATTTAAACAAGAAAATGGAAGACGGAT
-TCCTAGATGTCTGGACTTACAATGCTGAACTTCTGGTTCTCATGGAAAAT
-GAGAGAACTCTCGACTTTCATGACTCAAATGTCAAGAACCTTTACGACAA
-GGTCCGACTACAGCTTAGGGATAATGCAAAGGAACTGGGTAATGGTTGTT
-TCGAATTCTATCACAAATGTGATAATGAATGTATGGAAAGTGTAAAAAAC
-GGAACGTATGACTACCCGCAGTATTCAGAAGAAGCAAGACTAAACAGAGA
-GGAAATAAGTGGAGTAAAATTGGAATCAATGGGAACTTACCAAATACTGT
-CAATTTATTCAACAGTGGCGAGTTCCCTAGCACTGGCAATCATGGTAGCT
-GGTCTATCTTTATGGATGTGCTCCAATGGATCGTTACAATGCAGAATT
->GOOSE_SHANTOU_2216_2005
-ATGGAGAAAATAGTGCTTCTTCTTGCAATAATCAGCCTTGTTAAAAGTGA
-TCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACA
-CAATAATGGAAAAGAACGTTACTGTTACACATGCCCAAGACATACTGGAA
-AAGACACACAATGGGAAGCTCTGCGACTTAGATGGGGTGAAGCCTCTAAT
-TTTGAGAGACTGTAGTGTAGCTGGATGGCTCCTCGGGAACCCAATGTGTG
-ACGAATTCATCAATGTACCGGAATGGTCTTACATAGTGGAGAAGGCCAGT
-CCAGCCAATGACCTCTGTTACCCAGGTGATTTCAACGATTATGAAGAACT
-GAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCC
-CCAAAAGTTCTTGGTCCAATCATGAAGCCTCATCAGGGGTGAGCTCAGCA
-TGTCCATACCTGGGAAAGCCCTCCTTTTTCAGAAATGTGGTATGGCTTAT
-CAAAAAGAACAGTGCATACCCAACAATAAAGAGGAGCTACAATAATACCA
-ACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCG
-GCAGAGCAGACAAAGCTCTATCAAAACCCAATCACCTATATTTCCGTTGG
-AACATCAACACTAAACCAGAGATTGGTACCAAAAATAGCTACCAGATCCA
-AAGTAAACGGGCAAAGTGGAAGGATGGAGTTCTTCTGGACAATTTTAAAA
-CCGAATGATTCAATCAACTTCGAGAGTAATGGAAATTTCATTGCTCCAGA
-ATATGCATACAAAATTGTCAAGAAAGGGGACTCAGCAATTATGAAAAGCG
-AATTGGAATATGGTAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCG
-ATAAACTCTAGTATGCCATTCCACAACATACACCCTCTCACCATCGGGGA
-ATGCCCCAAATATGTGAAATCAAACAGATTAGTCCTTGCGACTGGGCTCA
-GAAATAGCCCTCAAAGAGAGAGAAGAAGAAAGAAGAGAGGACTATTTGGA
-GCTATAGCAGGTTTTATAGAGGGAGGATGGCAGGGAATGGTAGATGGTTG
-GTATGGATACCACCATAGCAATGAGCAGGGGAGTGGATACGCTGCAGACA
-AAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCG
-ATCATTGACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAA
-TAACTTAGAAAGGAGAATAGAGAATTTAAACAAGAAGATGGAAGACGGAT
-TCCTAGATGTCTGGACTTATAATGCTGAACTTCTGGTTCTCATGGAAAAT
-GAGAGAACTCTAGACTTTCATGACTCAAATGTCAAGAACCTTTACGACAA
-GGTCCGACTACAGCTTAGGGATAATGCAAAAGAGCTAGGTAACGGTTGTT
-TCGAGTTCTATCACAAATGTGATAATGAATGCATGGAAAGTGTAAGAAAC
-GGAACGTATGACTACCCGCAATATTCAGAAGAAGCAAGGCTAAAAAGAGA
-GGAAATTAGTGGAGTAAAATTGGAATCAATAGGAACTTACCAAATACTGT
-CAATTTATTCAACAGTGGCAAGTTCCCTAGCGCTGGCAATCATGGTAGCT
-GGTCTATCTTTATGGATGTGCTCCAATGGTTCGTTACAATGCAGAATT
->TREESPARROW_HENAN_3_2004
-ATGGAGAAAATAGTGCTTCTTCTTGCAATAGTCAGTCTTGTTAAAAGTGA
-TCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACA
-CTATAATGGAAAAGAACGTTACTGTTACACATGCCCAAGACATACTGGAA
-AAGACACACAACGGGAAGCTCTGCGATCTAGATGGAGTGAAGCCTCTAAT
-TTTGAGAGATTGTAGTGTAGCTGGATGGCTCCTCGGAAACCCAATGTGTG
-ACGAATTCATCAATGTGCCGGAATGGTCTTACATAGTGGAGAAGGCCAGT
-CCAGCCAATGACCTCTGTTACCCAGGGGATTTCAACGACTATGAAGAACT
-GAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCGGATCATCC
-CCAAAAGTTCTTGGTCCAATCATGATGCCTCATCAGGGGTGAGCTCAGCA
-TGTCCATACCAGGGGAAGCCCTCCTTTTTCAGAAATGTGGTATGGCTTAT
-CAAAAAGAACAGTACATACCCAACGATAAAGAGGAGCTACAATAATACCA
-ACCCAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCG
-GCAGAGCAGATAAAGCTCTATCAAAACCCAACCACCTATATTTCCGTTGG
-AACATCAACACTAAACCAGAGATTGGTACCAAAAATAGCTACTAGATCCA
-AAGTAAATGGGCAAAGTGGAAGAATGGAGTTCTTCTGGACAATTTTAAAG
-CCGAATGACGCTATCAACTTCGAGAGTAATGGAAATTTCATTGCTCCAGA
-ATATGCATACAAAATTGTCAAGAAAGGGGACTCAGCAATTATGAAAAGTG
-AATTGGAATATGGTAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCG
-ATAAATTCTAGTATGCCATTCCACAACATACACCCTCTCACCATCGGGGA
-ATGCCCCAAATATGTGAAATCAAACAGATTAGTCCTTGCGACAGGGCTCA
-GAAATAGCCCTCAAAGAGAGGGAAGAAGAAAAAAGAGAGGACTATTTGGA
-GCTATAGCAGGTTTTATAGAGGGAGGATGGCAGGGAATGGTAGATGGTTG
-GTATGGGTACCACCATAGCAATGAGCAGGGGAGTGGATACGCTGCAGACA
-AAGAATCCACTCAAAAAGCAATAGATGGAGTCACCAATAAGGTCAACTCG
-ATCATTGACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAA
-TAACTTAGAAAGGAGAATAGAAAATTTAAACAAGAAGATGGAGGACGGAT
-TCCTAGATGTCTGGACTTATAATGCTGAACTTCTGGTTCTCATGGAAAAT
-GAGAGAACTCTAGACTTTCATGACTCAAATGTCAAGAACCTTTACGAAAA
-GGTCCGACTACAACTTAGGGATAATGCAAAGGAGCTGGGTAACGGTTGTT
-TCGAGTTCTATCACAAATGTGATAATGAATGTATGGAAAGTGTAAAAAAC
-GGAACGTATGACTACCCGCAGTATACGGAAGAAGCAAGACTAAACAGAGA
-GGAAATAAGTGGAGTAAAATTGGAATCAATAGGAACTTACCAAATACTGT
-CAATTTATTCAACAGTAGTGAGTTCCCTAGCACTGGCAATCATGGTAGCT
-GGTCTATCTTTATGGATGTGCTCCAATGGATCGTTACAATGCAGAATT
->PEREGRINEFALCON_HK_D0028_2004
-ATGGAGAAAATAGTGCTTCTTCTTGCAATAGTCAGTCTTGTTAAAAGTGA
-TCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACA
-CAATAATGGAAAAGAATGTTACTGTTACACATGCCCAAGACATACTGGAA
-AAGACACACAATGGGAAGCTCTGTGACCTAGATGGGGTGAAGCCTCTAAT
-TTTGAGAGATTGTAGTGTCGCTGGATGGCTCCTCGGGAACCCAATGTGTG
-ACGAATTCATCAATGTACCGGAATGGTCTTACATAGTGGAGAAGGCCAGT
-CCAGCCAATGACCTCTGTTACCCAGGTGATTTCAACGATTATGAAGAACT
-GAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCC
-CCAAAAGTTCTTGGTCCAATCATGAAGCCTCATCAGGGGTGAGCTCAGCA
-TGTCCATACCTGGGAAAGCCCTCCTTTTTCAGAAATGTGGTATGGCTTAT
-CAAAAAGAACAGTGCATACCCAACAATAAAGAGGAGCTACAATAATACCA
-ACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCG
-GCAGAGCAGACAAAGCTCTATCAAAACCCAACCACCTATGTTTCCGTTGG
-AACATCAACACTAAACCAGAGATTGGTACCAAAAATAGCCACCAGATCCA
-AAGTAAACGGGCAAAGTGGAAGGATGGAGTTCTTCTGGACAATTTTAAAA
-CCGAATGATGCAATCAACTTCGAGAGTAATGGAAATTTCATTGCTCCAGA
-ATATGCATACAAAATTGTCAAGAAAGGGGACTCAGCAATTATGAAAAGTG
-AATTGGAATATGGTAACTGCAATACCAAGTGTCAAACTCCAATGGGGGCG
-ATAAACTCTAGTATGCCATTCCACAACATACACCCTCTCACCATCGGGGA
-ATGCCCCAAATATGTGAAATCAAACAGATTAGTCCTTGCGACTGGGCTCA
-GAAATAGCCCTCAAAGAGAGAGAAGAAGAAAAAAGAGAGGACTATTTGGA
-GCTATAGCAGGTTTTATAGAGGGAGGATGGCAGGGAATGGTAGATGGTTG
-GTATGGATACCACCATAGCAATGAGCAGGGGAGTGGATACGCTGCAGACA
-AAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCG
-ATCATTGACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAA
-TAACTTAGAAAGGAGAATAGAGAATTTAAACAAGAAGATGGAAGACGGAT
-TCCTAGATGTCTGGACTTATAATGCTGAACTTCTGGTTCTCATGGAAAAT
-GAGAGAACTCTAGACTTTCATGACTCAAATGTCAAGAACCTTTACGACAA
-GGTCCGACTACAGCTTAGGGATAATGCAAAAGAGCTGGGTAACGGTTGTT
-TCGAGTTCTATCACAAATGTGATAATGAATGTATGGAAAGTGTAAGAAAC
-GGAACGTATGACTACCCGCAGTATTCAGAAGAAGCAAGACTAAAAAGAGA
-GGAAATAAGTGGAGTAAAATTGGAATCAATAGGAACTTACCAAATACTGT
-CAATTTATTCAACAGTGGCGAGTTCCCTAGCGCTGGCAATCATGGTAGCT
-GGTCTATCTTTATGGATGTGCTCC------------------------
->TREESPARROW_HENAN_2_2004
-ATGGAGAAAATAGTGCTTCTTCTTGCAATAGTCAGTCTTGTTAAAAGTGA
-TCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACA
-CAATAATGGAAAAGAACGTTACTGTTACACATGCTCAAGACATATTGGAA
-AAGACACACAACGGGAAGCTCTGCGACCTAGATGGAGTGAAGCCTCTAAT
-TTTGAAAGATTGTAGTGTAGCTGGATGGCTCCTCGGAAACCCAATGTGTG
-ACGAATTCATCAATGTGCCGGAGTGGTCTTACATAGTGGAGAAGGCCAGT
-CCAGCCAATGACCTCTGTTACCCAGGGGATTTCAACGACTATGAAGAACT
-GAAACACCTATTGAGCAGAATAAACCATTTTGAAAAAATTCAGATCATCC
-CCAAAAGTTCTTGGTCCGATCATGAAGCCTCATCAGGGGTGAGCTCAGCA
-TGTCCATACCTGGGGAAGCCCTCCTTTTTCAGAAATGTGGTATGGCTTAT
-CAAAAAGAACAGTACATACCCAACAATAAAGAGGGGCTACAATAATACCA
-ACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCG
-GCAGAGCAGATAAAGCTCTATCAAAACCCAACCACCTATATTTCCGTTGG
-AACATCAACACTAAACCAGAGATTGGTACCAAAAATAGCTACTAGATCCA
-AAGTAAACGGACAAAGTGGAAGAATGGAGTTCTTCTGGACAATTTTAAAA
-CCGAATGATGCTATCAATTTCGAGAGTAATGGAAATTTCATTGCTCCAGA
-ATATGCATACAAAATTGTCAAGAAAGGGGACTCTGCAATTATGAAGAGTG
-AATTGGAATATGGCAACTGCAACACCAAGTGTCAAACTCCAGTGGGGGCG
-ATAAATTCTAGCATGCCATTCCACAACATACACCCTCTCACCATCGGGGA
-ATGCCCCAAATATGTGAAATCAAACAGATTAGTCCTTGCGACTGGACTCA
-GAAATGCCCCTCAAAGAGAGGGAAGAAGAAAAAAGAGAGGACTATTTGGA
-GCTATAGCAGGGTTTATAGAGGGAGGATGGCAGGGGATGGTAGATGGTTG
-GTATGGGTACCACCATAGCAATGAGCAGGGGAGTGGATACGCTGCAGACA
-AAGAATCCACTCAAAAAGCAATAGATGGAGTCACCAATAAGGTCAACTCG
-ATCATTGACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAA
-TAACTTAGAAAGGAGAATAGAAAATTTAAACAAGAAGATGGAGGACGGAT
-TCCTAGATGTCTGGACTTATAATGCTGAACTTCTGGTTCTCATGGAAAAT
-GAGAGAACTCTAGACTTTCATGACTCAAATGTCAAGAACCTTTACGAAAA
-GGTCCGACTACAACTTAGGGATAATGCAAAGGAGCTGGGTAACGGTTGTT
-TCGAGTTCTATCACAAATGTGATAATGAATGTATGGAAAGTGTAAAAAAC
-GGAACGTATGACTACCGGCTGGACTCAGAAGAAGCAAGACTAAACAGAGA
-GGAAATAAGTGGAGTAAAATTGGAATCAATAGGAACTTACCAAATACTGT
-CAATTTATTCAACAGTGGCGAGTTCCCTAGCACTGGCAATCATGGTAGCT
-GGTCTATCTTTATGGATGTGCTCCAATGGATCGTTACAATGCAGAATT
->HONGKONG_538_97
-------------------------------------------------GA
-TCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACA
-CAATAATGGAAAAGAATGTTACTGTTACACATGCCCAAGACATACTGGAA
-AGGACACACAACGGGAAGCTCTGCGATCTAAATGGAGTGAAACCTCTCAT
-TTTGAGGGATTGTAGTGTAGCTGGATGGCTCCTCGGAAACCCTATGTGTG
-ACGAATTCATCAATGTGCCGGAATGGTCTTACATAGTGGAGAAGGCCAGT
-CCAGCCAATGACCTCTGTTATCCAGGGAATTTCAACGACTATGAAGAACT
-GAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCC
-CCAAAAGTTCTTGGTCCAATCATGATGCCTCATCAGGGGTGAGCTCAGCA
-TGTCCATACCTTGGGAGGTCCTCCTTTTTCAGAAATGTGGTATGGCTTAT
-CAAAAAGAACAGTGCATACCCAACAATAAAGAGGAGCTACAATAATACCA
-ACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCG
-GCAGAGCAGACAAAGCTCTATCAAAATCCAACCACCTACATTTCCGTTGG
-AACATCAACACTGAACCAGAGATTGGTTCCAGAAATAGCTACTAGACCCA
-AAGTAAACGGGCAAAGTGGAAGAATGGAGTTCTTCTGGACAATTTTAAAG
-CCGAATGATGCCATCAATTTCGAGAGTAATGGAAATTTCATTGCCCCAGA
-ATATGCATACAAAATTGTCAAGAAAGGGGACTCAACAATTATGAAAAGTG
-AATTGGAATATGGTAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCG
-ATAAACTCTAGTATGCCATTCCACAACATACACCCCCTCACCATCGGGGA
-ATGCCCCAAATATGTGAAATCAAACAGATTAGTTCTTGCGACTGGACTCA
-GAAATACCCCTCAAAGGGAGAGAAGAAGAAAAAAGAGAGGACTATTTGGA
-GCTATAGCAGGTTTTATAGAGGGAGGATGGCAGGGAATGGTAGATGGTTG
-GTATGGGTACCACCATAGCAATGAGCAGGGGAGTGGATACGCTGCAGACC
-AAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCG
-ATCATTAACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAA
-TAACTTAGAAAGGAGAATAGAGAATTTAAACAAGAAAATGGAAGACGGAT
-TCCTAGATGTCTGGACTTACAATGCTGAACTTCTGGTTCTCATGGAAAAT
-GAGAGAACTCTCGACTTTCATGACTCAAATGTCAAGAACCTTTACGACAA
-GGTCCGACTACAGCTTAGGGATAATGCAAAGGAACTGGGTAATGGTTGTT
-TCGAATTCTATCACAAATGTGATAATGAATGTATGGAAAGTGTAAGAAAC
-GGAACGTATGACTACCCGCAGTATTCAGAAGAAGCAAGACTAAACAGAGA
-GGAAATAAGTGGAGTAAAATTGGAATCAATGGGAACTTACCAAATACTGT
-CAATTTATTCAACAGTGGCGAGTTCCCTAGCACTGGCAATCATGGTAGCT
-GGTCTATCTTTATGGATGTGCTCCAATGGATCGTTACAATGCAGAATT
+>BRO1_1
+ATTCTAATTTAAACTATTCT-CTGTTCTTTCATGGGGAAGCAGATTTGGG
+TACCACCCAAGTATTGACTCACCCATCAACAACCGCTATGTATTTCGTAC
+ATTAC-TGCCAGCCACCATGAATATTGTACGGTACCATAAA-TACTTGAC
+CACCTGTAGTACATAAAAACCC-AATCC--ACATCAAAA----CCCCCCC
+CC-CATGCTTACAAGCAAGTACAGCAACCAACCCTCAA-CTATCACACAT
+CAACTGCAACTCCAAAGCCAC-CCCTCACCCAC-TAGGATACCAACAAAC
+CTACCCACCC-TTAACAGTACATAGTACATAAAGCCATTTACCGTACATA
+GCACATTACA-GTCAAATCCCTTCTCGTCCCC-ATGG-ATGACCCCCC-T
+CAGAT-AGGGGTCCCTTGACCACCATCC
+>BRO2
+ATTCTAATTTAAACTATTCT-CTGTTCTTTCATGGGGAAGCAGATTTGGG
+TACCACCCAAGTATTGACTCACCCATCAACAACCGCTATGTATTTCGTAC
+ATTAC-TGCCAGCCACCATGAATATTGTACGGTACCATAAA-TACTTGAC
+CACCTGTAGTACATAAAAACCC-AATCC--ACATCAAAA----CCCCCCC
+CC-CATGCTTACAAGCAAGTACAGCAACCAACCCTCAA-CTATCACACAT
+CAACTGCAACCCCAAAGCCAC-CCCTCACCCAC-TAGGATACCAACAAAC
+CTACCCACCC-TTAACAGTACATAGTGCATAAAGCCATTTACCGTACATA
+GCACATTATA-GTCAAATCCCTTCTCGTCCCC-ATGG-ATGACCCCCC-T
+CAGAT-AGGGGTCCCTTGACCACCATCC
+>BRO3_1
+ATTCTAATTTAAACTATTCT-CTGTTCTTTCATGGGGAAGCAGATTTGGG
+TACCACCCAAGTATTGACTCACCCATCAACAACCGCTATGTATTTCGTAC
+ATTAC-TGCCAGCCACCATGAATATTGTACGGTACCATAAA-TACTTGAC
+CACCTGTAGTACATAAAAACCC-AATCC--ACATCAAAA----CCCCCCC
+CC-CATGCTTACAAGCAAGTACAGCAACCAACCCTCAA-CTATCACACAT
+CAGCTGCAACTCCAAAGCCAC-CCCTCACCCAC-TAGGATACCAACAAAC
+CTACCCACCC-TTAACAGTACATAGTACATAAAGCCATTTACCGTACATA
+GCACATTACA-GTCAAATCCCTTCTCGTCCCC-ATGG-ATGACCCCCC-T
+CAGAT-AGGGGTCCCTTGACCACCATCC
+>BRO4
+ATTCTAATTTAAACTATTCT-CTGTTCTTTCATGGGGAAGCAGATTTGGG
+TACCACCCAAGTATTGACTCACCCATCAACAACCGCTATGTATTTCGTAC
+ATTAC-TGCCAGCCACCATGAATATTGTACGGTACCATAAA-TACTTGAC
+CACCTGTAGTACATAAAAACCC-AATCC--ACATCAAAA----CCCCCCC
+CC-CATGCTTACAAGCAAGTACAGCAACCAACCCTCAA-CTATCATACAT
+CAACTGCAACTCCAAAGCCAC-CCCTCACCCAC-TAGGATACCAACAAAC
+CTACCCACCC-TTAACAGTACATAGTACATAAAGCCATTTACCGTACATA
+GCACATTACA-GTCAAATCCCTTCTCGTCCCC-ATGG-ATGACCCCCC-T
+CAGAT-AGGGGTCCCTTGACCACCATCC
+>BRO5
+ATTCTAATTTAAACTATTCT-CTGTTCTTTCATGGGGAAGCAGATTTGGG
+TACCACCCAAGTATTGACTCACCCATCAACAACCGCTATGTATTTCGTAC
+ATTAC-TGCCAGCCACCATGAATATTGTACAGTACCATAAA-TACTTGAC
+CACCTGTAGTACATAAAAACCC-AATCC--ACACCAAAA----CCCCCCC
+CC-CATGCTTACAAGCAAGTACAGCAACCAACCCTCAA-CTATCACACAT
+CAACTGCAACTCCAAAGCCAC-CCCTCACCCAC-TAGGATACCAACAAAC
+CTACCCACCC-TTAACAGTACATAGTACATAAAGCCATTTACCGTACATA
+GCACATTACA-GTCAAATCCCTTCTCGTCCCC-ATGG-ATGACCCCCC-T
+CAGAT-AGGGGTCCCTTGACCACCATCC
+>BRO6
+ATTCTAATTTAAACTATTCT-CTGTTCTTTCATGGGGAAGCAGATTTGGG
+TACCACCCAAGTATTGACTCACCCATCAACAACCGCTATGTATTTCGTAC
+ATTAC-TGCCAGCCACCATGAATATTGTACGGTACCATAAA-TACTTGAC
+CACCTGTAATACATAAAAACCC-AATTC--ACACCAAAA----CCCCCCC
+CC-CATGCTTACAAGCAAGTACAGCAACCAACCCTCAA-CTATCACACAT
+CAACTGCAACTCCAAAGCCAC-CCCTCACCCAC-TAGGATACCAACAAAC
+CTACCCACCC-TTAACAGTACATAGTACATAAAGCCATTTACCGTACATA
+GCACATTACA-GTCAAATCCCTTCTCGTCCCC-ATGG-ATGACCCCCC-T
+CAGAT-AGGGGTCCCTTGACCACCATCC
+>BRO7_1
+ATTCTAATTTAAACTATTCT-CTGTTCTTTCATGGGGAAGCAGATTTGGG
+TACCACCCAAGTATTGACTCACCCATCAACAACCGCTATGTATTTCGTAC
+ATTAC-TGCCAGCCACCATGAATATTGTACGGTACCATAAA-TACTTGAC
+CACCTGTAGTACATAAAAACCC-AATCC--ACACCAAAA----CCCCCCC
+CC-CATGCTTACAAGCAAGTACAGCAACCAACCCTCAA-CTATCACACAT
+CAACTGCAACTCCAAAGCCAC-CCCTCACCCAC-TAGGATACCAACAAAC
+CTACCCACCC-TTAACAGTACATAGTACATAAAGCCATTTACCGTACATA
+GCACATTACA-GTCAAATCCCTTCTCGTCCCC-ATGG-ATGACCCCCC-T
+CAGAT-AGGGGTCCCTTGACCACCATCC
+>BRO8
+ATTCTAATTTAAACTATTCT-CTGTTCTTTCATGGGGAAGCAGATTTGGG
+TACCACCCAAGTATTGACTCACCCATCAACAACCGCTATGTATTTCGTAC
+ATTAC-TGCCAGCCACCATGAATATTGTACGGTACCATAAA-TACTTGAC
+CACCTGTAGTACATAAAAACCC-AATCC--ACATCAAAA----CCCCCCC
+CC-CATGCTTACAAGCAAGTACAGCAACCAACCCTCAA-CTATCACACAT
+CAACTGCAACTCCAAAGCCAC-CCCTCACCCAC-TAGAATACCAACAAAC
+CTACCCACCC-TTAACAGTACATAGTACATAAAGCCATTTACCGTACATA
+GCACATTACA-GTCAAATCCCTTCTCGTCCCC-ATGG-ATGACCCCCC-T
+CAGAT-AGGGGTCCCTTGACCACCATCC
+>BRO9
+ATTCTAATTTAAACTATTCT-CTGTTCTTTCATGGGGAAGCAGATTTGGG
+TACCACCCAAGTATTGACTCACCCATCAACAACCGCTATGTATTTCGTAC
+ATTAC-TGCCAGCCACCATGAATATTGTACGGTACCATAAA-TACTTGAC
+CACCTGTAGTACATAAAAACCC-AACCC--ACATCAAAA----CCCCCCC
+CC-CATGCTTACAAGCAAGTACAGCAACCAACCCTCAA-CTATCACACAT
+CAATTGCAACTCCAAAGCCAC-CCCTCACCCAC-TAGGATACCAACAAAC
+CTACCCACCC-TTAACAGTACATAGTACATAAAGCCATTTACCGTACATA
+GCACATTACA-GTCAAATCCCTTCTCGTCCCC-ATGG-ATGACCCCCC-T
+CAGAT-AGGGGTCCCTTGACCACCATCC
+>BRO10
+ATTCTAATTTAAACTATTCT-CTGTTCTTTCATGGGGAAGCAGATTTGGG
+TACCACCCAAGTATTGACTCACCCATCAACAACCGCTATGTATTTCGTAC
+ATTAC-TGCCAGCCACCATGAATATTGTACGGTACCATAAA-TACTTGAC
+CACCTGTAGTACATAAAAACCC-AATCC--ACATCAAAA----CCCCCCC
+CC-CATGCTTACAAGCAAGTACAGCAATCAACCTTCAA-CTATCACACAT
+CAACTGCAACTCCAAAGCCAC-CCCTCACCCAC-TAGGATACCAACAAAC
+CTACCCACCC-TTAACAGTACATAGCACATAAAGCCATTTATCGTACATA
+GCACATTACA-GTCAAATCCCTTCTCGTCCCC-ATGG-ATGACCCCCC-T
+CAGAT-AGGGGTCCCTTGACCACCATCC
+>BRO11_1
+ATTCTAATTTAAACTATTCT-CTGTTCTTTCATGGGGAAGCAGATTTGGG
+TACCACCCAAGTATTGACTCACCCATCAACAACCGCTATGTATTTCGTAC
+ATTAC-TGCCAGCCACCATGAATATTGTACGGTACCATAAA-TACTTGAC
+TACCTGTAGTACATAAAAACCC-AACCC--ACATCAAAA----CCCTGCC
+CC-CATGCTTACAAGCAAGTACAGCAATCAACCTTCAA-CTGTCACACAT
+CAACTGCAACTCCAAAGCCAC-CCCTCACCCAC-TAGGATACCAACAAAC
+CTACCCACCC-TTAACAGTACATAGCACATAAAGTCATTTACCGTACATA
+GCACATTACA-GTCAAATCCCTTCTCGTCCCC-ATGG-ATGACCCCCC-T
+CAGAT-AGGGGTCCCTTGACCACCATCC
+>BRO12
+ATTCTAATTTAAACTATTCT-CTGTTCTTTCATGGGGAAGCAGATTTGGG
+TACCACCCAAGTATTGACTCACCCATCAACAACCGCTATGTATTTCGTAC
+ATTAC-TGCCAGCCACCATGAATATTGTACAGTACCATAAA-TACTTGAC
+TACCTGTAGTACATAAAAACCC-AATCC--ACATCAAAA----CCCCCTC
+CC-CATGCTTACAAGCAAGTACAGCAATCAACCTTCAA-CTATCACACAT
+CAACTGCAACTCCAAAGCCAC-CCCTCACCCAC-TAGGATACCAACAAAC
+CTACCCACCC-TTAACAGTACATAGTACATAAAGCCATTTACCGTACATA
+GCACATTACA-GTCAAATCCCTTCTCGTCCCC-ATGG-ATGACCCCCC-T
+CAGAT-AGGGGTCCCTTGACCACCATCC
\ No newline at end of file
diff -r bece0bad8e89 -r 3285fd1f4bde test-data/gard-out1.nex
--- a/test-data/gard-out1.nex Mon Feb 17 14:52:11 2020 -0500
+++ b/test-data/gard-out1.nex Thu Feb 20 18:10:47 2020 -0500
@@ -1,50 +0,0 @@
-#NEXUS
-
-BEGIN TAXA;
- DIMENSIONS NTAX = 21;
- TAXLABELS
- 'TREESPARROW_HENAN_1_2004' 'TREESPARROW_HENAN_3_2004' 'TREESPARROW_HENAN_4_2004' 'CHICKEN_HEBEI_326_2005' 'SWINE_ANHUI_2004' 'TREESPARROW_HENAN_2_2004' 'CHICKEN_HONGKONG_915_97' 'GOOSE_HONGKONG_W355_97' 'DUCK_HONGKONG_Y283_97' 'HONGKONG_97_98' 'HONGKONG_538_97' 'DUCK_GUANGZHOU_20_2005' 'GOOSE_SHANTOU_2216_2005' 'PEREGRINEFALCON_HK_D0028_2004' 'CK_HK_WF157_2003' 'HUMAN_VIETNAM_CL105_2005' 'DUCK_VIETNAM_376_2005' 'VIETNAM_3062_2004' 'MALLARD_VIETNAM_16_2003' 'CHICKEN_THAILAND_KANCHANABURI_CK_160_2005' 'DUCK_VIETNAM_272_2005' ;
-END;
-
-BEGIN CHARACTERS;
- DIMENSIONS NCHAR = 1698;
- FORMAT
- DATATYPE = DNA
- GAP=-
- MISSING=?
- ;
-
-MATRIX
- 'TREESPARROW_HENAN_1_2004' ATGGAGAAAATAGTGCTTCTTCGTGCAATGATCAATCTTGTTAAAAGTGATCAGATTGGCGTTGGTTACCATGCAGACTACTCGACAGAGCAGGGTGACACAATAATGGAAAAGAACGTTACTGTTACACATGCTCAAGACATATTGGAAAAGACACACAACGGGAAGCTCTGCGACCTAGATGGAGTGAAGCCTCTAATTTTGAAAGATTGTAGTGTAGCTGGATGGCTCCTCGGAAACCCAATGTGTGACGAATTCATCAATGTGCCGGAGTGGTCTTACATAGTGGAGAAGGCCAGTCCAGCCAATGACCTCTGTTACCCAGGGGATTTCAACGACTATGAAGAACTGAAACACCTATTGAGCAGAATAAACCATTTTGAAAAAATTCAGATCATCCCCAAAAGTTCTTGGTCCGATCATGAAGCCTCATCAGGGGTGAGCTCAGCATGTCCATACCTGGGGAAGCCCTCCTTTTTCAGAAATGTGGTATGGCTTATCAAAAAGAACAGTACATACCCAACAATAAAGAGGGGCTACAATAATACCAACCCAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCGGCAGAGCAGATAAAGCTCTATCAAAACCCAACCACCTATATTTCCGTTGGAACATCAACACTAAACCAGAGATTGGTACCAAAAATAGCTACTAGATCCAAAGTAAATGGGCAAAGTGGAAGAATGGAGTTCTTCTGGACAATTTTAAAGCCGAATGACGCTATCAACTTCGAGAGTAATGGAAATTTCATTGCTCCAGAATATGCATACCAAATTGTCAAGAAAGGGGACTCAGCAATTATGAAAAGTGAATTGGAATATGGTAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCGATAAACTCTAGTATGCCATTCCACAACATACACCCTCTCACCATCGGGGAATGCCCCAAATATGTGAAATCAAACAGATTAGTCCTTGCGACAGGGCTCAGAAATAGCCCTCAAAGAGAGAGAAGAAGAAAAAAGAGAGGACTATTTGGAGCTATAGCAGGTTTTATAGAGGGAGGATGGCAGGGAATGGTAGATGGTTGGTATGGGTACCACCATAGCAATGAGCAGGGGAGTGGATACGCTGCAGACAAAGAATCCACTCAAAAAGCAATAGATGGAGTCACCAATAAGGTCAACTCGATCATTGACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAATAACTTAGAAAGGAGAATAGAAAATTTAAACAAGAAGATGGAGGACGGATTCCTAGATGTCTGGACTTATAATGCTGAACTTCTGGTTCTCATGGAAAATGAGAGAACTCTAGACTTTCATGACTCAAATGTCAAGAACCTTTACGAAAAGGTCCGACTACAACTTAGGGATAATGCAAAGGAGCTGGGTAACGGTTGTTTCGAGTTCTATCACAAATGTGATAATGAATGTATGGAAAGTGTAAAAAACGGAACGTATGACTACCCGCAGTATTCAGAAGAAGCAAGACTAAACAGAGAGGAAATAAGTGGAGTAAAATTGGAATCAATAGGAACTTACCAAATACTGTCAATTTATTCAACAGTGGCGAGTTCCCTAGCACTGGCAATCATGGTAGCTGGTCTATCTTTATGGATGTGCTCCAATGGATCGTTACAATGCAGAATT
- 'TREESPARROW_HENAN_3_2004' ATGGAGAAAATAGTGCTTCTTCTTGCAATAGTCAGTCTTGTTAAAAGTGATCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACACTATAATGGAAAAGAACGTTACTGTTACACATGCCCAAGACATACTGGAAAAGACACACAACGGGAAGCTCTGCGATCTAGATGGAGTGAAGCCTCTAATTTTGAGAGATTGTAGTGTAGCTGGATGGCTCCTCGGAAACCCAATGTGTGACGAATTCATCAATGTGCCGGAATGGTCTTACATAGTGGAGAAGGCCAGTCCAGCCAATGACCTCTGTTACCCAGGGGATTTCAACGACTATGAAGAACTGAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCGGATCATCCCCAAAAGTTCTTGGTCCAATCATGATGCCTCATCAGGGGTGAGCTCAGCATGTCCATACCAGGGGAAGCCCTCCTTTTTCAGAAATGTGGTATGGCTTATCAAAAAGAACAGTACATACCCAACGATAAAGAGGAGCTACAATAATACCAACCCAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCGGCAGAGCAGATAAAGCTCTATCAAAACCCAACCACCTATATTTCCGTTGGAACATCAACACTAAACCAGAGATTGGTACCAAAAATAGCTACTAGATCCAAAGTAAATGGGCAAAGTGGAAGAATGGAGTTCTTCTGGACAATTTTAAAGCCGAATGACGCTATCAACTTCGAGAGTAATGGAAATTTCATTGCTCCAGAATATGCATACAAAATTGTCAAGAAAGGGGACTCAGCAATTATGAAAAGTGAATTGGAATATGGTAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCGATAAATTCTAGTATGCCATTCCACAACATACACCCTCTCACCATCGGGGAATGCCCCAAATATGTGAAATCAAACAGATTAGTCCTTGCGACAGGGCTCAGAAATAGCCCTCAAAGAGAGGGAAGAAGAAAAAAGAGAGGACTATTTGGAGCTATAGCAGGTTTTATAGAGGGAGGATGGCAGGGAATGGTAGATGGTTGGTATGGGTACCACCATAGCAATGAGCAGGGGAGTGGATACGCTGCAGACAAAGAATCCACTCAAAAAGCAATAGATGGAGTCACCAATAAGGTCAACTCGATCATTGACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAATAACTTAGAAAGGAGAATAGAAAATTTAAACAAGAAGATGGAGGACGGATTCCTAGATGTCTGGACTTATAATGCTGAACTTCTGGTTCTCATGGAAAATGAGAGAACTCTAGACTTTCATGACTCAAATGTCAAGAACCTTTACGAAAAGGTCCGACTACAACTTAGGGATAATGCAAAGGAGCTGGGTAACGGTTGTTTCGAGTTCTATCACAAATGTGATAATGAATGTATGGAAAGTGTAAAAAACGGAACGTATGACTACCCGCAGTATACGGAAGAAGCAAGACTAAACAGAGAGGAAATAAGTGGAGTAAAATTGGAATCAATAGGAACTTACCAAATACTGTCAATTTATTCAACAGTAGTGAGTTCCCTAGCACTGGCAATCATGGTAGCTGGTCTATCTTTATGGATGTGCTCCAATGGATCGTTACAATGCAGAATT
- 'TREESPARROW_HENAN_4_2004' ATGGAGAAAATAGTGCTTCTTCTTGCAATAGTCAGTCTTGTTAAAAGTGATCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACACAATAATGCAAAAGAACGTTACTGTTACACATGCCCAAGACATACTGGAAAAGACACACAACGGGAAGCTCTGCGATCTAGATGGAGTGAAACCTCTAATTTTAAGAGATTGTAGTGTAGCTGGATGGCTCCTCGGAAACCCAATGTGTGACGAATTCATCAATGTGCCGGAATGGTCTTACATAGTGGAGAAGGCCAGTCCAGCCAATGACCTCTGTTACCCAGGGGATTTCAACGACTATGAAGAACTGAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCCCCAAAAGTTCTTGGTCCGATCATGAAGCCTCATCAGGGGTGAGCTCAGCATGTCCATACCAGGGGAGTCCCTCCTTTTTCAGAAATGTGGTATGGCTTATCAAAAAGAACAGTGCATACCCAACAATAAAGAGGAGCTACAATAATACCAACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCGGCAGAGCAGACAAAGCTCTATCAAAACCCAACCACCTATATTTCCGTTGGAACATCAACACTAAACCAGAGATTGGTACCAAAAATAGCTACTAGATCCAAAGTAAATGGGCAAAGTGGAAGAATGGAGTTCTTCTGGACAATTTTAAAGCCGAATGACGCTATCAACTTCGAGAGTAATGGAAATTTCATTGCTCCAGAATATGCATACAAAATTGTCAAGAAAGGGGACTCAGCAATTATGAAAAGTGAATTGGAATATGGTAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCGATAAACTCTAGTATGCCATTCCACAACATACACCCTCTCACCATCGGGGAATGCCCCAAATATGTGAAATCAAACAGATTAGTCCTTGCGACAGGGCTCAGAAATAGCCCTCAAAGAGAGAGAAGAAGAAAAAAGAGAGGACTATTTGGAGCTATAGCAGGTTTTATAGAGGGAGGATGGCAGGGAATGGTAGATGGTTGGTATGGGTACCACCATAGCAATGAGCAGGGGAGTGGATACGCTGCAGACAAAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCGATCATTGACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAATAACTTAGAAAGGAGAATAGAAAATTTAAACAAGAAGATGGAGGACGGATTCCTAGATGTCTGGACTTATAATGCTGAACTTCTGGTTCTCATGGAAAATGAGAGAACTCTAGACTTTCATGACTCAAATGTCAAGAACCTTTACGAAAAGGTCCGACTACAACTTAGGGATAATGCAAAGGAGCTGGGTAACGGTTGTTTCGAGTTCTATCACAAATGTGATAATGAATGTATGGAAAGTGTAAAAAACGGAACGTATGACTACCCGCAGTATTCAGAAGAAGCAAGACTAAACAGAGAGGAAATAAGTGGAGTAAAATTGGAATCAATAGGAACTTACCAAATACTGTCAATTTATTCAACAGTGGTGAGTTCCCTAGCACTGGCAATCATGGTAGCTGGTCTATCTTTATGGATGTGCTCCAATGGATCGTTACAATGCAGAATT
- 'CHICKEN_HEBEI_326_2005' ATGGAGAGAATAGTGCTTCTTCTTGCAATAATCGGTCTTGTTAAAAGTGATCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACACAATAATGGAAAAGAACGTTACTGTTACACATGCTCAAGACATACTGGAGAAGACACACAACGGGAAGCTCTGCAACCCAGATGGAGTGAAGCCTCTAATTTTGAAAGATTGTAGTGTAGCTGGATGGCTCCTCGGAAACCCAATGTGTGACGAATTTATCAATGTGCCGGAATGGTCTTACATAGTGGAGAAGGCCAGTCCAGCCAATGGCCTCTGTTACCCAGGGGATTTCAATGACTATGAAGAACTGAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCCCCAAAAGTTCTTGGTCCGATCATGGAGCCTCATCAGGGGTGAGCTCAGCATGTTCCTATCTGGGGAAGCCCTCCTTTTTCAGAAATGTGGTATGGCTTATCAAAAAGAATAATACATACCCACCAATAAAGGTGAGCTACAACAATACCAACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCCAATGATGAGGCAGAGCAGATAAAGATCTATCAAAACCCAACCACCTATATTTCCGTTGGAACATCAACACTAAACCAGAGATTGGTACCAAAAATAGCTACTAGATCCAAAGTAAACGGGCAAAGTGGAAGAATGGAGTTCTTCTGGACAATTTTAAAGCCGAATGATGCTATCAATTTCGATAGTAATGGAAATTTCATTGCTCCAGAATATGCATACAAAATTGTCAAGAAAGGGGACTCAGCGATTATGAAAAGTGAATTGGAATATGGCAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCGATAAATTCTAGTATGCCATTCCACAACATACACCCTCTCACCGTCGGGGAATGCCCCAAATATGTGAAATCAAACAGATTAGTCCTCGCGACTGGACTCAGAAATGCCCCTCAAAGAGAGGGAGGAAGAAAAAAGAGAGGACTATTTGGAGCCATAGCAGGGTTTATAGAGGGAGGATGGCAGGGAATGGTAGATGGTTGGTATGGGTACCACCATAGCAATGAGCAGGGGAGTGGATACGCTGCAGACAAAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCGATCATTGACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAATAACTTAGAAAGGAGAATAGAAAATTTAAACAAGAAGATGGAGGACGGATTCCTAGATGTCTGGACTTATAACGCTGAACTTCTGGTTCTCATGGAAAATGAGAGAACTCTAGACTTTCATGACTCAAATGTCAAGAACCTTTACGAAAAGGTCCGACTACAGCTTAGGGATAATGCAAAGGAGCTGGGTAACGGTTGTTTCGAGTTCTATCACAAATGTGATAATGAATGTATGGAAAGTGTAAAAAACGGAACGTATGACTACCCGCAGTATTCAGAAGAAGCAAGACTAAACAGAGAGGAAATAAGTGGAGTAAAATTGGAATCAATGGGAACTTACCAAATACTGTCAATTTATTCAACAGTGGCGAGTTCCCTAGCATTGGCAATCATGGTAGCTGGTCTATCTTTATGGATGTGCTCCAATGGATCGTTACAATGCAGAATT
- 'SWINE_ANHUI_2004' ATGGAGAAAATAGTGCTTCTTCTTGCAATAGTCAGTCTTGTTAAAGGTGATCAGATTTGCACTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACACAATAATGGAAAAGAACGTTACTGTTACACATGCTCAAGACATACTGGAAAAGACACACAACGGGAAGCTCTGCGACCTAGATGGAGTGAAGCCTCTAATTTTAAGAGATTGTAGTGTAGCTGGATGGCTCCTCGGGAACCCAATGTGTGACGAATTCATCAATGTGCCGGAATGGTCTTACATAGTGGAGAAGGCCAATCCAGCCAATGACCTCTGTTACCCAGGGGATTTCAACGACTATGAAGAACTGAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCCCCAAAAGTTCTTGGTCCGATCATGAAGCCTCATCAGGGGTGAGCTCAGCATGTCCATACCAGGGAAGGTCCTCCTTTTTCAGAAATGTGGTATGGCTTATCAAAAAGAACAGTGCATACCCAACAATAAAGAGGAGCTACAATAATACCAACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCACCCTAATGATGCGGCAGAGCAGATAAAGCTCTATCAAAACCCAACCACCTATATTTCCGTTGGGACATCAACACTAAACCAGAGATTGGTACCAAAAATAGCTACTAGATCCAAAGTAAACGGACAAAGTGGAAGAATGGAGTTCTTCTGGACAATTTTAAAACCGAATGATGCTATCAATTTCGAGAGTAATGGAAATTTCATTGCTCCAGAATATGCATACAAAATTGTCAAGAAAGGGGACTCTGCAATTATGAAAAGTGAATTGGAATATGGCAACTGCAACACCAAGTGTCAAACTCCAGTGGGGGCGATAAATTCTAGCATGCCATTCCACAACATACACCCTCTCACCATCGGGGAATGCCCCAAATATGTGAAATCAAACAGATTAGTCCTTGCGACTGGACTCAGAAATGCCCCTCAAAGAGAGGGAAGAAGAAAAAAGAGAGGACTATTTGGAGCTATAGCAGGGTTTATAGAGGGAGGATGGCAGGGGATGGTAGATGGTTGGTATGGGTACCACCATAGCAATGAGCAGGGGAGTGGATACGCTGCAGACAAAGAATCCACTCAAAAAGCAATAGATGGAGTCACCAATAAGGTCAACTCGATCATTGACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAATAACTTAGAAAGGAGAATAGAAAATTTAAACAAGAAGATGGAGGACGGATTCCTAGATGTCTGGACTTATAATGCTGAACTTCTGGTTCTCATGGAAAATGAGAGAACTCTAGACTTTCATGACTCAAATGTCAAGAACCTTTACGACAAGGTCCGACTACAGCTTAGGGATAATGCAAAGGAGCTGGGTAACGGTTGTTTCGAGTTCTATCACAGATGTGATAATGAATGTATGGAAAGTGTAAGAAACGGAACGTATGACTACCCGCAGTATTCGGAAGAAGCAAGACTAAACAGAGAGGAAATAAGTGGAGTAAAATTGGAATCAATAGGAACTTACCAAATACTGTCAATTTATTCAACAGTGGCGAGTTCCCTAGCACTGGCAATCATGGTGGCTGGTCTATCTTTATGGATGTGCTCCAATGGATCGTTACAATGCAGAATT
- 'TREESPARROW_HENAN_2_2004' ATGGAGAAAATAGTGCTTCTTCTTGCAATAGTCAGTCTTGTTAAAAGTGATCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACACAATAATGGAAAAGAACGTTACTGTTACACATGCTCAAGACATATTGGAAAAGACACACAACGGGAAGCTCTGCGACCTAGATGGAGTGAAGCCTCTAATTTTGAAAGATTGTAGTGTAGCTGGATGGCTCCTCGGAAACCCAATGTGTGACGAATTCATCAATGTGCCGGAGTGGTCTTACATAGTGGAGAAGGCCAGTCCAGCCAATGACCTCTGTTACCCAGGGGATTTCAACGACTATGAAGAACTGAAACACCTATTGAGCAGAATAAACCATTTTGAAAAAATTCAGATCATCCCCAAAAGTTCTTGGTCCGATCATGAAGCCTCATCAGGGGTGAGCTCAGCATGTCCATACCTGGGGAAGCCCTCCTTTTTCAGAAATGTGGTATGGCTTATCAAAAAGAACAGTACATACCCAACAATAAAGAGGGGCTACAATAATACCAACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCGGCAGAGCAGATAAAGCTCTATCAAAACCCAACCACCTATATTTCCGTTGGAACATCAACACTAAACCAGAGATTGGTACCAAAAATAGCTACTAGATCCAAAGTAAACGGACAAAGTGGAAGAATGGAGTTCTTCTGGACAATTTTAAAACCGAATGATGCTATCAATTTCGAGAGTAATGGAAATTTCATTGCTCCAGAATATGCATACAAAATTGTCAAGAAAGGGGACTCTGCAATTATGAAGAGTGAATTGGAATATGGCAACTGCAACACCAAGTGTCAAACTCCAGTGGGGGCGATAAATTCTAGCATGCCATTCCACAACATACACCCTCTCACCATCGGGGAATGCCCCAAATATGTGAAATCAAACAGATTAGTCCTTGCGACTGGACTCAGAAATGCCCCTCAAAGAGAGGGAAGAAGAAAAAAGAGAGGACTATTTGGAGCTATAGCAGGGTTTATAGAGGGAGGATGGCAGGGGATGGTAGATGGTTGGTATGGGTACCACCATAGCAATGAGCAGGGGAGTGGATACGCTGCAGACAAAGAATCCACTCAAAAAGCAATAGATGGAGTCACCAATAAGGTCAACTCGATCATTGACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAATAACTTAGAAAGGAGAATAGAAAATTTAAACAAGAAGATGGAGGACGGATTCCTAGATGTCTGGACTTATAATGCTGAACTTCTGGTTCTCATGGAAAATGAGAGAACTCTAGACTTTCATGACTCAAATGTCAAGAACCTTTACGAAAAGGTCCGACTACAACTTAGGGATAATGCAAAGGAGCTGGGTAACGGTTGTTTCGAGTTCTATCACAAATGTGATAATGAATGTATGGAAAGTGTAAAAAACGGAACGTATGACTACCGGCTGGACTCAGAAGAAGCAAGACTAAACAGAGAGGAAATAAGTGGAGTAAAATTGGAATCAATAGGAACTTACCAAATACTGTCAATTTATTCAACAGTGGCGAGTTCCCTAGCACTGGCAATCATGGTAGCTGGTCTATCTTTATGGATGTGCTCCAATGGATCGTTACAATGCAGAATT
- 'CHICKEN_HONGKONG_915_97' ATGGAGAAAATAGTGCTTCTTCTTGCAACAGTCAGTCTTGTTAAAAGTGATCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACACAATAATGGAAAAGAATGTTACTGTTACACATGCCCAAGACATACTGGAAAGGACACACAACGGGAAGCTCTGCGATCTAAATGGAGTGAAACCTCTCATTTTGAGGGATTGTAGTGTAGCTGGATGGCTCCTCGGAAACCCTATGTGTGACGAATTCATCAATGTGCCGGAATGGTCTTACATAGTGGAGAAGGCCAGTCCAGCCAATGACCTCTGTTATCCAGGGAATTTCAACGACTATGAAGAACTGAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCCCCAAAAGTTCTTGGTCCAATCATGATGCCTCATCAGGGGTGAGCTCAGCATGTCCATACCTTGGGAGGTCCTCCTTTTTCAGAAATGTGGTATGGCTTATCAAAAAGAACAGTGCATACCCAACAATAAAGAGGAGCTACAATAATACCAACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCGGCAGAGCAGACAAAGCTCTATCAAAATCCAACCACCTACATTTCCGTTGGAACATCAACACTGAACCAGAGATTGGTTCCAGAAATAGCTACTAGACCCAAAGTAAACGGGCAAAGTGGAAGAATGGAGTTCTTCTGGACAATTTTAAAGCCGAATGATGCCATCAATTTCGAGAGTAATGGAAATTTCATTGCCCCAGAATATGCATACAAAATTGTCAAGAAAGGGGACTCAACAATTATGAAAAGTGAATTGGAATATGGTAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCGATAAACTCTAGTATGCCATTCCACAACATACACCCCCTCACCATCGGGGAATGCCCCAAATATGTGAAATCAAACAGATTAGTTCTTGCGACTGGACTCAGAAATACCCCTCAAAGGGAGAGAAGAAGAAAAAAGAGAGGACTATTTGGAGCTATAGCAGGTTTTATAGAGGGAGGATGGCAGGGCATGGTAGATGGTTGGTATGGGTACCACCATAGCAATGAGCAGGGGAGTGGATACGCTGCAGACAAAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCGATCATTAACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAATAACTTAGAAAGGAGAATAGAGAATTTAAACAAGAAAATGGAAGACGGATTCCTAGATGTCTGGACTTACAATGCTGAACTTCTGGTTCTCATGGAAAATGAGAGAACTCTCGACTTTCATGACTCAAATGTCAAGAACCTTTACGACAAGGTCCGACTACAGCTTAGGGATAATGCAAAGGAACTGGGTAATGGTTGTTTCGAATTCTATCACAAATGTGATAATGAATGTATGGAAAGTGTAAAAAACGGAACGTATGACTACCCGCAGTATTCAGAAGAAGCAAGACTAAACAGAGAGGAAATAAGTGGAGTAAAATTGGAATCAATGGGAACTTACCAAATACTGTCAATTTATTCAACAGTGGCGAGTTCCCTAGCACTGGCAATCATGGTAGCTGGTCTATCTTTATGGATGTGCTCCAATGGATCGTTACAATGCAGAATT
- 'GOOSE_HONGKONG_W355_97' ATGGAGAAAATAGTGCTTCTTCTTGCAACAGTCAGTCTTGTTAAAAGTGATCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACACAATAATGGAAAAGAATGTTACTGTTACACATGCCCAAGACATACTGGAAAGGACACACAACGGGAAGCTCTGCGATCTAAATGGAGTGAAACCTCTCATTTTGAGGGATTGTAGTGTAGCTGGATGGCTCCTCGGAAACCCTATGTGTGACGAATTCATCAATGTGCCGGAATGGTCTTACATAGTGGAGAAGGCCAGTCCAGCCAATGACCTCTGTTATCCAGGGAATTTCAACGACTATGAAGAACTGAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCCCCAAAAGTTCTTGGTCCAATCATGATGCCTCATCAGGGGTTAGCTCAGCATGTCCATACCTTGGGAGGTCCTCCTTTTTCAGAAATGTGGTATGGCTTATCAAAAAGAACAGTGCATACCCAACAATAAAGAGGAGCTACAATAATACCAACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCGGCAGAGCAGACAAAGCTTTATCAAAATCCAACCACCTACATTTCCGTTGGAACATCAACACTGAACCAGAGATTGGTTCCAGAAATAGCTACTAGACCCAAAGTAAACGGGCAAAGTGGAAGAATGGAGTTCTTCTGGACAATTTTAAAGCCGAATGATGCCATCAATTTCGAGAGTAATGGAAATTTCATTGCCCCAGAATATGCATACAAAATTGTCAAGAAAGGGGACTCAACAATTATGAAAAGTGAATTGGAATATGGTAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCGATAAACTCTAGTATGCCATTCCACAACATACACCCCCTCACCATCGGGGAATGCCCCAAATATGTGAAATCAAACAGATTAGTTCTTGCGACTGGACTCAGAAATACCCCTCAAAGGGAGAGAAGAAGAAAAAAGAGAGGACTATTTGGAGCTATAGCAGGTTTTATAGAGGGAGGATGGCAGGGCATGGTAGATGGTTGGTATGGGTACCACCATAGCAATGAGCAGGGGAGTGGATACGCTGCAGACAAAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCGATCATTAACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAATAACTTAGAAAGGAGAATAGAGAATTTAAACAAGAAAATGGAAGACGGATTCCTAGATGTCTGGACTTACAATGCTGAACTTCTGGTTCTCATGGAAAATGAGAGAACTCTCGACTTTCATGACTCAAATGTCAAGAACCTTTACGACAAGGTCCGACTACAGCTTAGGGATAATGCAAAGGAACTGGGTAATGGTTGTTTCGAATTCTATCACAAATGTGATAATGAATGTATGGAAAGTGTAAGAAACGGAACGTATGACTACCCGCAGTATTCAGAAGAAGCAAGACTAAACAGAGAGGAAATAAGTGGAGTAAAATTGGAATCAATGGGAACTTACCAAATACTGTCAATTTATTCAACAGTGGCGAGTTCCCTAGCACTGGCAATCATGGTAGCTGGTCTATCTTTATGGATGTGCTCCAATGGATCGTTACAATGCAGAATT
- 'DUCK_HONGKONG_Y283_97' ATGGAGAAAATAGTGCTTCTTCTTGCAACAGTCAGTCTTGTTAAAAGTGATCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACACAATAATGGAAAAGAATGTTACTGTTACACATGCCCAAGACATACTGGAAAGGACACACAACGGGAAGCTCTGCGATCTAAATGGAGTGAAACCTCTCATTTTGAGGGATTGTAGTGTAGCTGGATGGCTCCTCGGAAACCCTATGTGTGACGAATTCATCAATGTGCCGGAATGGTCTTACATAGTGGAGAAGGCCAGTCCAGCCAATGACCTCTGTTATCCAGGGAATTTCAACGACTATGAAGAACTGAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCCCCAAAAGTTCTTGGTCCAATCATGATGCCTCATCAGGGGTTAGCTCAGCATGTCCATACCTTGGGAGGTCCTCCTTTTTCAGAAATGTGGTATGGCTTATCAAAAAGAACAGTGCATACCCAACAATAAAGAGGAGCTACAATAATACCAACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCGGCAGAGCAGACAAAGCTTTATCAAAATCCAACCACCTACATTTCCGTTGGAACATCAACACTGAACCAGAGATTGGTTCCAGAAATAGCTACTAGACCCAAAGTAAACGGGCAAAGTGGAAGAATGGAGTTCTTCTGGACAATTTTAAAGCCGAATGATGCCATCAATTTCGAGAGTAATGGAAATTTCATTGCCCCAGAATATGCATACAAAATTGTCAAGAAAGGGGACTCAACAATTATGAAAAGTGAATTGGAATATGGTAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCGATAAACTCTAGTATGCCATTCCACAACATACACCCCCTCACCATCGGGGAATGCCCCAAATATGTGAAATCAAACAGATTAGTTCTTGCGACTGGACTCAGAAATACCCCTCAAAGGGAGAGAAGAAGAAAAAAGAGAGGACTATTTGGAGCTATAGCAGGTTTTATAGAGGGAGGATGGCAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
- 'HONGKONG_97_98' ------------------------------------------------GACCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGATACAATAATGGAAAAGAATGTTACTGTTACACATGCCCAAGACATACTGGAAAGGACACACGACGGGAAGCTCTGCGATCTAAATGGAGTGAAACCTCTCATTTTGAGGGATTGTAGTGTAGCTGGATGGCTCCTCGGAAACCCTATGTGTGACGAATTCATCAATGTGCCGGAATGGTCTTACATAGTGGAGAAGGCCAGTCCAGCCAATGACCTCTGTTATCCAGGGAATTTCAACGACTATGAAGAACTGAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCCCCAAAAGTTCTTGGTCCAATCATGATGCCTCATCAGGGGTGAGCTCAGCATGTCCATACCTTGGGAGGTCCTCCTTTTTCAGAAATGTGGTATGGCTTATCAAAAAGAACAGTGCATACCCAACAATAAAGAGGAGCTACAATAATACCAACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCGGCAGAGCAGACAAAGCTCTATCAAAATCCAACCACCTACATTTCCGTTGGAACATCAACACTGAATCAGAGATTGGTTCCAGAAATAGCTACTAGACCCAAAGTAAACGGGCAAAGTGGAAGAATGGAGTTCTTCTGGACAATTTTAAAGCCGAATGATGCCATCAATTTCGAGAGTAATGGAAATTTCATTGCCCCAGAATATGCATACAAAATTGTCAAGAAAGGGGACTCAACAATTATGAAAAGTGAATTGGAATATGGTAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCGATAAACTCTAGTATGCCATTCCACAACATACACCCCCTCACCATCGGGGAATGCCCCAAATATGTGAAATCAAACAGATTAGTTCTTGCGACTGGACTCAGAAATACCCCTCATAGGGAGAGAAGAAGAAAAAAGAGAGGACTATTTGGAGCTATAGCAGGTTTTATAGAAGGAGGATGGCAGGGAATGGTAGATGGTTGGTATGGGTACCACCATAGCAATGAGCAGGGGAGTGGATACGCTGCAGACCAAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCGATCATTAACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAATAACTTAGAAAGGAGAATAGAGAATTTAAACAAGAAAATGGAAGACGGATTCCTAGATGTCTGGACTTACAATGCTGAACTTCTGGTTCTCATGGAAAATGAGAGAACTCTCGACTTTCATGACTCAAATGTCAAGAACCTTTACGACAAGGTCCGACTACAGCTTAGGGATAATGCAAAGGAACTGGGTAATGGTTGTTTCGAATTCTATCACAAATGTGATAATGAATGTATGGAAAGTGTAAAAAACGGAACGTATGACTACCCGCAGTATTCAGAAGAAGCAAGACTAAACAGAGAGGAAATAAGTGGAGTAAAATTGGAATCAATGGGAACTTACCAAATACTGTCAATTTATTCAACAGTGGCGAGTTCCCTAGCACTGGCAATCATGGTAGCTGGTCTATCTTTATGGATGTGCTCCAATGGATCGTTACAATGCAGAATT
- 'HONGKONG_538_97' ------------------------------------------------GATCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACACAATAATGGAAAAGAATGTTACTGTTACACATGCCCAAGACATACTGGAAAGGACACACAACGGGAAGCTCTGCGATCTAAATGGAGTGAAACCTCTCATTTTGAGGGATTGTAGTGTAGCTGGATGGCTCCTCGGAAACCCTATGTGTGACGAATTCATCAATGTGCCGGAATGGTCTTACATAGTGGAGAAGGCCAGTCCAGCCAATGACCTCTGTTATCCAGGGAATTTCAACGACTATGAAGAACTGAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCCCCAAAAGTTCTTGGTCCAATCATGATGCCTCATCAGGGGTGAGCTCAGCATGTCCATACCTTGGGAGGTCCTCCTTTTTCAGAAATGTGGTATGGCTTATCAAAAAGAACAGTGCATACCCAACAATAAAGAGGAGCTACAATAATACCAACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCGGCAGAGCAGACAAAGCTCTATCAAAATCCAACCACCTACATTTCCGTTGGAACATCAACACTGAACCAGAGATTGGTTCCAGAAATAGCTACTAGACCCAAAGTAAACGGGCAAAGTGGAAGAATGGAGTTCTTCTGGACAATTTTAAAGCCGAATGATGCCATCAATTTCGAGAGTAATGGAAATTTCATTGCCCCAGAATATGCATACAAAATTGTCAAGAAAGGGGACTCAACAATTATGAAAAGTGAATTGGAATATGGTAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCGATAAACTCTAGTATGCCATTCCACAACATACACCCCCTCACCATCGGGGAATGCCCCAAATATGTGAAATCAAACAGATTAGTTCTTGCGACTGGACTCAGAAATACCCCTCAAAGGGAGAGAAGAAGAAAAAAGAGAGGACTATTTGGAGCTATAGCAGGTTTTATAGAGGGAGGATGGCAGGGAATGGTAGATGGTTGGTATGGGTACCACCATAGCAATGAGCAGGGGAGTGGATACGCTGCAGACCAAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCGATCATTAACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAATAACTTAGAAAGGAGAATAGAGAATTTAAACAAGAAAATGGAAGACGGATTCCTAGATGTCTGGACTTACAATGCTGAACTTCTGGTTCTCATGGAAAATGAGAGAACTCTCGACTTTCATGACTCAAATGTCAAGAACCTTTACGACAAGGTCCGACTACAGCTTAGGGATAATGCAAAGGAACTGGGTAATGGTTGTTTCGAATTCTATCACAAATGTGATAATGAATGTATGGAAAGTGTAAGAAACGGAACGTATGACTACCCGCAGTATTCAGAAGAAGCAAGACTAAACAGAGAGGAAATAAGTGGAGTAAAATTGGAATCAATGGGAACTTACCAAATACTGTCAATTTATTCAACAGTGGCGAGTTCCCTAGCACTGGCAATCATGGTAGCTGGTCTATCTTTATGGATGTGCTCCAATGGATCGTTACAATGCAGAATT
- 'DUCK_GUANGZHOU_20_2005' ATGGAGAAAATAGTGCTTCTTCTTGCAATAGTCAGTCTTGTTAAAAGTGATCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACACAATAATGGAAAAGAACGTTACTGTTACACATGCCCAAGACATACTGGAAAAGACACACAATGGGAAGCTCTGCGACCTAGATGGGGTGAAGCCTCTAATTTTGAGAGATTGTAGTGTAGCTGGATGGCTCCTCGGGAACCCAATGTGTGACGAATTCATCAATGTACCGGAATGGTCTTACATAGTGGAGAAGGCCAATCCAGCCAATGACCTCTGTTACCCAGGTGATTTCAACGATTATGAAGAACTGAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCCCCAAAAGTTCTTGGTCCAACCATGAATCCTCATCAGGGGTGAGCTCAGCATGTCCATACCTGGGAAAGCCCTCCTTTTTCAGAAATGTGGTATGGCTTATCAAAAAGAACAATGCATACCCAACAATAAAGAAGAGCTACAATAATACCAACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCGACAGAGCAGACAAAGCTCTATCAAAACCCAACCACTTATATTTCCGTTGGAACATCAACACTAAACCAGAGATTGGTACCAAAAATAGCTACCAGATCCAAAGTAAACGGGCAAAGTGGAAGGATGGAGTTCTTCTGGACAATTTTAAAACCGAATGATGCAATCAACTTCGAGAGTAATGGAAATTTCATTGCTCCAGAATATGCATACAAAATTGTCAAGAAAGGGGACTCAGCAATTATGAAAAGTGAATTGGAATATGGTAACTGCAACACCAAATGTCAAACTCCAATGGGGGCGATAAACTCTAGTATGCCATTCCACAACATACACCCTCTCACCATCGGGGAATGCCCCAAATATGTGAAATCAAACAGATTAGTCCTTGCGACTGGGCTCAGAAATAGCCCTCAAAGGGAGAGAAGAAGAAAGAAGAGAGGACTATTTGGAGCTATAGCAGGTTTTATAGAGGGAGGATGGCAGGGAATGGTAGATGGTTGGTATGGATACCACCATAGCAATGAGCAGGGGAGTGGATACGCTGCAGACAAAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCGATCATTGACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAATAACTTAGAAAGGAGAATAGAGAATTTAAACAAGAAGATGGAAGACGGATTCCTAGATGTCTGGACTTATAATGCTGAACTTCTGGTTCTCATGGAAAATGAGAGAACTCTAGACTTTCATGACTCAAATGTCAGGAACCTTTACGACAAGGTCCGACTACAGCTTAGGGATAATGCAAAAGAGCTGGGTAACGGTTGTTTCGAGTTCTATCACAAATGTGATGATGAATGCATGGAAAGTGTAAGAAACGGAACGTATGACTACCCGCAGTATTCAGAAGAAGCAAGGCTAAAAAGAGAGGAAATAAGTGGAGTAAAATTGGAATCAATAGGAACTTACCAAATACTGTCAATTTATTCAACAGTGGCAAGTTCCCTAGCGCTGGCAATCATGGTAGCTGGTCTATCTTTATGGATGTGCTCCAATGGTTCGTTACAATGCAGAATT
- 'GOOSE_SHANTOU_2216_2005' ATGGAGAAAATAGTGCTTCTTCTTGCAATAATCAGCCTTGTTAAAAGTGATCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACACAATAATGGAAAAGAACGTTACTGTTACACATGCCCAAGACATACTGGAAAAGACACACAATGGGAAGCTCTGCGACTTAGATGGGGTGAAGCCTCTAATTTTGAGAGACTGTAGTGTAGCTGGATGGCTCCTCGGGAACCCAATGTGTGACGAATTCATCAATGTACCGGAATGGTCTTACATAGTGGAGAAGGCCAGTCCAGCCAATGACCTCTGTTACCCAGGTGATTTCAACGATTATGAAGAACTGAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCCCCAAAAGTTCTTGGTCCAATCATGAAGCCTCATCAGGGGTGAGCTCAGCATGTCCATACCTGGGAAAGCCCTCCTTTTTCAGAAATGTGGTATGGCTTATCAAAAAGAACAGTGCATACCCAACAATAAAGAGGAGCTACAATAATACCAACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCGGCAGAGCAGACAAAGCTCTATCAAAACCCAATCACCTATATTTCCGTTGGAACATCAACACTAAACCAGAGATTGGTACCAAAAATAGCTACCAGATCCAAAGTAAACGGGCAAAGTGGAAGGATGGAGTTCTTCTGGACAATTTTAAAACCGAATGATTCAATCAACTTCGAGAGTAATGGAAATTTCATTGCTCCAGAATATGCATACAAAATTGTCAAGAAAGGGGACTCAGCAATTATGAAAAGCGAATTGGAATATGGTAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCGATAAACTCTAGTATGCCATTCCACAACATACACCCTCTCACCATCGGGGAATGCCCCAAATATGTGAAATCAAACAGATTAGTCCTTGCGACTGGGCTCAGAAATAGCCCTCAAAGAGAGAGAAGAAGAAAGAAGAGAGGACTATTTGGAGCTATAGCAGGTTTTATAGAGGGAGGATGGCAGGGAATGGTAGATGGTTGGTATGGATACCACCATAGCAATGAGCAGGGGAGTGGATACGCTGCAGACAAAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCGATCATTGACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAATAACTTAGAAAGGAGAATAGAGAATTTAAACAAGAAGATGGAAGACGGATTCCTAGATGTCTGGACTTATAATGCTGAACTTCTGGTTCTCATGGAAAATGAGAGAACTCTAGACTTTCATGACTCAAATGTCAAGAACCTTTACGACAAGGTCCGACTACAGCTTAGGGATAATGCAAAAGAGCTAGGTAACGGTTGTTTCGAGTTCTATCACAAATGTGATAATGAATGCATGGAAAGTGTAAGAAACGGAACGTATGACTACCCGCAATATTCAGAAGAAGCAAGGCTAAAAAGAGAGGAAATTAGTGGAGTAAAATTGGAATCAATAGGAACTTACCAAATACTGTCAATTTATTCAACAGTGGCAAGTTCCCTAGCGCTGGCAATCATGGTAGCTGGTCTATCTTTATGGATGTGCTCCAATGGTTCGTTACAATGCAGAATT
- 'PEREGRINEFALCON_HK_D0028_2004' ATGGAGAAAATAGTGCTTCTTCTTGCAATAGTCAGTCTTGTTAAAAGTGATCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACACAATAATGGAAAAGAATGTTACTGTTACACATGCCCAAGACATACTGGAAAAGACACACAATGGGAAGCTCTGTGACCTAGATGGGGTGAAGCCTCTAATTTTGAGAGATTGTAGTGTCGCTGGATGGCTCCTCGGGAACCCAATGTGTGACGAATTCATCAATGTACCGGAATGGTCTTACATAGTGGAGAAGGCCAGTCCAGCCAATGACCTCTGTTACCCAGGTGATTTCAACGATTATGAAGAACTGAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCCCCAAAAGTTCTTGGTCCAATCATGAAGCCTCATCAGGGGTGAGCTCAGCATGTCCATACCTGGGAAAGCCCTCCTTTTTCAGAAATGTGGTATGGCTTATCAAAAAGAACAGTGCATACCCAACAATAAAGAGGAGCTACAATAATACCAACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCGGCAGAGCAGACAAAGCTCTATCAAAACCCAACCACCTATGTTTCCGTTGGAACATCAACACTAAACCAGAGATTGGTACCAAAAATAGCCACCAGATCCAAAGTAAACGGGCAAAGTGGAAGGATGGAGTTCTTCTGGACAATTTTAAAACCGAATGATGCAATCAACTTCGAGAGTAATGGAAATTTCATTGCTCCAGAATATGCATACAAAATTGTCAAGAAAGGGGACTCAGCAATTATGAAAAGTGAATTGGAATATGGTAACTGCAATACCAAGTGTCAAACTCCAATGGGGGCGATAAACTCTAGTATGCCATTCCACAACATACACCCTCTCACCATCGGGGAATGCCCCAAATATGTGAAATCAAACAGATTAGTCCTTGCGACTGGGCTCAGAAATAGCCCTCAAAGAGAGAGAAGAAGAAAAAAGAGAGGACTATTTGGAGCTATAGCAGGTTTTATAGAGGGAGGATGGCAGGGAATGGTAGATGGTTGGTATGGATACCACCATAGCAATGAGCAGGGGAGTGGATACGCTGCAGACAAAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCGATCATTGACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAATAACTTAGAAAGGAGAATAGAGAATTTAAACAAGAAGATGGAAGACGGATTCCTAGATGTCTGGACTTATAATGCTGAACTTCTGGTTCTCATGGAAAATGAGAGAACTCTAGACTTTCATGACTCAAATGTCAAGAACCTTTACGACAAGGTCCGACTACAGCTTAGGGATAATGCAAAAGAGCTGGGTAACGGTTGTTTCGAGTTCTATCACAAATGTGATAATGAATGTATGGAAAGTGTAAGAAACGGAACGTATGACTACCCGCAGTATTCAGAAGAAGCAAGACTAAAAAGAGAGGAAATAAGTGGAGTAAAATTGGAATCAATAGGAACTTACCAAATACTGTCAATTTATTCAACAGTGGCGAGTTCCCTAGCGCTGGCAATCATGGTAGCTGGTCTATCTTTATGGATGTGCTCC------------------------
- 'CK_HK_WF157_2003' ATGGAGAAAATAGTGCTTCTTCTTGCAATAGTCAGTCTTGTTAAAAGTGATCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACACAATAATGGAAAAGAACGTTACTGTTACACATGCCCAAGACATACTGGAAAAGACCCACAACGGGAAGCTCTGCGACCTAGATGGAGTGAAGCCTCTAATTTTGAGAGATTGTAGTGTAGCTGGATGGCTCCTCGGGAACCCAATGTGTGACGAATTCATCAATGTACCGGAATGGTCTTACATAGTGGAGAAGGCCAGTCCATCCAATGACCTCTGTTACCCAGGGGATTTCAACAATTATGAAGAACTGAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCCCCAAAAGCTCTTGGTCCAATCATGAAGCCTCATCAGGGGTGAGCTCAGCATGTCCATACCTGGGAAAGCCCTCCTTTTTCAGAAATGTGGTATGGCTTATCAAAAAGAACAGTACATACCCAACAATAAAGAGGAGCTACAATAATACCAACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCGGCAGAGCAGATAAAGCTCTATCAAAACCCAACCACCTATATTTCCGTTGGAACATCAACACTAAACCAGAGATTGGTACCAAAAATAGCTACTAGATCCAAAGTAAACGGGCAAAGTGGAAGGATGGAGTTCTTCTGGACAATTTTAAAACCGAATGATGCAATCAACTTCGAGAGTAATGGAAATTTCATTGCTCCAGAATATGCATACAAAATTGTCAAGAAAGGGGACTCAGCAATTATGAAAAGTGAATTGGAATATGGTAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCGATAAACTCTAGTATGCCCTTCCACAACATACACCCTCTCACCATCGGGGAATGCCCCAAATATGTGAAATCAAACAGACTAGTCCTTGCGACTGGGCTCAGAAATAGCCCTCAAAGAGAGAGAAGAAGAAAAAAGAGAGGACTATTTGGAGCTATAGCGGGTTTTATAGAGGGAGGATGGCAGGGAATGGTAGATGGTTGGTATGGATACCACCATAGCAATGAGCAGGGGAGTGGATACGCTGCAGACAAAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCGATCATTGACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAATAACTTAGAAAGGAGAATAGAGAATTTAAACAAGAAGATGGAAGACGGATTCCTAGATGTCTGGACTTATAATGCTGAACTTCTAGTTCTCATGGAAAATGAGAGAACTCTAGACTTTCATGACTCAAATGTCAAGAACCTTTACGACAAGGTCCGACTACAGCTTAGGGATAATGCAAAAGAGCTGGGTAACGGTTGTTTCGAGTTCTATCACAAATGTGATAATGAATGTATGGAAAGTGTAAGAAACGGAACGTATGACTACTCGCAGTATTCAGAAGAAGCAAGACTAAAAAGAGAGGAAATAAGTGGAGTAAAATTGGAATCAATAGGAACTTACCAAATACTGTCAATTTATTCAACAGTGGCGAGTTCCCTAGCACTGGCAATCATGGTAGCTGGTCTATCTTTATGGATGTGCTCCAATGGTTCGTTACAATGT------
- 'HUMAN_VIETNAM_CL105_2005' ATGGAGAAAATAGTGCTTCTTTTTGCGATAGTCAGTCTTGTTAAAAGTGATCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACACAATAATGGAAAAGAACGTTACTGTTACACATGCCCAAGACATACTGGAAAAGACACACAACGGGAAGCTCTGCGATCTAGATGGAGTGAAGCCTCTAATTTTGAGAGATTGTAGTGTAGCTGGATGGCTACTCGGAAACCCAATGTGTGACGAATTCATCAATGTGCCGGAATGGTCTTACATAGTGGAGAAGGTCAATCCAGTCAATGACCTCTGTTACCCAGGGGTTTTCAATGACTATGAAGAATTGAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCCCCAAAAGTTCTTGGTCCAGTCATGAAGCCTCATTAGGGGTGAGCTCAGTATGTCCATACCAGGGAAAGTCCTCCTTTTTCAGAAATGTGGTATGGCTTATCAAAAAGAACAGTACATACCCAACAATAAAGAGGAGCTACAATAATACCAACCAAGAAGATCTTTTGGTAATATGGGGGATTCATCATCCTAATGATGCGGCAGAGCAGATAAAGCTCTATCAAAACCCAACCACCTATATTTCCGTTGGGACATCAACACTAAACCAGAGATTGGTACCAAGAATAGCTACTAGATCCAAAGTAAACGGGCAAAGTGGGAGGATGGAGTTCTTCTGGACAATTTTAAAACCGAATGATGCAATCAACTTCGAGAGTAATGGAAATTTCATTGCTCCAGAATATGCATACAAGATTGTCAAGAAAGGGGACTCAACAATTATGAAAAGTGAATTGGAATATGGTAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCGATAAACTCTAGTATGCCATTCCACAATATACACCCTCTCACCATCGGGGAATGCCCCAAATATGTGAAATCAAACAGATTAGTCCTTGCGACTGGGCTCAGAAATAGCCCTCAAAAAGAGAGAAGAAGAAAAAAGAGAGGATTATTTGGAGCTATAGCAGGTTTTATAGAGGGAGGATGGCAGGGAATGGTAGATGGTTGGTATGGGTACCACCATAGCAATGAGCAGGGGAGTGGGTACGCTGCAGACAAAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCGATCATTGACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAACAACTTAGAAAGGAGAATAGAGAATTTAAACAAGAAGATGGAAGACGGGTTCCTAGATGTCTGGACTTATAATGCTGAACTTCTGGTTCTCATGGAAAATGAGAGAACTCTAGACTTTCATGACTCAAATGTCAAGAACCTTTACGACAAGGTCCGACTACAGCTTAGGGATAATGCAAAGGAGCTGGGTAACGGTTGTTTCGAGTTCTATCATAAATGTGATAATGAATGTATGGAAAGTGTAAGAAACGGAACGTATGACTACCCGCAGTATTCAGAAGAAGCAAGATTAAAAAGAGAGGAAATAAGTGGAGTAAAATTGGAATCAATAGGAATTTACCAAATACTGTCAATTTATTCTACAGTGGCGAGTTCCCTAGCACTGGCAATCATGATAGCTGGTCTATCCTTATGGATGTGCTCCAATGGGTCGTTACAA---------
- 'DUCK_VIETNAM_376_2005' ATGGAGAAAATAGTGCTTCTTTTTGCGATAGTCAGTCTTGTTAAAAGTGATCAGATTTGCATTGGTTACCATGCAAACAACTCAACAGAGCAGGTTGACACAATAATGGAAAAGAACGTTACTGTTACACATGCCCAAGACATACTGGAAAAGACACACAACGGGAAGCTCTGCGATCTAGATGGAGTGAAGCCTCTAATTTTGAGAGATTGTAGTGTAGCTGGATGGCTCCTCGGAAACCCAATGTGTGACGAATTCATCAATGTGCCGGAATGGTCTTACATAGTGGAGAAGGCCAATCCAGTCAATGACCTCTGTTACCCAGGGGATTTCAATGACTATGAAGAATTGAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCCCCAAAAGTTCTTGGTCCAGTCATGAAGCCTCATTAGGAGTGAGCTCAGCATGTCCATACCAGGGAAATCCCTCCTTTTTCAGAAATGTGGTATGGCTTATCAAAAAGAACAGTACATACCCAACAATAAAGAGGAACTACAATAATACCAACCAAGAAGATCTTTTGGTAATGTGGGGGATTCACCATCCTAATGATGCGGCAGAGCAGACAAAGCTCTATCAAAACCCAACCACCTATATTTCCGTTGGGACATCAACACTAAACCAGAGATTGGTACCAAGAATAGCTACTAGATCCAAAATAAACGGGCAAAGTGGGAGGATAGAGTTCTTCTGGACAATTTTAAAACCGAATGATGCAATCAACTTCGAGAGTAATGGAAATTTCATTGCTCCAGAATATGCATACAAAATTGTCAAGAAAGGGGACTCAACAATTATGAAAAGTGAATTGGAATATGGTAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCGATAAACTCTAGTATGCCATTCCACAATATACATCCTCTCACCATCGGGGAGTGCCCCAAATATGTGAAATCAAACAGATTAGTCCTTGCGACTGGGCTCAGAAATAGCCCTCAAAGAGAGAGAAGAAGAAAAAAGAGAGGATTATTTGGAGCTATAGCAGGTTTTATAGAAGGAGGATGGCAAGGAATGGTAGATGGTTGGTATGGGTACCACCATAGCAATGAGCAGGGAAGTGGGTACGCTGCAGACAAAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCGATCATTGACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAACAACTTAGAAAGGAGAATAGAGAATTTAAACAAGAAGATGGAAGACGGGTTCCTAGATGTCTGGACTTATAATGCTGAACTTCTGGTTCTCATGGAAAATGAGAGAACTCTAGACTTTCATGACTCAAATGTCAAGAACCTTTACGACAAGGTCCGACTACAGCTTAGAGATAATGCAAAGGAGCTGGGTAACGGTTGTTTCGAGTTCTATCATAAATGTGATAATGAATGTATGGAAAGTGTAAGAAACGGAACGTATGACTACCCGCAGTATTCAGAAGAAGCAAGATTAAAAAGAGAGGAAATAAGTGGAGTAAAATTGGAATCAATAGGAATTTACCAAATACTGTCAATTTATTCTACTGTGGCGAGTTCCCTAGCACTGGCAATCATGGTAGCTGGTCTATCCTTATGGATGTGCTCCAATGGGTCGTTACAATGCAGA---
- 'VIETNAM_3062_2004' ATGGAGAAAATAGTGCTTCTTTTTGCAATAGTCAGTCTTGTTAAAAGTGATCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACACAATAATGGAAAAGAACGTTACTGTTACACATGCCCAAGACATACTGGAAAAGACACACAACGGGAAGCTCTGCGATCTAGATGGAGTGAAGCCTCTAATTTTGAGAGATTGTAGTGTAGCTGGATGGCTCCTCGGAAACCCAATGTGTGACGAATTCATCAATGTGCCGGAATGGTCTTACATAGTGGAGAAGGCCAATCCAGTCAATGACCTCTGTTACCCAGGGGATTTCAATGACTATGAAGAATTGAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCCCCAAAAGTTCTTGGTCCAGTCATGAAGCCTCATTAGGAGTGAGCTCAGCATGTCCATACCAGGGAAAGTCCTCCTTTTTCAGAAATGTGGTATGGCTTATCAAAAAGAACAGTACATACCCAACAATAAAGAGGAGCTACAATAATACCAACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCGGCAGAGCAGACAAAGCTCTATCAAAACCCAACCACCTATATTTCCGTTGGGACATCAACACTAAACCAGAGGTTGGTACCAAGAATAGCTACTAGATCCAAAGTAAACGGGCAAAGTGGAAGGATGGAGTTCTTCTGGACAATTTTAAAACCGAATGATGCAATCAACTTCGAGAGTAATGGAAATTTCATTGCTCCAGAATATGCATACAAAATTGTCAAGAAAGGGGACTCAACAATTATGAAAAGTGAATTGGAATATGGTAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCGATAAACTCTAGTATGCCATTCCACAATATACACCCTCTCACCATCGGGGAATGCCCCAAATATGTGAAATCAAACAGATTAGTCCTTGCGACTGGGCTCAGAAATAGCCCTCAAAGAGAGAGAAGAAGAAAAAAGAGAGGATTATTTGGAGCTATAGCAGGTTTTATAGAGGGAGGATGGCAGGGAATGGTAGATGGTTGGTATGGGTACCACCATAGCAATGAGCAGGGGAGTGGGTACGCTGCAGACAAAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCGATCATTGACAAAATGAACACTCAATTTGAGGCCGTTGGAAGGGAATTTAACAACTTAGAAAGGAGAATAGAGAATTTAAACAAGAAGATGGAAGACGGGTTCCTAGATGTCTGGACTTATAATGCTGAACTTCTGGTTCTCATGGAAAATGAGAGAACTCTAGACTTTCATGACTCAAATGTCAAGAACCTTTACGACAAGGTCCGACTACAGCTTAGGGATAATGCAAAGGAGCTGGGTAACGGTTGTTTCGAGTTCTATCATAAATGTGATAATGAATGTATGGAAAGTGTAAGAAACGGAACGTATGACTACCCGCAGTATTCAGAAGAAGCAAGACTAAAAAGAGAGGAAATAAGTGGAGTAAAATTGGAATCAATAGGAATTTACCAAATACTGTCAATTTATTCTACAGTGGCGAGTTCCCTAGCACTGGCAATCATGGTAGCTGGTCTATCCTTATGGATGTGCTCCAATGGGTCG---------------
- 'MALLARD_VIETNAM_16_2003' ATGGAGAAAATAGTGCTTCTTTTTGCAATAGTCAGTCTTGTTAAAAGTGATCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACACAATAATGGAAAAGAACGTTACTGTTACACATGCCCAAGACATACTGGAAAAGACACACAACGGGAAGCTCTGCGATCTAGATGGAGTGAAGCCTCTAATTTTGAGAGATTGTAGTGTAGCTGGATGGCTCCTCGGAAACCCAATGTGTGACGAATTCATCAATGTGCCGGAATGGTCTTACATAGTGGAGAAGGCCAATCCAGTCAATGACCTCTGTTACCCAGGGGATTTCAATGAATATGAAGAATTGAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCCCCAAAAGTTCTTGGTCCAGTCATGAAGCCTCATTAGGGGTGAGCTCAGCATGTCCATACCAGGGAAAGTCCTCCTTTTTCAGAAATGTGGTATGGCTTGTCAAAAAGAACAGTACATACCCAACAATAAAGAGGAGCTACAATAATACCAACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCGGCAGAGCAGACAAAGCTCTATCAAAATCCAACCACCTACATTTCCGTTGGGACATCAACACTAAACCAGAGATTGGTACCAAGAATAGCTACTAGATCCAAAGTAAACGGGCAAAGTGGAAGGATGGAGTTCTTCTGGACAATTTTAAAACCGAATGATGCAATCAACTTCGAGAGTAATGGAAATTTCATTGCTCCAGAATATGCATACAAAATTGTCAAGAAAGGGGACTCAACAATTATGAAAAGTGAATTGGAATATGGTAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCGATAAACTCTAGTATGCCATTCCACAATATACACCCCCTCACCATCGGGGAATGCCCCAAATATGTGAAATCAAACAGATTAGTCCTTGCGACTGGGCTCAGAAATAGCCCTCAAAGAGAGAGAAGAAGAAAAAAGAGAGGATTATTTGGAGCTATAGCAGGTTTTATAGAGGGAGGATGGCAAGGAATGGTAGATGGTTGGTATGGGTACCACCATAGCAATGAGCAGGGGAGTGGGTACGCTGCAGACAAAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCGATCATTGACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAACAACTTAGAAAGGAGAATAGAGAATTTAAACAAGAAGATGGAAGACGGGTTCCTAGATGTCTGGACTTATAATGCTGAACTTCTGGTTCTCATGGAAAATGAGAGAACTCTAGACTTTCATGACTCAAATGTCAAGAACCTTTACGACAAGGTCCGACTACAGCTTAGGGATAATGCAAAGGAGCTGGGTAACGGTTGTTTCGAGTTCTATCATAAATGTGATAATGAATGTATGGAAAGTGTAAGAAACGGAACGTATGACTACCCGCAGTATTCAGAAGAAGCAAGACTAAAAAGAGAGGAAATAAGTGGAGTAAAATTGGAATCAATAGGAATTTACCAAATACTGTCAATTTATTCTACAGTGGCGAGTTCCCTAGCACTGGCAATCATGGTAGCTGGTCTATCCTTATGGATGTGCTCCAATGGGTCGTTACAATGCAGA---
- 'CHICKEN_THAILAND_KANCHANABURI_CK_160_2005' ATGGAGAAAATAGTGCTTCTTTTTGCAATAGTCAGTCTTGTTAAAAGTGATCAGATTTGCATTGGTTACCATGCAAACAACTCAACAGAGCAGGTTGACACAATAATGGAAAAGAACGTTACTGTTACACATGCCCAAGACATACTGGAAAAGACACACAACGGGAAGCTCTGTGATCTAGATGGAGTGAAGCCTCTAATTTTGAGAGATTGTAGTGTAGCTGGATGGCTCCTTGGAAACCCAATGTGTGATGAATTCATCAATGTGCCGGAATGGTCTTACATAGTGGAGAAGGCCAATCCAGCCAATGACCTCTGTTACCCAGGGGATTTCAATGACTATGAAGAATTGAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCCCCAAAAGTTCTTGGTCCAGTCATGAAGCCTCATTAGGAGTGAGCTCAGCATGTCCATATCAGGGAAAGTCCTCCTTTTTCAGAAATGTGGTATGGCTTATCAAAAAGAACAGTACATACCCAACAATAAAGAGGAGCTACAATAATACCAACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCGGCAGAGCAGACAAAGCTCTATCAAAACCCAACCACCTACATTTCCGTTGGGACATCAACACTAAACCAGAGATTGGTACCAAGAATAGCTACTAGATCCAAAGTAAACGGGCAAAGTGGAAGGATGGAGTTCTTCTGGACAATTTTAAAACCGAATGATGCAATCAACTTCGAGAGTAATGGAAATTTCATTGCTCCAGAATATGCATACAAAATTGTCAAGAAAGGGGACTCAACAATTATGAAAAGTGAATTGGAATATGGTAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCGATAAACTCTAGTATGCCATTCCACAATATACACCCTCTCACCATCGGGGAATGCCCCAAATATGTGAAATCAAACAGATTAGTCCTTGCGACTGGACTCAGAAATAGCCCTCAAAGAGAGAAAAGAAGAAAAAAGAGAGGATTATTTGGAGCTATAGCAGGTTTTATAGAGGGAGGATGGCAGGGAATGGTAGATGGTTGGTATGGGTACCACCATAGCAATGAGCAGGGGAGTGGGTACGCTGCAGACAAAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCGATCATTGACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAACAACTTAGAAAGGAGAATAGAGAATTTAAACAAGAAGATGGAAGACGGGTTCCTAGATGTCTGGACTTATAATGCTGAACTTCTGGTTCTCATGGAAAATGAGAGAACTCTAGACTTTCATGACTCAAATGTCAAGAACCTTTACGACAAGGTCCGACTACAGCTTAGGGATAATGCAAAGGAGCTGGGTAACGGTTGTTTCGAGTTCTATCATAAATGTGATAATGAATGTATGGAAAGTGTAAGGAACGGAACGTATGACTACCCGCAGTATTCAGAAGAAGCAAGACTAAAAAGAGAGGAAATAAGTGGAGTAAAATTGGAATCAATAGGAATTTACCAAATACTGTCAATTTATTCTACAGTAGCGAGTTCCCTAGCACTGGCAATCATGGTAGCTGGTCTATCCTTATGGATGTGCTTCAATGGGTCGTTACAATGCAGAATT
- 'DUCK_VIETNAM_272_2005' ATGGAGAAAATAGTGCTTCTTTTTGCAATAGTCAGTCTTGTTAAAAGTGATCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACACAATAATGGAAAAGAACGTTACTGTTACACATGCCCAAGACATACTGGAAAAGACACACAACGGGAAGCTCTGCGATCTAGATGGAGTGAAGCCTCTAATTTTGAGAGATTGTAGTGTAGCTGGATGGCTCCTTGGAAATCCAATGTGTGACGAATTCATCAATGTGCCGGAATGGTCTTACATAGTGGAGAAGGCCAATCCAGTCAATGACCTCTGTTACCCAGGGGATTTCAATGACTATGAAGAATTGAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCCCCAAAAGTTCTTGGCCCAGTCATGAAGCCTCATTAGGGGTGAGCTCAGCATGTCCATACCAGGGAAGGTCCTCCTTTTTCAGAAATGTGGTATGGCTTATCAAAAAGAACAGTACATATCCAACAATAAAGAGGAGCTACAATAATACCAACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCGGCAGAGCAGACAAAGCTCTATCAAAACCCAACCACCTATATTTCCGTTGGGACATCAACACTAAACCAGAGATTGATACCAAGAATAGCTACTAGATCCAAAGTAAACGGGCAAAGTGGAAGGATGGAGTTCTTCTGGACAATTTTAAAACCGAATGATGCAATCAATTTCGAGAGTAATGGAAATTTCATTGCCCCAGAATACGCATACAAAATTGTCAAGAAAGGGGACTCAACAATTATGAAAAGTGAATTGGAATATGGTAACTGCAACACCAAGTGTCAAACACCAATGGGGGCGATAAATTCTAGTATGCCATTCCACAATATACACCCTCTCACCATCGGGGAATGCCCCAAATATGTGAAATCAAACAGATTAGTCCTTGCGACTGGGCTCAGAAATAGCCCTCAAAGAGAGAGAAGA---AAAAAGAGAGGATTATTTGGAGCTATAGCAGGTTTTATAGAGGGGGGATGGCAGGGAATGGTAGATGGTTGGTATGGGTACCACCATAGCAATGAACAGGGGAGTGGGTACGCTGCAGACAAAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCGATCATTGACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAACAACTTAGAAAGGAGAATAGAGAATTTAAACAAGAAGATGGAAGACGGGTTCCTAGATGTCTGGACTTATAATGCTGAACTTCTGGTTCTCATGGAAAATGAGAGAACTCTAGACTTTCATGACTCAAATGTCAAGAACCTTTACGACAAGGTCCGACTACAGCTTAGGGATAATGCAAAGGAGCTGGGTAACGGTTGTTTCGAGTTCTATCATAAATGTGATAATGAATGTATGGAAAGTGTAAGAAATGGAACGTATGACTACCCGCAGTATTCAGAAGAAGCAAAACTAAAAAGAGAGGAAATAAGTGGAGTAAAATTGGAATCAATAGGAATTTACCAAATACTGTCAATTTATTCCACAGTAGCGAGTTCCCTAGCACTGGCAATCATGGTAGCTGGTCTATCCTTATGGATGTGCTCCAATGGGTCGTTACAATGCAGA---;
-END;
-
-BEGIN ASSUMPTIONS;
- CHARSET span_1 = 1-697;
- CHARSET span_2 = 698-1167;
- CHARSET span_3 = 1168-1698;
-END;
-BEGIN TREES;
- TREE tree_1 = ((((((((TREESPARROW_HENAN_1_2004:0.0145769244137292,TREESPARROW_HENAN_2_2004:1e-10)Node7:0.005925131124384257,CHICKEN_HEBEI_326_2005:0.03148335967389677)Node6:0.006520820816328921,((DUCK_GUANGZHOU_20_2005:0.009483822383439561,(GOOSE_SHANTOU_2216_2005:0.007374093130581441,PEREGRINEFALCON_HK_D0028_2004:0.007242107381463219)Node14:0.0007056004954733679)Node12:0.00710363602212726,CK_HK_WF157_2003:0.00757594740908166)Node11:0.004227199989057285)Node5:0.001170889307235767,TREESPARROW_HENAN_3_2004:0.008919169512223372)Node4:0.0008380584919822353,(TREESPARROW_HENAN_4_2004:0.006708184198226799,((CHICKEN_HONGKONG_915_97:1e-10,(HONGKONG_97_98:0.006483231977175029,HONGKONG_538_97:1e-10)Node24:0.0003031375872603963)Node22:0.0001037022453470389,(GOOSE_HONGKONG_W355_97:1e-10,DUCK_HONGKONG_Y283_97:1e-10)Node27:0.002891685438446985)Node21:0.02744187404194088)Node19:0.002944759819938243)Node3:0.001672904530995233,SWINE_ANHUI_2004:0.01260983958335299)Node2:0.01303612329048956,DUCK_VIETNAM_272_2005:0.008088746451854261)Node1:0.0006545914783555439,((HUMAN_VIETNAM_CL105_2005:0.01105269263722943,DUCK_VIETNAM_376_2005:0.006417734235732284)Node33:0.002021990910251294,VIETNAM_3062_2004:0.002304874937323682)Node32:0.0006817702832121299,(MALLARD_VIETNAM_16_2003:0.005709114871229771,CHICKEN_THAILAND_KANCHANABURI_CK_160_2005:0.008864540916547606)Node37:9.336374870077841e-05);
- TREE tree_2 = ((((((TREESPARROW_HENAN_1_2004:0.002586740118529802,TREESPARROW_HENAN_3_2004:0.003828953390398881)Node5:0.00187457851284572,TREESPARROW_HENAN_4_2004:0.0002656521581222459)Node4:0.008299727091877812,((CHICKEN_HEBEI_326_2005:0.01484958179784225,(SWINE_ANHUI_2004:1e-10,TREESPARROW_HENAN_2_2004:0.002239639293515125)Node12:0.01361271232984685)Node10:0.01278549184522065,((CHICKEN_HONGKONG_915_97:1e-10,GOOSE_HONGKONG_W355_97:1e-10)Node16:0.001326679361120118,((DUCK_HONGKONG_Y283_97:0.0006676977779578139,HONGKONG_538_97:1e-10)Node20:0.0006271503105586317,HONGKONG_97_98:0.004109899012531796)Node19:0.001653355437332724)Node15:0.01224714418221361)Node9:0.003429034672045344)Node3:0.005031763140085913,(((DUCK_GUANGZHOU_20_2005:0.004262245747717084,GOOSE_SHANTOU_2216_2005:0.004308213533754201)Node26:0.002157320455556664,CK_HK_WF157_2003:0.00647028357035998)Node25:4.000752717957338e-05,PEREGRINEFALCON_HK_D0028_2004:0.002090471815463569)Node24:0.003260422306103818)Node2:0.00707214212698231,DUCK_VIETNAM_272_2005:0.01454290899825338)Node1:0.0007147389821184919,(((HUMAN_VIETNAM_CL105_2005:0.004710041013757377,DUCK_VIETNAM_376_2005:0.01496207542884359)Node34:0.001166828623060772,MALLARD_VIETNAM_16_2003:0.003061545152147631)Node33:0.001134022328667363,VIETNAM_3062_2004:1e-10)Node32:0.0002767006572468676,CHICKEN_THAILAND_KANCHANABURI_CK_160_2005:0.00405819047265216);
- TREE tree_3 = (TREESPARROW_HENAN_1_2004:1.793736422068138e-05,((TREESPARROW_HENAN_3_2004:0.005512611253559831,TREESPARROW_HENAN_4_2004:0.000171467489882283)Node3:0.001655366533442949,(CHICKEN_HEBEI_326_2005:0.005483900345571787,(SWINE_ANHUI_2004:0.006320038544899231,(((CHICKEN_HONGKONG_915_97:1e-10,HONGKONG_97_98:1e-10)Node12:0.001309621960005619,(GOOSE_HONGKONG_W355_97:1e-10,HONGKONG_538_97:1e-10)Node15:0.0005799496924062597)Node11:0.01406566295495963,((DUCK_HONGKONG_Y283_97:999.9836725287659,(((HUMAN_VIETNAM_CL105_2005:0.002027831968935447,DUCK_VIETNAM_376_2005:0.003754856650868615)Node23:0.00177604858958343,(VIETNAM_3062_2004:0.002068037509299944,MALLARD_VIETNAM_16_2003:1e-10)Node26:0.0001623690336813484)Node22:0.0008290773242978894,(CHICKEN_THAILAND_KANCHANABURI_CK_160_2005:0.004523465945045592,DUCK_VIETNAM_272_2005:0.005056282226890766)Node29:0.001128740164377167)Node21:0.01150309854222087)Node19:0.001994389759866116,(((DUCK_GUANGZHOU_20_2005:0.003847909099661096,GOOSE_SHANTOU_2216_2005:0.005686200296849465)Node34:0.006130725555048717,PEREGRINEFALCON_HK_D0028_2004:8.387427766777967e-05)Node33:0.0009906361822363255,CK_HK_WF157_2003:0.005714641337818262)Node32:0.004952071733007253)Node18:0.002028752021615747)Node10:0.004186888950236505)Node8:0.002350770416932014)Node6:0.002154523112988181)Node2:0.0002651492563879275,TREESPARROW_HENAN_2_2004:0.007562549920247083);
-END;
diff -r bece0bad8e89 -r 3285fd1f4bde test-data/meme-in1.fa
--- a/test-data/meme-in1.fa Mon Feb 17 14:52:11 2020 -0500
+++ b/test-data/meme-in1.fa Thu Feb 20 18:10:47 2020 -0500
@@ -1,1 +1,1 @@
->HUMAN_VIETNAM_CL105_2005
ATGGAGAAAATAGTGCTTCTTTTTGCGATAGTCAGTCTTGTTAAAAGTGA
TCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACA
CAATAATGGAAAAGAACGTTACTGTTACACATGCCCAAGACATACTGGAA
AAGACACACAACGGGAAGCTCTGCGATCTAGATGGAGTGAAGCCTCTAAT
TTTGAGAGATTGTAGTGTAGCTGGATGGCTACTCGGAAACCCAATGTGTG
ACGAATTCATCAATGTGCCGGAATGGTCTTACATAGTGGAGAAGGTCAAT
CCAGTCAATGACCTCTGTTACCCAGGGGTTTTCAATGACTATGAAGAATT
GAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCC
CCAAAAGTTCTTGGTCCAGTCATGAAGCCTCATTAGGGGTGAGCTCAGTA
TGTCCATACCAGGGAAAGTCCTCCTTTTTCAGAAATGTGGTATGGCTTAT
CAAAAAGAACAGTACATACCCAACAATAAAGAGGAGCTACAATAATACCA
ACCAAGAAGATCTTTTGGTAATATGGGGGATTCATCATCCTAATGATGCG
GCAGAGCAGATAAAGCTCTATCAAAACCCAACCACCTATATTTCCGTTGG
GACATCAACACTAAACCAGAGATTGGTACCAAGAATAGCTACTAGATCCA
AAGTAAACGGGCAAAGTGGGAGGATGGAGTTCTTCTGGACAATTTTAAAA
CCGAATGATGCAATCAACTTCGAGAGTAATGGAAATTTCATTGCTCCAGA
ATATGCATACAAGATTGTCAAGAAAGGGGACTCAACAATTATGAAAAGTG
AATTGGAATATGGTAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCG
ATAAACTCTAGTATGCCATTCCACAATATACACCCTCTCACCATCGGGGA
ATGCCCCAAATATGTGAAATCAAACAGATTAGTCCTTGCGACTGGGCTCA
GAAATAGCCCTCAAAAAGAGAGAAGAAGAAAAAAGAGAGGATTATTTGGA
GCTATAGCAGGTTTTATAGAGGGAGGATGGCAGGGAATGGTAGATGGTTG
GTATGGGTACCACCATAGCAATGAGCAGGGGAGTGGGTACGCTGCAGACA
AAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCG
ATCATTGACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAA
CAACTTAGAAAGGAGAATAGAGAATTTAAACAAGAAGATGGAAGACGGGT
TCCTAGATGTCTGGACTTATAATGCTGAACTTCTGGTTCTCATGGAAAAT
GAGAGAACTCTAGACTTTCATGACTCAAATGTCAAGAACCTTTACGACAA
GGTCCGACTACAGCTTAGGGATAATGCAAAGGAGCTGGGTAACGGTTGTT
TCGAGTTCTATCATAAATGTGATAATGAATGTATGGAAAGTGTAAGAAAC
GGAACGTATGACTACCCGCAGTATTCAGAAGAAGCAAGATTAAAAAGAGA
GGAAATAAGTGGAGTAAAATTGGAATCAATAGGAATTTACCAAATACTGT
CAATTTATTCTACAGTGGCGAGTTCCCTAGCACTGGCAATCATGATAGCT
GGTCTATCCTTATGGATGTGCTCCAATGGGTCGTTACAA---------
>CHICKEN_HEBEI_326_2005
ATGGAGAGAATAGTGCTTCTTCTTGCAATAATCGGTCTTGTTAAAAGTGA
TCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACA
CAATAATGGAAAAGAACGTTACTGTTACACATGCTCAAGACATACTGGAG
AAGACACACAACGGGAAGCTCTGCAACCCAGATGGAGTGAAGCCTCTAAT
TTTGAAAGATTGTAGTGTAGCTGGATGGCTCCTCGGAAACCCAATGTGTG
ACGAATTTATCAATGTGCCGGAATGGTCTTACATAGTGGAGAAGGCCAGT
CCAGCCAATGGCCTCTGTTACCCAGGGGATTTCAATGACTATGAAGAACT
GAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCC
CCAAAAGTTCTTGGTCCGATCATGGAGCCTCATCAGGGGTGAGCTCAGCA
TGTTCCTATCTGGGGAAGCCCTCCTTTTTCAGAAATGTGGTATGGCTTAT
CAAAAAGAATAATACATACCCACCAATAAAGGTGAGCTACAACAATACCA
ACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCCAATGATGAG
GCAGAGCAGATAAAGATCTATCAAAACCCAACCACCTATATTTCCGTTGG
AACATCAACACTAAACCAGAGATTGGTACCAAAAATAGCTACTAGATCCA
AAGTAAACGGGCAAAGTGGAAGAATGGAGTTCTTCTGGACAATTTTAAAG
CCGAATGATGCTATCAATTTCGATAGTAATGGAAATTTCATTGCTCCAGA
ATATGCATACAAAATTGTCAAGAAAGGGGACTCAGCGATTATGAAAAGTG
AATTGGAATATGGCAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCG
ATAAATTCTAGTATGCCATTCCACAACATACACCCTCTCACCGTCGGGGA
ATGCCCCAAATATGTGAAATCAAACAGATTAGTCCTCGCGACTGGACTCA
GAAATGCCCCTCAAAGAGAGGGAGGAAGAAAAAAGAGAGGACTATTTGGA
GCCATAGCAGGGTTTATAGAGGGAGGATGGCAGGGAATGGTAGATGGTTG
GTATGGGTACCACCATAGCAATGAGCAGGGGAGTGGATACGCTGCAGACA
AAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCG
ATCATTGACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAA
TAACTTAGAAAGGAGAATAGAAAATTTAAACAAGAAGATGGAGGACGGAT
TCCTAGATGTCTGGACTTATAACGCTGAACTTCTGGTTCTCATGGAAAAT
GAGAGAACTCTAGACTTTCATGACTCAAATGTCAAGAACCTTTACGAAAA
GGTCCGACTACAGCTTAGGGATAATGCAAAGGAGCTGGGTAACGGTTGTT
TCGAGTTCTATCACAAATGTGATAATGAATGTATGGAAAGTGTAAAAAAC
GGAACGTATGACTACCCGCAGTATTCAGAAGAAGCAAGACTAAACAGAGA
GGAAATAAGTGGAGTAAAATTGGAATCAATGGGAACTTACCAAATACTGT
CAATTTATTCAACAGTGGCGAGTTCCCTAGCATTGGCAATCATGGTAGCT
GGTCTATCTTTATGGATGTGCTCCAATGGATCGTTACAATGCAGAATT
>CHICKEN_HONGKONG_915_97
ATGGAGAAAATAGTGCTTCTTCTTGCAACAGTCAGTCTTGTTAAAAGTGA
TCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACA
CAATAATGGAAAAGAATGTTACTGTTACACATGCCCAAGACATACTGGAA
AGGACACACAACGGGAAGCTCTGCGATCTAAATGGAGTGAAACCTCTCAT
TTTGAGGGATTGTAGTGTAGCTGGATGGCTCCTCGGAAACCCTATGTGTG
ACGAATTCATCAATGTGCCGGAATGGTCTTACATAGTGGAGAAGGCCAGT
CCAGCCAATGACCTCTGTTATCCAGGGAATTTCAACGACTATGAAGAACT
GAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCC
CCAAAAGTTCTTGGTCCAATCATGATGCCTCATCAGGGGTGAGCTCAGCA
TGTCCATACCTTGGGAGGTCCTCCTTTTTCAGAAATGTGGTATGGCTTAT
CAAAAAGAACAGTGCATACCCAACAATAAAGAGGAGCTACAATAATACCA
ACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCG
GCAGAGCAGACAAAGCTCTATCAAAATCCAACCACCTACATTTCCGTTGG
AACATCAACACTGAACCAGAGATTGGTTCCAGAAATAGCTACTAGACCCA
AAGTAAACGGGCAAAGTGGAAGAATGGAGTTCTTCTGGACAATTTTAAAG
CCGAATGATGCCATCAATTTCGAGAGTAATGGAAATTTCATTGCCCCAGA
ATATGCATACAAAATTGTCAAGAAAGGGGACTCAACAATTATGAAAAGTG
AATTGGAATATGGTAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCG
ATAAACTCTAGTATGCCATTCCACAACATACACCCCCTCACCATCGGGGA
ATGCCCCAAATATGTGAAATCAAACAGATTAGTTCTTGCGACTGGACTCA
GAAATACCCCTCAAAGGGAGAGAAGAAGAAAAAAGAGAGGACTATTTGGA
GCTATAGCAGGTTTTATAGAGGGAGGATGGCAGGGCATGGTAGATGGTTG
GTATGGGTACCACCATAGCAATGAGCAGGGGAGTGGATACGCTGCAGACA
AAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCG
ATCATTAACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAA
TAACTTAGAAAGGAGAATAGAGAATTTAAACAAGAAAATGGAAGACGGAT
TCCTAGATGTCTGGACTTACAATGCTGAACTTCTGGTTCTCATGGAAAAT
GAGAGAACTCTCGACTTTCATGACTCAAATGTCAAGAACCTTTACGACAA
GGTCCGACTACAGCTTAGGGATAATGCAAAGGAACTGGGTAATGGTTGTT
TCGAATTCTATCACAAATGTGATAATGAATGTATGGAAAGTGTAAAAAAC
GGAACGTATGACTACCCGCAGTATTCAGAAGAAGCAAGACTAAACAGAGA
GGAAATAAGTGGAGTAAAATTGGAATCAATGGGAACTTACCAAATACTGT
CAATTTATTCAACAGTGGCGAGTTCCCTAGCACTGGCAATCATGGTAGCT
GGTCTATCTTTATGGATGTGCTCCAATGGATCGTTACAATGCAGAATT
>HUMAN_VIETNAM_3062_2004
ATGGAGAAAATAGTGCTTCTTTTTGCAATAGTCAGTCTTGTTAAAAGTGA
TCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACA
CAATAATGGAAAAGAACGTTACTGTTACACATGCCCAAGACATACTGGAA
AAGACACACAACGGGAAGCTCTGCGATCTAGATGGAGTGAAGCCTCTAAT
TTTGAGAGATTGTAGTGTAGCTGGATGGCTCCTCGGAAACCCAATGTGTG
ACGAATTCATCAATGTGCCGGAATGGTCTTACATAGTGGAGAAGGCCAAT
CCAGTCAATGACCTCTGTTACCCAGGGGATTTCAATGACTATGAAGAATT
GAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCC
CCAAAAGTTCTTGGTCCAGTCATGAAGCCTCATTAGGAGTGAGCTCAGCA
TGTCCATACCAGGGAAAGTCCTCCTTTTTCAGAAATGTGGTATGGCTTAT
CAAAAAGAACAGTACATACCCAACAATAAAGAGGAGCTACAATAATACCA
ACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCG
GCAGAGCAGACAAAGCTCTATCAAAACCCAACCACCTATATTTCCGTTGG
GACATCAACACTAAACCAGAGGTTGGTACCAAGAATAGCTACTAGATCCA
AAGTAAACGGGCAAAGTGGAAGGATGGAGTTCTTCTGGACAATTTTAAAA
CCGAATGATGCAATCAACTTCGAGAGTAATGGAAATTTCATTGCTCCAGA
ATATGCATACAAAATTGTCAAGAAAGGGGACTCAACAATTATGAAAAGTG
AATTGGAATATGGTAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCG
ATAAACTCTAGTATGCCATTCCACAATATACACCCTCTCACCATCGGGGA
ATGCCCCAAATATGTGAAATCAAACAGATTAGTCCTTGCGACTGGGCTCA
GAAATAGCCCTCAAAGAGAGAGAAGAAGAAAAAAGAGAGGATTATTTGGA
GCTATAGCAGGTTTTATAGAGGGAGGATGGCAGGGAATGGTAGATGGTTG
GTATGGGTACCACCATAGCAATGAGCAGGGGAGTGGGTACGCTGCAGACA
AAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCG
ATCATTGACAAAATGAACACTCAATTTGAGGCCGTTGGAAGGGAATTTAA
CAACTTAGAAAGGAGAATAGAGAATTTAAACAAGAAGATGGAAGACGGGT
TCCTAGATGTCTGGACTTATAATGCTGAACTTCTGGTTCTCATGGAAAAT
GAGAGAACTCTAGACTTTCATGACTCAAATGTCAAGAACCTTTACGACAA
GGTCCGACTACAGCTTAGGGATAATGCAAAGGAGCTGGGTAACGGTTGTT
TCGAGTTCTATCATAAATGTGATAATGAATGTATGGAAAGTGTAAGAAAC
GGAACGTATGACTACCCGCAGTATTCAGAAGAAGCAAGACTAAAAAGAGA
GGAAATAAGTGGAGTAAAATTGGAATCAATAGGAATTTACCAAATACTGT
CAATTTATTCTACAGTGGCGAGTTCCCTAGCACTGGCAATCATGGTAGCT
GGTCTATCCTTATGGATGTGCTCCAATGGGTCG---------------
>GOOSE_HONGKONG_W355_97
ATGGAGAAAATAGTGCTTCTTCTTGCAACAGTCAGTCTTGTTAAAAGTGA
TCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACA
CAATAATGGAAAAGAATGTTACTGTTACACATGCCCAAGACATACTGGAA
AGGACACACAACGGGAAGCTCTGCGATCTAAATGGAGTGAAACCTCTCAT
TTTGAGGGATTGTAGTGTAGCTGGATGGCTCCTCGGAAACCCTATGTGTG
ACGAATTCATCAATGTGCCGGAATGGTCTTACATAGTGGAGAAGGCCAGT
CCAGCCAATGACCTCTGTTATCCAGGGAATTTCAACGACTATGAAGAACT
GAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCC
CCAAAAGTTCTTGGTCCAATCATGATGCCTCATCAGGGGTTAGCTCAGCA
TGTCCATACCTTGGGAGGTCCTCCTTTTTCAGAAATGTGGTATGGCTTAT
CAAAAAGAACAGTGCATACCCAACAATAAAGAGGAGCTACAATAATACCA
ACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCG
GCAGAGCAGACAAAGCTTTATCAAAATCCAACCACCTACATTTCCGTTGG
AACATCAACACTGAACCAGAGATTGGTTCCAGAAATAGCTACTAGACCCA
AAGTAAACGGGCAAAGTGGAAGAATGGAGTTCTTCTGGACAATTTTAAAG
CCGAATGATGCCATCAATTTCGAGAGTAATGGAAATTTCATTGCCCCAGA
ATATGCATACAAAATTGTCAAGAAAGGGGACTCAACAATTATGAAAAGTG
AATTGGAATATGGTAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCG
ATAAACTCTAGTATGCCATTCCACAACATACACCCCCTCACCATCGGGGA
ATGCCCCAAATATGTGAAATCAAACAGATTAGTTCTTGCGACTGGACTCA
GAAATACCCCTCAAAGGGAGAGAAGAAGAAAAAAGAGAGGACTATTTGGA
GCTATAGCAGGTTTTATAGAGGGAGGATGGCAGGGCATGGTAGATGGTTG
GTATGGGTACCACCATAGCAATGAGCAGGGGAGTGGATACGCTGCAGACA
AAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCG
ATCATTAACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAA
TAACTTAGAAAGGAGAATAGAGAATTTAAACAAGAAAATGGAAGACGGAT
TCCTAGATGTCTGGACTTACAATGCTGAACTTCTGGTTCTCATGGAAAAT
GAGAGAACTCTCGACTTTCATGACTCAAATGTCAAGAACCTTTACGACAA
GGTCCGACTACAGCTTAGGGATAATGCAAAGGAACTGGGTAATGGTTGTT
TCGAATTCTATCACAAATGTGATAATGAATGTATGGAAAGTGTAAGAAAC
GGAACGTATGACTACCCGCAGTATTCAGAAGAAGCAAGACTAAACAGAGA
GGAAATAAGTGGAGTAAAATTGGAATCAATGGGAACTTACCAAATACTGT
CAATTTATTCAACAGTGGCGAGTTCCCTAGCACTGGCAATCATGGTAGCT
GGTCTATCTTTATGGATGTGCTCCAATGGATCGTTACAATGCAGAATT
>MALLARD_VIETNAM_16_2003
ATGGAGAAAATAGTGCTTCTTTTTGCAATAGTCAGTCTTGTTAAAAGTGA
TCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACA
CAATAATGGAAAAGAACGTTACTGTTACACATGCCCAAGACATACTGGAA
AAGACACACAACGGGAAGCTCTGCGATCTAGATGGAGTGAAGCCTCTAAT
TTTGAGAGATTGTAGTGTAGCTGGATGGCTCCTCGGAAACCCAATGTGTG
ACGAATTCATCAATGTGCCGGAATGGTCTTACATAGTGGAGAAGGCCAAT
CCAGTCAATGACCTCTGTTACCCAGGGGATTTCAATGAATATGAAGAATT
GAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCC
CCAAAAGTTCTTGGTCCAGTCATGAAGCCTCATTAGGGGTGAGCTCAGCA
TGTCCATACCAGGGAAAGTCCTCCTTTTTCAGAAATGTGGTATGGCTTGT
CAAAAAGAACAGTACATACCCAACAATAAAGAGGAGCTACAATAATACCA
ACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCG
GCAGAGCAGACAAAGCTCTATCAAAATCCAACCACCTACATTTCCGTTGG
GACATCAACACTAAACCAGAGATTGGTACCAAGAATAGCTACTAGATCCA
AAGTAAACGGGCAAAGTGGAAGGATGGAGTTCTTCTGGACAATTTTAAAA
CCGAATGATGCAATCAACTTCGAGAGTAATGGAAATTTCATTGCTCCAGA
ATATGCATACAAAATTGTCAAGAAAGGGGACTCAACAATTATGAAAAGTG
AATTGGAATATGGTAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCG
ATAAACTCTAGTATGCCATTCCACAATATACACCCCCTCACCATCGGGGA
ATGCCCCAAATATGTGAAATCAAACAGATTAGTCCTTGCGACTGGGCTCA
GAAATAGCCCTCAAAGAGAGAGAAGAAGAAAAAAGAGAGGATTATTTGGA
GCTATAGCAGGTTTTATAGAGGGAGGATGGCAAGGAATGGTAGATGGTTG
GTATGGGTACCACCATAGCAATGAGCAGGGGAGTGGGTACGCTGCAGACA
AAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCG
ATCATTGACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAA
CAACTTAGAAAGGAGAATAGAGAATTTAAACAAGAAGATGGAAGACGGGT
TCCTAGATGTCTGGACTTATAATGCTGAACTTCTGGTTCTCATGGAAAAT
GAGAGAACTCTAGACTTTCATGACTCAAATGTCAAGAACCTTTACGACAA
GGTCCGACTACAGCTTAGGGATAATGCAAAGGAGCTGGGTAACGGTTGTT
TCGAGTTCTATCATAAATGTGATAATGAATGTATGGAAAGTGTAAGAAAC
GGAACGTATGACTACCCGCAGTATTCAGAAGAAGCAAGACTAAAAAGAGA
GGAAATAAGTGGAGTAAAATTGGAATCAATAGGAATTTACCAAATACTGT
CAATTTATTCTACAGTGGCGAGTTCCCTAGCACTGGCAATCATGGTAGCT
GGTCTATCCTTATGGATGTGCTCCAATGGGTCGTTACAATGCAGA---
>CHICKEN_CK_160_2005
ATGGAGAAAATAGTGCTTCTTTTTGCAATAGTCAGTCTTGTTAAAAGTGA
TCAGATTTGCATTGGTTACCATGCAAACAACTCAACAGAGCAGGTTGACA
CAATAATGGAAAAGAACGTTACTGTTACACATGCCCAAGACATACTGGAA
AAGACACACAACGGGAAGCTCTGTGATCTAGATGGAGTGAAGCCTCTAAT
TTTGAGAGATTGTAGTGTAGCTGGATGGCTCCTTGGAAACCCAATGTGTG
ATGAATTCATCAATGTGCCGGAATGGTCTTACATAGTGGAGAAGGCCAAT
CCAGCCAATGACCTCTGTTACCCAGGGGATTTCAATGACTATGAAGAATT
GAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCC
CCAAAAGTTCTTGGTCCAGTCATGAAGCCTCATTAGGAGTGAGCTCAGCA
TGTCCATATCAGGGAAAGTCCTCCTTTTTCAGAAATGTGGTATGGCTTAT
CAAAAAGAACAGTACATACCCAACAATAAAGAGGAGCTACAATAATACCA
ACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCG
GCAGAGCAGACAAAGCTCTATCAAAACCCAACCACCTACATTTCCGTTGG
GACATCAACACTAAACCAGAGATTGGTACCAAGAATAGCTACTAGATCCA
AAGTAAACGGGCAAAGTGGAAGGATGGAGTTCTTCTGGACAATTTTAAAA
CCGAATGATGCAATCAACTTCGAGAGTAATGGAAATTTCATTGCTCCAGA
ATATGCATACAAAATTGTCAAGAAAGGGGACTCAACAATTATGAAAAGTG
AATTGGAATATGGTAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCG
ATAAACTCTAGTATGCCATTCCACAATATACACCCTCTCACCATCGGGGA
ATGCCCCAAATATGTGAAATCAAACAGATTAGTCCTTGCGACTGGACTCA
GAAATAGCCCTCAAAGAGAGAAAAGAAGAAAAAAGAGAGGATTATTTGGA
GCTATAGCAGGTTTTATAGAGGGAGGATGGCAGGGAATGGTAGATGGTTG
GTATGGGTACCACCATAGCAATGAGCAGGGGAGTGGGTACGCTGCAGACA
AAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCG
ATCATTGACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAA
CAACTTAGAAAGGAGAATAGAGAATTTAAACAAGAAGATGGAAGACGGGT
TCCTAGATGTCTGGACTTATAATGCTGAACTTCTGGTTCTCATGGAAAAT
GAGAGAACTCTAGACTTTCATGACTCAAATGTCAAGAACCTTTACGACAA
GGTCCGACTACAGCTTAGGGATAATGCAAAGGAGCTGGGTAACGGTTGTT
TCGAGTTCTATCATAAATGTGATAATGAATGTATGGAAAGTGTAAGGAAC
GGAACGTATGACTACCCGCAGTATTCAGAAGAAGCAAGACTAAAAAGAGA
GGAAATAAGTGGAGTAAAATTGGAATCAATAGGAATTTACCAAATACTGT
CAATTTATTCTACAGTAGCGAGTTCCCTAGCACTGGCAATCATGGTAGCT
GGTCTATCCTTATGGATGTGCTTCAATGGGTCGTTACAATGCAGAATT
>CK_HK_WF157_2003
ATGGAGAAAATAGTGCTTCTTCTTGCAATAGTCAGTCTTGTTAAAAGTGA
TCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACA
CAATAATGGAAAAGAACGTTACTGTTACACATGCCCAAGACATACTGGAA
AAGACCCACAACGGGAAGCTCTGCGACCTAGATGGAGTGAAGCCTCTAAT
TTTGAGAGATTGTAGTGTAGCTGGATGGCTCCTCGGGAACCCAATGTGTG
ACGAATTCATCAATGTACCGGAATGGTCTTACATAGTGGAGAAGGCCAGT
CCATCCAATGACCTCTGTTACCCAGGGGATTTCAACAATTATGAAGAACT
GAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCC
CCAAAAGCTCTTGGTCCAATCATGAAGCCTCATCAGGGGTGAGCTCAGCA
TGTCCATACCTGGGAAAGCCCTCCTTTTTCAGAAATGTGGTATGGCTTAT
CAAAAAGAACAGTACATACCCAACAATAAAGAGGAGCTACAATAATACCA
ACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCG
GCAGAGCAGATAAAGCTCTATCAAAACCCAACCACCTATATTTCCGTTGG
AACATCAACACTAAACCAGAGATTGGTACCAAAAATAGCTACTAGATCCA
AAGTAAACGGGCAAAGTGGAAGGATGGAGTTCTTCTGGACAATTTTAAAA
CCGAATGATGCAATCAACTTCGAGAGTAATGGAAATTTCATTGCTCCAGA
ATATGCATACAAAATTGTCAAGAAAGGGGACTCAGCAATTATGAAAAGTG
AATTGGAATATGGTAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCG
ATAAACTCTAGTATGCCCTTCCACAACATACACCCTCTCACCATCGGGGA
ATGCCCCAAATATGTGAAATCAAACAGACTAGTCCTTGCGACTGGGCTCA
GAAATAGCCCTCAAAGAGAGAGAAGAAGAAAAAAGAGAGGACTATTTGGA
GCTATAGCGGGTTTTATAGAGGGAGGATGGCAGGGAATGGTAGATGGTTG
GTATGGATACCACCATAGCAATGAGCAGGGGAGTGGATACGCTGCAGACA
AAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCG
ATCATTGACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAA
TAACTTAGAAAGGAGAATAGAGAATTTAAACAAGAAGATGGAAGACGGAT
TCCTAGATGTCTGGACTTATAATGCTGAACTTCTAGTTCTCATGGAAAAT
GAGAGAACTCTAGACTTTCATGACTCAAATGTCAAGAACCTTTACGACAA
GGTCCGACTACAGCTTAGGGATAATGCAAAAGAGCTGGGTAACGGTTGTT
TCGAGTTCTATCACAAATGTGATAATGAATGTATGGAAAGTGTAAGAAAC
GGAACGTATGACTACTCGCAGTATTCAGAAGAAGCAAGACTAAAAAGAGA
GGAAATAAGTGGAGTAAAATTGGAATCAATAGGAACTTACCAAATACTGT
CAATTTATTCAACAGTGGCGAGTTCCCTAGCACTGGCAATCATGGTAGCT
GGTCTATCTTTATGGATGTGCTCCAATGGTTCGTTACAATGT------
>SWINE_ANHUI_1_2004
ATGGAGAAAATAGTGCTTCTTCTTGCAATAGTCAGTCTTGTTAAAGGTGA
TCAGATTTGCACTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACA
CAATAATGGAAAAGAACGTTACTGTTACACATGCTCAAGACATACTGGAA
AAGACACACAACGGGAAGCTCTGCGACCTAGATGGAGTGAAGCCTCTAAT
TTTAAGAGATTGTAGTGTAGCTGGATGGCTCCTCGGGAACCCAATGTGTG
ACGAATTCATCAATGTGCCGGAATGGTCTTACATAGTGGAGAAGGCCAAT
CCAGCCAATGACCTCTGTTACCCAGGGGATTTCAACGACTATGAAGAACT
GAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCC
CCAAAAGTTCTTGGTCCGATCATGAAGCCTCATCAGGGGTGAGCTCAGCA
TGTCCATACCAGGGAAGGTCCTCCTTTTTCAGAAATGTGGTATGGCTTAT
CAAAAAGAACAGTGCATACCCAACAATAAAGAGGAGCTACAATAATACCA
ACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCACCCTAATGATGCG
GCAGAGCAGATAAAGCTCTATCAAAACCCAACCACCTATATTTCCGTTGG
GACATCAACACTAAACCAGAGATTGGTACCAAAAATAGCTACTAGATCCA
AAGTAAACGGACAAAGTGGAAGAATGGAGTTCTTCTGGACAATTTTAAAA
CCGAATGATGCTATCAATTTCGAGAGTAATGGAAATTTCATTGCTCCAGA
ATATGCATACAAAATTGTCAAGAAAGGGGACTCTGCAATTATGAAAAGTG
AATTGGAATATGGCAACTGCAACACCAAGTGTCAAACTCCAGTGGGGGCG
ATAAATTCTAGCATGCCATTCCACAACATACACCCTCTCACCATCGGGGA
ATGCCCCAAATATGTGAAATCAAACAGATTAGTCCTTGCGACTGGACTCA
GAAATGCCCCTCAAAGAGAGGGAAGAAGAAAAAAGAGAGGACTATTTGGA
GCTATAGCAGGGTTTATAGAGGGAGGATGGCAGGGGATGGTAGATGGTTG
GTATGGGTACCACCATAGCAATGAGCAGGGGAGTGGATACGCTGCAGACA
AAGAATCCACTCAAAAAGCAATAGATGGAGTCACCAATAAGGTCAACTCG
ATCATTGACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAA
TAACTTAGAAAGGAGAATAGAAAATTTAAACAAGAAGATGGAGGACGGAT
TCCTAGATGTCTGGACTTATAATGCTGAACTTCTGGTTCTCATGGAAAAT
GAGAGAACTCTAGACTTTCATGACTCAAATGTCAAGAACCTTTACGACAA
GGTCCGACTACAGCTTAGGGATAATGCAAAGGAGCTGGGTAACGGTTGTT
TCGAGTTCTATCACAGATGTGATAATGAATGTATGGAAAGTGTAAGAAAC
GGAACGTATGACTACCCGCAGTATTCGGAAGAAGCAAGACTAAACAGAGA
GGAAATAAGTGGAGTAAAATTGGAATCAATAGGAACTTACCAAATACTGT
CAATTTATTCAACAGTGGCGAGTTCCCTAGCACTGGCAATCATGGTGGCT
GGTCTATCTTTATGGATGTGCTCCAATGGATCGTTACAATGCAGAATT
>HONGKONG_1_97_98
------------------------------------------------GA
CCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGATA
CAATAATGGAAAAGAATGTTACTGTTACACATGCCCAAGACATACTGGAA
AGGACACACGACGGGAAGCTCTGCGATCTAAATGGAGTGAAACCTCTCAT
TTTGAGGGATTGTAGTGTAGCTGGATGGCTCCTCGGAAACCCTATGTGTG
ACGAATTCATCAATGTGCCGGAATGGTCTTACATAGTGGAGAAGGCCAGT
CCAGCCAATGACCTCTGTTATCCAGGGAATTTCAACGACTATGAAGAACT
GAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCC
CCAAAAGTTCTTGGTCCAATCATGATGCCTCATCAGGGGTGAGCTCAGCA
TGTCCATACCTTGGGAGGTCCTCCTTTTTCAGAAATGTGGTATGGCTTAT
CAAAAAGAACAGTGCATACCCAACAATAAAGAGGAGCTACAATAATACCA
ACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCG
GCAGAGCAGACAAAGCTCTATCAAAATCCAACCACCTACATTTCCGTTGG
AACATCAACACTGAATCAGAGATTGGTTCCAGAAATAGCTACTAGACCCA
AAGTAAACGGGCAAAGTGGAAGAATGGAGTTCTTCTGGACAATTTTAAAG
CCGAATGATGCCATCAATTTCGAGAGTAATGGAAATTTCATTGCCCCAGA
ATATGCATACAAAATTGTCAAGAAAGGGGACTCAACAATTATGAAAAGTG
AATTGGAATATGGTAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCG
ATAAACTCTAGTATGCCATTCCACAACATACACCCCCTCACCATCGGGGA
ATGCCCCAAATATGTGAAATCAAACAGATTAGTTCTTGCGACTGGACTCA
GAAATACCCCTCATAGGGAGAGAAGAAGAAAAAAGAGAGGACTATTTGGA
GCTATAGCAGGTTTTATAGAAGGAGGATGGCAGGGAATGGTAGATGGTTG
GTATGGGTACCACCATAGCAATGAGCAGGGGAGTGGATACGCTGCAGACC
AAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCG
ATCATTAACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAA
TAACTTAGAAAGGAGAATAGAGAATTTAAACAAGAAAATGGAAGACGGAT
TCCTAGATGTCTGGACTTACAATGCTGAACTTCTGGTTCTCATGGAAAAT
GAGAGAACTCTCGACTTTCATGACTCAAATGTCAAGAACCTTTACGACAA
GGTCCGACTACAGCTTAGGGATAATGCAAAGGAACTGGGTAATGGTTGTT
TCGAATTCTATCACAAATGTGATAATGAATGTATGGAAAGTGTAAAAAAC
GGAACGTATGACTACCCGCAGTATTCAGAAGAAGCAAGACTAAACAGAGA
GGAAATAAGTGGAGTAAAATTGGAATCAATGGGAACTTACCAAATACTGT
CAATTTATTCAACAGTGGCGAGTTCCCTAGCACTGGCAATCATGGTAGCT
GGTCTATCTTTATGGATGTGCTCCAATGGATCGTTACAATGCAGAATT
>GOOSE_SHANTOU_2216_2005
ATGGAGAAAATAGTGCTTCTTCTTGCAATAATCAGCCTTGTTAAAAGTGA
TCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACA
CAATAATGGAAAAGAACGTTACTGTTACACATGCCCAAGACATACTGGAA
AAGACACACAATGGGAAGCTCTGCGACTTAGATGGGGTGAAGCCTCTAAT
TTTGAGAGACTGTAGTGTAGCTGGATGGCTCCTCGGGAACCCAATGTGTG
ACGAATTCATCAATGTACCGGAATGGTCTTACATAGTGGAGAAGGCCAGT
CCAGCCAATGACCTCTGTTACCCAGGTGATTTCAACGATTATGAAGAACT
GAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCC
CCAAAAGTTCTTGGTCCAATCATGAAGCCTCATCAGGGGTGAGCTCAGCA
TGTCCATACCTGGGAAAGCCCTCCTTTTTCAGAAATGTGGTATGGCTTAT
CAAAAAGAACAGTGCATACCCAACAATAAAGAGGAGCTACAATAATACCA
ACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCG
GCAGAGCAGACAAAGCTCTATCAAAACCCAATCACCTATATTTCCGTTGG
AACATCAACACTAAACCAGAGATTGGTACCAAAAATAGCTACCAGATCCA
AAGTAAACGGGCAAAGTGGAAGGATGGAGTTCTTCTGGACAATTTTAAAA
CCGAATGATTCAATCAACTTCGAGAGTAATGGAAATTTCATTGCTCCAGA
ATATGCATACAAAATTGTCAAGAAAGGGGACTCAGCAATTATGAAAAGCG
AATTGGAATATGGTAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCG
ATAAACTCTAGTATGCCATTCCACAACATACACCCTCTCACCATCGGGGA
ATGCCCCAAATATGTGAAATCAAACAGATTAGTCCTTGCGACTGGGCTCA
GAAATAGCCCTCAAAGAGAGAGAAGAAGAAAGAAGAGAGGACTATTTGGA
GCTATAGCAGGTTTTATAGAGGGAGGATGGCAGGGAATGGTAGATGGTTG
GTATGGATACCACCATAGCAATGAGCAGGGGAGTGGATACGCTGCAGACA
AAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCG
ATCATTGACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAA
TAACTTAGAAAGGAGAATAGAGAATTTAAACAAGAAGATGGAAGACGGAT
TCCTAGATGTCTGGACTTATAATGCTGAACTTCTGGTTCTCATGGAAAAT
GAGAGAACTCTAGACTTTCATGACTCAAATGTCAAGAACCTTTACGACAA
GGTCCGACTACAGCTTAGGGATAATGCAAAAGAGCTAGGTAACGGTTGTT
TCGAGTTCTATCACAAATGTGATAATGAATGCATGGAAAGTGTAAGAAAC
GGAACGTATGACTACCCGCAATATTCAGAAGAAGCAAGGCTAAAAAGAGA
GGAAATTAGTGGAGTAAAATTGGAATCAATAGGAACTTACCAAATACTGT
CAATTTATTCAACAGTGGCAAGTTCCCTAGCGCTGGCAATCATGGTAGCT
GGTCTATCTTTATGGATGTGCTCCAATGGTTCGTTACAATGCAGAATT
>PEREGRINEFALCON_HK_D0028_2004
ATGGAGAAAATAGTGCTTCTTCTTGCAATAGTCAGTCTTGTTAAAAGTGA
TCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACA
CAATAATGGAAAAGAATGTTACTGTTACACATGCCCAAGACATACTGGAA
AAGACACACAATGGGAAGCTCTGTGACCTAGATGGGGTGAAGCCTCTAAT
TTTGAGAGATTGTAGTGTCGCTGGATGGCTCCTCGGGAACCCAATGTGTG
ACGAATTCATCAATGTACCGGAATGGTCTTACATAGTGGAGAAGGCCAGT
CCAGCCAATGACCTCTGTTACCCAGGTGATTTCAACGATTATGAAGAACT
GAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCC
CCAAAAGTTCTTGGTCCAATCATGAAGCCTCATCAGGGGTGAGCTCAGCA
TGTCCATACCTGGGAAAGCCCTCCTTTTTCAGAAATGTGGTATGGCTTAT
CAAAAAGAACAGTGCATACCCAACAATAAAGAGGAGCTACAATAATACCA
ACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCG
GCAGAGCAGACAAAGCTCTATCAAAACCCAACCACCTATGTTTCCGTTGG
AACATCAACACTAAACCAGAGATTGGTACCAAAAATAGCCACCAGATCCA
AAGTAAACGGGCAAAGTGGAAGGATGGAGTTCTTCTGGACAATTTTAAAA
CCGAATGATGCAATCAACTTCGAGAGTAATGGAAATTTCATTGCTCCAGA
ATATGCATACAAAATTGTCAAGAAAGGGGACTCAGCAATTATGAAAAGTG
AATTGGAATATGGTAACTGCAATACCAAGTGTCAAACTCCAATGGGGGCG
ATAAACTCTAGTATGCCATTCCACAACATACACCCTCTCACCATCGGGGA
ATGCCCCAAATATGTGAAATCAAACAGATTAGTCCTTGCGACTGGGCTCA
GAAATAGCCCTCAAAGAGAGAGAAGAAGAAAAAAGAGAGGACTATTTGGA
GCTATAGCAGGTTTTATAGAGGGAGGATGGCAGGGAATGGTAGATGGTTG
GTATGGATACCACCATAGCAATGAGCAGGGGAGTGGATACGCTGCAGACA
AAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCG
ATCATTGACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAA
TAACTTAGAAAGGAGAATAGAGAATTTAAACAAGAAGATGGAAGACGGAT
TCCTAGATGTCTGGACTTATAATGCTGAACTTCTGGTTCTCATGGAAAAT
GAGAGAACTCTAGACTTTCATGACTCAAATGTCAAGAACCTTTACGACAA
GGTCCGACTACAGCTTAGGGATAATGCAAAAGAGCTGGGTAACGGTTGTT
TCGAGTTCTATCACAAATGTGATAATGAATGTATGGAAAGTGTAAGAAAC
GGAACGTATGACTACCCGCAGTATTCAGAAGAAGCAAGACTAAAAAGAGA
GGAAATAAGTGGAGTAAAATTGGAATCAATAGGAACTTACCAAATACTGT
CAATTTATTCAACAGTGGCGAGTTCCCTAGCGCTGGCAATCATGGTAGCT
GGTCTATCTTTATGGATGTGCTCC------------------------
>HONGKONG_1_538_97
------------------------------------------------GA
TCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACA
CAATAATGGAAAAGAATGTTACTGTTACACATGCCCAAGACATACTGGAA
AGGACACACAACGGGAAGCTCTGCGATCTAAATGGAGTGAAACCTCTCAT
TTTGAGGGATTGTAGTGTAGCTGGATGGCTCCTCGGAAACCCTATGTGTG
ACGAATTCATCAATGTGCCGGAATGGTCTTACATAGTGGAGAAGGCCAGT
CCAGCCAATGACCTCTGTTATCCAGGGAATTTCAACGACTATGAAGAACT
GAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCC
CCAAAAGTTCTTGGTCCAATCATGATGCCTCATCAGGGGTGAGCTCAGCA
TGTCCATACCTTGGGAGGTCCTCCTTTTTCAGAAATGTGGTATGGCTTAT
CAAAAAGAACAGTGCATACCCAACAATAAAGAGGAGCTACAATAATACCA
ACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCG
GCAGAGCAGACAAAGCTCTATCAAAATCCAACCACCTACATTTCCGTTGG
AACATCAACACTGAACCAGAGATTGGTTCCAGAAATAGCTACTAGACCCA
AAGTAAACGGGCAAAGTGGAAGAATGGAGTTCTTCTGGACAATTTTAAAG
CCGAATGATGCCATCAATTTCGAGAGTAATGGAAATTTCATTGCCCCAGA
ATATGCATACAAAATTGTCAAGAAAGGGGACTCAACAATTATGAAAAGTG
AATTGGAATATGGTAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCG
ATAAACTCTAGTATGCCATTCCACAACATACACCCCCTCACCATCGGGGA
ATGCCCCAAATATGTGAAATCAAACAGATTAGTTCTTGCGACTGGACTCA
GAAATACCCCTCAAAGGGAGAGAAGAAGAAAAAAGAGAGGACTATTTGGA
GCTATAGCAGGTTTTATAGAGGGAGGATGGCAGGGAATGGTAGATGGTTG
GTATGGGTACCACCATAGCAATGAGCAGGGGAGTGGATACGCTGCAGACC
AAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCG
ATCATTAACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAA
TAACTTAGAAAGGAGAATAGAGAATTTAAACAAGAAAATGGAAGACGGAT
TCCTAGATGTCTGGACTTACAATGCTGAACTTCTGGTTCTCATGGAAAAT
GAGAGAACTCTCGACTTTCATGACTCAAATGTCAAGAACCTTTACGACAA
GGTCCGACTACAGCTTAGGGATAATGCAAAGGAACTGGGTAATGGTTGTT
TCGAATTCTATCACAAATGTGATAATGAATGTATGGAAAGTGTAAGAAAC
GGAACGTATGACTACCCGCAGTATTCAGAAGAAGCAAGACTAAACAGAGA
GGAAATAAGTGGAGTAAAATTGGAATCAATGGGAACTTACCAAATACTGT
CAATTTATTCAACAGTGGCGAGTTCCCTAGCACTGGCAATCATGGTAGCT
GGTCTATCTTTATGGATGTGCTCCAATGGATCGTTACAATGCAGAATT
\ No newline at end of file
+>CHICKEN_HEBEI_326_2005
ATGGAGAGAATAGTGCTTCTTCTTGCAATAATCGGTCTTGTTAAAAGTGA
TCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACA
CAATAATGGAAAAGAACGTTACTGTTACACATGCTCAAGACATACTGGAG
AAGACACACAACGGGAAGCTCTGCAACCCAGATGGAGTGAAGCCTCTAAT
TTTGAAAGATTGTAGTGTAGCTGGATGGCTCCTCGGAAACCCAATGTGTG
ACGAATTTATCAATGTGCCGGAATGGTCTTACATAGTGGAGAAGGCCAGT
CCAGCCAATGGCCTCTGTTACCCAGGGGATTTCAATGACTATGAAGAACT
GAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCC
CCAAAAGTTCTTGGTCCGATCATGGAGCCTCATCAGGGGTGAGCTCAGCA
TGTTCCTATCTGGGGAAGCCCTCCTTTTTCAGAAATGTGGTATGGCTTAT
CAAAAAGAATAATACATACCCACCAATAAAGGTGAGCTACAACAATACCA
ACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCCAATGATGAG
GCAGAGCAGATAAAGATCTATCAAAACCCAACCACCTATATTTCCGTTGG
AACATCAACACTAAACCAGAGATTGGTACCAAAAATAGCTACTAGATCCA
AAGTAAACGGGCAAAGTGGAAGAATGGAGTTCTTCTGGACAATTTTAAAG
CCGAATGATGCTATCAATTTCGATAGTAATGGAAATTTCATTGCTCCAGA
ATATGCATACAAAATTGTCAAGAAAGGGGACTCAGCGATTATGAAAAGTG
AATTGGAATATGGCAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCG
ATAAATTCTAGTATGCCATTCCACAACATACACCCTCTCACCGTCGGGGA
ATGCCCCAAATATGTGAAATCAAACAGATTAGTCCTCGCGACTGGACTCA
GAAATGCCCCTCAAAGAGAGGGAGGAAGAAAAAAGAGAGGACTATTTGGA
GCCATAGCAGGGTTTATAGAGGGAGGATGGCAGGGAATGGTAGATGGTTG
GTATGGGTACCACCATAGCAATGAGCAGGGGAGTGGATACGCTGCAGACA
AAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCG
ATCATTGACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAA
TAACTTAGAAAGGAGAATAGAAAATTTAAACAAGAAGATGGAGGACGGAT
TCCTAGATGTCTGGACTTATAACGCTGAACTTCTGGTTCTCATGGAAAAT
GAGAGAACTCTAGACTTTCATGACTCAAATGTCAAGAACCTTTACGAAAA
GGTCCGACTACAGCTTAGGGATAATGCAAAGGAGCTGGGTAACGGTTGTT
TCGAGTTCTATCACAAATGTGATAATGAATGTATGGAAAGTGTAAAAAAC
GGAACGTATGACTACCCGCAGTATTCAGAAGAAGCAAGACTAAACAGAGA
GGAAATAAGTGGAGTAAAATTGGAATCAATGGGAACTTACCAAATACTGT
CAATTTATTCAACAGTGGCGAGTTCCCTAGCATTGGCAATCATGGTAGCT
GGTCTATCTTTATGGATGTGCTCCAATGGATCGTTACAATGCAGAATT
>MALLARD_VIETNAM_16_2003
ATGGAGAAAATAGTGCTTCTTTTTGCAATAGTCAGTCTTGTTAAAAGTGA
TCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACA
CAATAATGGAAAAGAACGTTACTGTTACACATGCCCAAGACATACTGGAA
AAGACACACAACGGGAAGCTCTGCGATCTAGATGGAGTGAAGCCTCTAAT
TTTGAGAGATTGTAGTGTAGCTGGATGGCTCCTCGGAAACCCAATGTGTG
ACGAATTCATCAATGTGCCGGAATGGTCTTACATAGTGGAGAAGGCCAAT
CCAGTCAATGACCTCTGTTACCCAGGGGATTTCAATGAATATGAAGAATT
GAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCC
CCAAAAGTTCTTGGTCCAGTCATGAAGCCTCATTAGGGGTGAGCTCAGCA
TGTCCATACCAGGGAAAGTCCTCCTTTTTCAGAAATGTGGTATGGCTTGT
CAAAAAGAACAGTACATACCCAACAATAAAGAGGAGCTACAATAATACCA
ACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCG
GCAGAGCAGACAAAGCTCTATCAAAATCCAACCACCTACATTTCCGTTGG
GACATCAACACTAAACCAGAGATTGGTACCAAGAATAGCTACTAGATCCA
AAGTAAACGGGCAAAGTGGAAGGATGGAGTTCTTCTGGACAATTTTAAAA
CCGAATGATGCAATCAACTTCGAGAGTAATGGAAATTTCATTGCTCCAGA
ATATGCATACAAAATTGTCAAGAAAGGGGACTCAACAATTATGAAAAGTG
AATTGGAATATGGTAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCG
ATAAACTCTAGTATGCCATTCCACAATATACACCCCCTCACCATCGGGGA
ATGCCCCAAATATGTGAAATCAAACAGATTAGTCCTTGCGACTGGGCTCA
GAAATAGCCCTCAAAGAGAGAGAAGAAGAAAAAAGAGAGGATTATTTGGA
GCTATAGCAGGTTTTATAGAGGGAGGATGGCAAGGAATGGTAGATGGTTG
GTATGGGTACCACCATAGCAATGAGCAGGGGAGTGGGTACGCTGCAGACA
AAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCG
ATCATTGACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAA
CAACTTAGAAAGGAGAATAGAGAATTTAAACAAGAAGATGGAAGACGGGT
TCCTAGATGTCTGGACTTATAATGCTGAACTTCTGGTTCTCATGGAAAAT
GAGAGAACTCTAGACTTTCATGACTCAAATGTCAAGAACCTTTACGACAA
GGTCCGACTACAGCTTAGGGATAATGCAAAGGAGCTGGGTAACGGTTGTT
TCGAGTTCTATCATAAATGTGATAATGAATGTATGGAAAGTGTAAGAAAC
GGAACGTATGACTACCCGCAGTATTCAGAAGAAGCAAGACTAAAAAGAGA
GGAAATAAGTGGAGTAAAATTGGAATCAATAGGAATTTACCAAATACTGT
CAATTTATTCTACAGTGGCGAGTTCCCTAGCACTGGCAATCATGGTAGCT
GGTCTATCCTTATGGATGTGCTCCAATGGGTCGTTACAATGCAGA---
>CHICKEN_CK_160_2005
ATGGAGAAAATAGTGCTTCTTTTTGCAATAGTCAGTCTTGTTAAAAGTGA
TCAGATTTGCATTGGTTACCATGCAAACAACTCAACAGAGCAGGTTGACA
CAATAATGGAAAAGAACGTTACTGTTACACATGCCCAAGACATACTGGAA
AAGACACACAACGGGAAGCTCTGTGATCTAGATGGAGTGAAGCCTCTAAT
TTTGAGAGATTGTAGTGTAGCTGGATGGCTCCTTGGAAACCCAATGTGTG
ATGAATTCATCAATGTGCCGGAATGGTCTTACATAGTGGAGAAGGCCAAT
CCAGCCAATGACCTCTGTTACCCAGGGGATTTCAATGACTATGAAGAATT
GAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCC
CCAAAAGTTCTTGGTCCAGTCATGAAGCCTCATTAGGAGTGAGCTCAGCA
TGTCCATATCAGGGAAAGTCCTCCTTTTTCAGAAATGTGGTATGGCTTAT
CAAAAAGAACAGTACATACCCAACAATAAAGAGGAGCTACAATAATACCA
ACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCG
GCAGAGCAGACAAAGCTCTATCAAAACCCAACCACCTACATTTCCGTTGG
GACATCAACACTAAACCAGAGATTGGTACCAAGAATAGCTACTAGATCCA
AAGTAAACGGGCAAAGTGGAAGGATGGAGTTCTTCTGGACAATTTTAAAA
CCGAATGATGCAATCAACTTCGAGAGTAATGGAAATTTCATTGCTCCAGA
ATATGCATACAAAATTGTCAAGAAAGGGGACTCAACAATTATGAAAAGTG
AATTGGAATATGGTAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCG
ATAAACTCTAGTATGCCATTCCACAATATACACCCTCTCACCATCGGGGA
ATGCCCCAAATATGTGAAATCAAACAGATTAGTCCTTGCGACTGGACTCA
GAAATAGCCCTCAAAGAGAGAAAAGAAGAAAAAAGAGAGGATTATTTGGA
GCTATAGCAGGTTTTATAGAGGGAGGATGGCAGGGAATGGTAGATGGTTG
GTATGGGTACCACCATAGCAATGAGCAGGGGAGTGGGTACGCTGCAGACA
AAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCG
ATCATTGACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAA
CAACTTAGAAAGGAGAATAGAGAATTTAAACAAGAAGATGGAAGACGGGT
TCCTAGATGTCTGGACTTATAATGCTGAACTTCTGGTTCTCATGGAAAAT
GAGAGAACTCTAGACTTTCATGACTCAAATGTCAAGAACCTTTACGACAA
GGTCCGACTACAGCTTAGGGATAATGCAAAGGAGCTGGGTAACGGTTGTT
TCGAGTTCTATCATAAATGTGATAATGAATGTATGGAAAGTGTAAGGAAC
GGAACGTATGACTACCCGCAGTATTCAGAAGAAGCAAGACTAAAAAGAGA
GGAAATAAGTGGAGTAAAATTGGAATCAATAGGAATTTACCAAATACTGT
CAATTTATTCTACAGTAGCGAGTTCCCTAGCACTGGCAATCATGGTAGCT
GGTCTATCCTTATGGATGTGCTTCAATGGGTCGTTACAATGCAGAATT
>CK_HK_WF157_2003
ATGGAGAAAATAGTGCTTCTTCTTGCAATAGTCAGTCTTGTTAAAAGTGA
TCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACA
CAATAATGGAAAAGAACGTTACTGTTACACATGCCCAAGACATACTGGAA
AAGACCCACAACGGGAAGCTCTGCGACCTAGATGGAGTGAAGCCTCTAAT
TTTGAGAGATTGTAGTGTAGCTGGATGGCTCCTCGGGAACCCAATGTGTG
ACGAATTCATCAATGTACCGGAATGGTCTTACATAGTGGAGAAGGCCAGT
CCATCCAATGACCTCTGTTACCCAGGGGATTTCAACAATTATGAAGAACT
GAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCC
CCAAAAGCTCTTGGTCCAATCATGAAGCCTCATCAGGGGTGAGCTCAGCA
TGTCCATACCTGGGAAAGCCCTCCTTTTTCAGAAATGTGGTATGGCTTAT
CAAAAAGAACAGTACATACCCAACAATAAAGAGGAGCTACAATAATACCA
ACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCG
GCAGAGCAGATAAAGCTCTATCAAAACCCAACCACCTATATTTCCGTTGG
AACATCAACACTAAACCAGAGATTGGTACCAAAAATAGCTACTAGATCCA
AAGTAAACGGGCAAAGTGGAAGGATGGAGTTCTTCTGGACAATTTTAAAA
CCGAATGATGCAATCAACTTCGAGAGTAATGGAAATTTCATTGCTCCAGA
ATATGCATACAAAATTGTCAAGAAAGGGGACTCAGCAATTATGAAAAGTG
AATTGGAATATGGTAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCG
ATAAACTCTAGTATGCCCTTCCACAACATACACCCTCTCACCATCGGGGA
ATGCCCCAAATATGTGAAATCAAACAGACTAGTCCTTGCGACTGGGCTCA
GAAATAGCCCTCAAAGAGAGAGAAGAAGAAAAAAGAGAGGACTATTTGGA
GCTATAGCGGGTTTTATAGAGGGAGGATGGCAGGGAATGGTAGATGGTTG
GTATGGATACCACCATAGCAATGAGCAGGGGAGTGGATACGCTGCAGACA
AAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCG
ATCATTGACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAA
TAACTTAGAAAGGAGAATAGAGAATTTAAACAAGAAGATGGAAGACGGAT
TCCTAGATGTCTGGACTTATAATGCTGAACTTCTAGTTCTCATGGAAAAT
GAGAGAACTCTAGACTTTCATGACTCAAATGTCAAGAACCTTTACGACAA
GGTCCGACTACAGCTTAGGGATAATGCAAAAGAGCTGGGTAACGGTTGTT
TCGAGTTCTATCACAAATGTGATAATGAATGTATGGAAAGTGTAAGAAAC
GGAACGTATGACTACTCGCAGTATTCAGAAGAAGCAAGACTAAAAAGAGA
GGAAATAAGTGGAGTAAAATTGGAATCAATAGGAACTTACCAAATACTGT
CAATTTATTCAACAGTGGCGAGTTCCCTAGCACTGGCAATCATGGTAGCT
GGTCTATCTTTATGGATGTGCTCCAATGGTTCGTTACAATGT------
>SWINE_ANHUI_1_2004
ATGGAGAAAATAGTGCTTCTTCTTGCAATAGTCAGTCTTGTTAAAGGTGA
TCAGATTTGCACTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACA
CAATAATGGAAAAGAACGTTACTGTTACACATGCTCAAGACATACTGGAA
AAGACACACAACGGGAAGCTCTGCGACCTAGATGGAGTGAAGCCTCTAAT
TTTAAGAGATTGTAGTGTAGCTGGATGGCTCCTCGGGAACCCAATGTGTG
ACGAATTCATCAATGTGCCGGAATGGTCTTACATAGTGGAGAAGGCCAAT
CCAGCCAATGACCTCTGTTACCCAGGGGATTTCAACGACTATGAAGAACT
GAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCC
CCAAAAGTTCTTGGTCCGATCATGAAGCCTCATCAGGGGTGAGCTCAGCA
TGTCCATACCAGGGAAGGTCCTCCTTTTTCAGAAATGTGGTATGGCTTAT
CAAAAAGAACAGTGCATACCCAACAATAAAGAGGAGCTACAATAATACCA
ACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCACCCTAATGATGCG
GCAGAGCAGATAAAGCTCTATCAAAACCCAACCACCTATATTTCCGTTGG
GACATCAACACTAAACCAGAGATTGGTACCAAAAATAGCTACTAGATCCA
AAGTAAACGGACAAAGTGGAAGAATGGAGTTCTTCTGGACAATTTTAAAA
CCGAATGATGCTATCAATTTCGAGAGTAATGGAAATTTCATTGCTCCAGA
ATATGCATACAAAATTGTCAAGAAAGGGGACTCTGCAATTATGAAAAGTG
AATTGGAATATGGCAACTGCAACACCAAGTGTCAAACTCCAGTGGGGGCG
ATAAATTCTAGCATGCCATTCCACAACATACACCCTCTCACCATCGGGGA
ATGCCCCAAATATGTGAAATCAAACAGATTAGTCCTTGCGACTGGACTCA
GAAATGCCCCTCAAAGAGAGGGAAGAAGAAAAAAGAGAGGACTATTTGGA
GCTATAGCAGGGTTTATAGAGGGAGGATGGCAGGGGATGGTAGATGGTTG
GTATGGGTACCACCATAGCAATGAGCAGGGGAGTGGATACGCTGCAGACA
AAGAATCCACTCAAAAAGCAATAGATGGAGTCACCAATAAGGTCAACTCG
ATCATTGACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAA
TAACTTAGAAAGGAGAATAGAAAATTTAAACAAGAAGATGGAGGACGGAT
TCCTAGATGTCTGGACTTATAATGCTGAACTTCTGGTTCTCATGGAAAAT
GAGAGAACTCTAGACTTTCATGACTCAAATGTCAAGAACCTTTACGACAA
GGTCCGACTACAGCTTAGGGATAATGCAAAGGAGCTGGGTAACGGTTGTT
TCGAGTTCTATCACAGATGTGATAATGAATGTATGGAAAGTGTAAGAAAC
GGAACGTATGACTACCCGCAGTATTCGGAAGAAGCAAGACTAAACAGAGA
GGAAATAAGTGGAGTAAAATTGGAATCAATAGGAACTTACCAAATACTGT
CAATTTATTCAACAGTGGCGAGTTCCCTAGCACTGGCAATCATGGTGGCT
GGTCTATCTTTATGGATGTGCTCCAATGGATCGTTACAATGCAGAATT
\ No newline at end of file
diff -r bece0bad8e89 -r 3285fd1f4bde test-data/meme-in1.nhx
--- a/test-data/meme-in1.nhx Mon Feb 17 14:52:11 2020 -0500
+++ b/test-data/meme-in1.nhx Thu Feb 20 18:10:47 2020 -0500
@@ -1,1 +1,1 @@
-((((((CHICKEN_HEBEI_326_2005:0.02100885319673648,(SWINE_ANHUI_1_2004:0.007702393698306516):0.002095219592954275):0.003887237703073042):0.003404921392531202,(((CHICKEN_HONGKONG_915_97,(GOOSE_HONGKONG_W355_97):0.002899766890966483):0.001306376767766534,HONGKONG_1_97_98:0.003844928589233716):0.000182535836694054,HONGKONG_1_538_97):0.02096173714686362):0.003130608143291779,(((GOOSE_SHANTOU_2216_2005:0.006207842095177651):0.002530613798219486,PEREGRINEFALCON_HK_D0028_2004:0.003608296348267232):0.003288900909856382,CK_HK_WF157_2003:0.00663129750258774):0.004655295319725731):0.0116808817874948,(((HUMAN_VIETNAM_CL105_2005:0.006521522005742001):0.001967887030302483,HUMAN_VIETNAM_3062_2004:0.001641397323851184):0.0003125512332168847,MALLARD_VIETNAM_16_2003:0.003244216605281072):0.0004125980823087554):0.0003400912533471183,CHICKEN_CK_160_2005:0.006168335080088849)
+((((((CHICKEN_HEBEI_326_2005:0.02100885319673648,(SWINE_ANHUI_1_2004:0.007702393698306516):0.002095219592954275):0.003887237703073042)):0.003130608143291779,(CK_HK_WF157_2003:0.00663129750258774):0.004655295319725731):0.0116808817874948,(MALLARD_VIETNAM_16_2003:0.003244216605281072):0.0004125980823087554):0.0003400912533471183,CHICKEN_CK_160_2005:0.006168335080088849)
diff -r bece0bad8e89 -r 3285fd1f4bde test-data/meme-out1.json
--- a/test-data/meme-out1.json Mon Feb 17 14:52:11 2020 -0500
+++ b/test-data/meme-out1.json Thu Feb 20 18:10:47 2020 -0500
@@ -4,568 +4,568 @@
"0": [
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@@ -593,186 +593,10 @@
"branch attributes":{
"0":{
"CHICKEN_CK_160_2005":{
- "EBF site 10 (partition 1)":1,
"EBF site 100 (partition 1)":1,
- "EBF site 102 (partition 1)":0.08580161701153581,
+ "EBF site 102 (partition 1)":0.4618577742407079,
"EBF site 104 (partition 1)":1,
- "EBF site 107 (partition 1)":1,
- "EBF site 109 (partition 1)":1,
"EBF site 11 (partition 1)":1,
- "EBF site 110 (partition 1)":1,
- "EBF site 112 (partition 1)":1,
- "EBF site 113 (partition 1)":1,
- "EBF site 117 (partition 1)":1,
- "EBF site 12 (partition 1)":1,
- "EBF site 136 (partition 1)":1,
- "EBF site 140 (partition 1)":1,
- "EBF site 142 (partition 1)":1,
- "EBF site 145 (partition 1)":0.9629323384920349,
- "EBF site 146 (partition 1)":1,
- "EBF site 147 (partition 1)":1,
- "EBF site 150 (partition 1)":0.8846350834911286,
- "EBF site 152 (partition 1)":1,
- "EBF site 153 (partition 1)":1,
- "EBF site 154 (partition 1)":0.6616021740572309,
- "EBF site 155 (partition 1)":1,
- "EBF site 156 (partition 1)":1,
- "EBF site 157 (partition 1)":1,
- "EBF site 16 (partition 1)":1,
- "EBF site 167 (partition 1)":0.3783931497987309,
- "EBF site 17 (partition 1)":1,
- "EBF site 170 (partition 1)":1,
- "EBF site 171 (partition 1)":1,
- "EBF site 172 (partition 1)":1,
- "EBF site 175 (partition 1)":1,
- "EBF site 178 (partition 1)":0.3661215769681019,
- "EBF site 181 (partition 1)":1,
- "EBF site 191 (partition 1)":0.3892538364474059,
- "EBF site 195 (partition 1)":1,
- "EBF site 196 (partition 1)":1,
- "EBF site 197 (partition 1)":1,
- "EBF site 200 (partition 1)":1,
- "EBF site 204 (partition 1)":1,
- "EBF site 206 (partition 1)":1,
- "EBF site 209 (partition 1)":1,
- "EBF site 21 (partition 1)":1,
- "EBF site 211 (partition 1)":0.8830173900401994,
- "EBF site 213 (partition 1)":1,
- "EBF site 214 (partition 1)":0.3707369961642368,
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- "EBF site 222 (partition 1)":1,
- "EBF site 224 (partition 1)":1,
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- "EBF site 230 (partition 1)":1,
- "EBF site 231 (partition 1)":1,
- "EBF site 233 (partition 1)":1,
- "EBF site 237 (partition 1)":1,
- "EBF site 240 (partition 1)":1,
- "EBF site 241 (partition 1)":1,
- "EBF site 250 (partition 1)":1,
- "EBF site 254 (partition 1)":1,
- "EBF site 256 (partition 1)":1,
- "EBF site 258 (partition 1)":1,
- "EBF site 265 (partition 1)":1,
- "EBF site 271 (partition 1)":1,
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- "EBF site 279 (partition 1)":1,
- "EBF site 28 (partition 1)":1,
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- "EBF site 288 (partition 1)":1,
- "EBF site 291 (partition 1)":1,
- "EBF site 298 (partition 1)":0.9313368604615063,
- "EBF site 3 (partition 1)":1,
- "EBF site 302 (partition 1)":1,
- "EBF site 304 (partition 1)":1,
- "EBF site 306 (partition 1)":1,
- "EBF site 309 (partition 1)":1,
- "EBF site 312 (partition 1)":1,
- "EBF site 315 (partition 1)":1,
- "EBF site 327 (partition 1)":1,
- "EBF site 328 (partition 1)":1,
- "EBF site 329 (partition 1)":1,
- "EBF site 33 (partition 1)":1,
- "EBF site 332 (partition 1)":1,
- "EBF site 336 (partition 1)":0.04701120253575093,
- "EBF site 338 (partition 1)":0.6031756073048148,
- "EBF site 339 (partition 1)":1,
- "EBF site 341 (partition 1)":1,
- "EBF site 342 (partition 1)":1,
- "EBF site 344 (partition 1)":1,
- "EBF site 348 (partition 1)":1,
- "EBF site 351 (partition 1)":1,
- "EBF site 353 (partition 1)":1,
- "EBF site 354 (partition 1)":1,
- "EBF site 357 (partition 1)":1,
- "EBF site 361 (partition 1)":1,
- "EBF site 362 (partition 1)":1,
- "EBF site 369 (partition 1)":1,
- "EBF site 379 (partition 1)":1,
- "EBF site 384 (partition 1)":1,
- "EBF site 389 (partition 1)":1,
- "EBF site 39 (partition 1)":1,
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- "EBF site 84 (partition 1)":1,
- "EBF site 86 (partition 1)":1,
- "EBF site 89 (partition 1)":1,
- "EBF site 9 (partition 1)":1,
- "EBF site 99 (partition 1)":0.8274022600721103,
- "Global MG94xREV":0.01081751233170446,
- "Nucleotide GTR":0.007656566904909031,
+ "Global MG94xREV":0.007944352318354534,
+ "Nucleotide GTR":0.00775874788653539,
"original name":"SWINE_ANHUI_1_2004"
}
},
"attributes":{
- "EBF site 10 (partition 1)":{
- "attribute type":"branch label",
- "display order":12
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"EBF site 100 (partition 1)":{
"attribute type":"branch label",
"display order":102
@@ -5411,22 +1955,10 @@
"attribute type":"branch label",
"display order":106
},
- "EBF site 107 (partition 1)":{
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- "EBF site 109 (partition 1)":{
- "attribute type":"branch label",
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"EBF site 11 (partition 1)":{
"attribute type":"branch label",
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- "EBF site 110 (partition 1)":{
- "attribute type":"branch label",
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- },
"EBF site 112 (partition 1)":{
"attribute type":"branch label",
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@@ -5463,14 +1995,6 @@
"attribute type":"branch label",
"display order":148
},
- "EBF site 147 (partition 1)":{
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- "EBF site 150 (partition 1)":{
- "attribute type":"branch label",
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"EBF site 152 (partition 1)":{
"attribute type":"branch label",
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@@ -5503,10 +2027,6 @@
"attribute type":"branch label",
"display order":169
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- "EBF site 17 (partition 1)":{
- "attribute type":"branch label",
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"EBF site 170 (partition 1)":{
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@@ -5531,14 +2051,6 @@
"attribute type":"branch label",
"display order":183
},
- "EBF site 191 (partition 1)":{
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- "EBF site 195 (partition 1)":{
- "attribute type":"branch label",
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"EBF site 196 (partition 1)":{
"attribute type":"branch label",
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@@ -5567,62 +2079,22 @@
"attribute type":"branch label",
"display order":23
},
- "EBF site 211 (partition 1)":{
- "attribute type":"branch label",
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- },
"EBF site 213 (partition 1)":{
"attribute type":"branch label",
"display order":215
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- "EBF site 214 (partition 1)":{
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"EBF site 217 (partition 1)":{
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"display order":219
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- "EBF site 221 (partition 1)":{
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- "EBF site 222 (partition 1)":{
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- "EBF site 224 (partition 1)":{
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- "EBF site 226 (partition 1)":{
- "attribute type":"branch label",
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"EBF site 228 (partition 1)":{
"attribute type":"branch label",
"display order":230
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- "EBF site 230 (partition 1)":{
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- "EBF site 231 (partition 1)":{
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- "EBF site 233 (partition 1)":{
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"EBF site 237 (partition 1)":{
"attribute type":"branch label",
"display order":239
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- "EBF site 240 (partition 1)":{
- "attribute type":"branch label",
- "display order":242
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"EBF site 241 (partition 1)":{
"attribute type":"branch label",
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@@ -5643,14 +2115,6 @@
"attribute type":"branch label",
"display order":260
},
- "EBF site 265 (partition 1)":{
- "attribute type":"branch label",
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- },
- "EBF site 271 (partition 1)":{
- "attribute type":"branch label",
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"EBF site 278 (partition 1)":{
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@@ -5663,18 +2127,10 @@
"attribute type":"branch label",
"display order":30
},
- "EBF site 283 (partition 1)":{
- "attribute type":"branch label",
- "display order":285
- },
"EBF site 288 (partition 1)":{
"attribute type":"branch label",
"display order":290
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- "EBF site 291 (partition 1)":{
- "attribute type":"branch label",
- "display order":293
- },
"EBF site 298 (partition 1)":{
"attribute type":"branch label",
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@@ -5711,18 +2167,10 @@
"attribute type":"branch label",
"display order":329
},
- "EBF site 328 (partition 1)":{
- "attribute type":"branch label",
- "display order":330
- },
"EBF site 329 (partition 1)":{
"attribute type":"branch label",
"display order":331
},
- "EBF site 33 (partition 1)":{
- "attribute type":"branch label",
- "display order":35
- },
"EBF site 332 (partition 1)":{
"attribute type":"branch label",
"display order":334
@@ -5731,14 +2179,6 @@
"attribute type":"branch label",
"display order":338
},
- "EBF site 338 (partition 1)":{
- "attribute type":"branch label",
- "display order":340
- },
- "EBF site 339 (partition 1)":{
- "attribute type":"branch label",
- "display order":341
- },
"EBF site 341 (partition 1)":{
"attribute type":"branch label",
"display order":343
@@ -5747,10 +2187,6 @@
"attribute type":"branch label",
"display order":344
},
- "EBF site 344 (partition 1)":{
- "attribute type":"branch label",
- "display order":346
- },
"EBF site 348 (partition 1)":{
"attribute type":"branch label",
"display order":350
@@ -5767,10 +2203,6 @@
"attribute type":"branch label",
"display order":356
},
- "EBF site 357 (partition 1)":{
- "attribute type":"branch label",
- "display order":359
- },
"EBF site 361 (partition 1)":{
"attribute type":"branch label",
"display order":363
@@ -5787,26 +2219,10 @@
"attribute type":"branch label",
"display order":381
},
- "EBF site 384 (partition 1)":{
- "attribute type":"branch label",
- "display order":386
- },
"EBF site 389 (partition 1)":{
"attribute type":"branch label",
"display order":391
},
- "EBF site 39 (partition 1)":{
- "attribute type":"branch label",
- "display order":41
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- "EBF site 403 (partition 1)":{
- "attribute type":"branch label",
- "display order":405
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- "EBF site 408 (partition 1)":{
- "attribute type":"branch label",
- "display order":410
- },
"EBF site 417 (partition 1)":{
"attribute type":"branch label",
"display order":419
@@ -5815,10 +2231,6 @@
"attribute type":"branch label",
"display order":426
},
- "EBF site 429 (partition 1)":{
- "attribute type":"branch label",
- "display order":431
- },
"EBF site 431 (partition 1)":{
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@@ -5827,10 +2239,6 @@
"attribute type":"branch label",
"display order":435
},
- "EBF site 440 (partition 1)":{
- "attribute type":"branch label",
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- },
"EBF site 441 (partition 1)":{
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@@ -5843,10 +2251,6 @@
"attribute type":"branch label",
"display order":47
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- "EBF site 454 (partition 1)":{
- "attribute type":"branch label",
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- },
"EBF site 466 (partition 1)":{
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@@ -5855,22 +2259,6 @@
"attribute type":"branch label",
"display order":479
},
- "EBF site 478 (partition 1)":{
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- "EBF site 479 (partition 1)":{
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- "EBF site 481 (partition 1)":{
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- "EBF site 485 (partition 1)":{
- "attribute type":"branch label",
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"EBF site 488 (partition 1)":{
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@@ -5879,10 +2267,6 @@
"attribute type":"branch label",
"display order":491
},
- "EBF site 494 (partition 1)":{
- "attribute type":"branch label",
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- },
"EBF site 499 (partition 1)":{
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@@ -5895,34 +2279,14 @@
"attribute type":"branch label",
"display order":508
},
- "EBF site 507 (partition 1)":{
- "attribute type":"branch label",
- "display order":509
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"EBF site 509 (partition 1)":{
"attribute type":"branch label",
"display order":511
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- "EBF site 51 (partition 1)":{
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- "display order":53
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- "EBF site 513 (partition 1)":{
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- "EBF site 514 (partition 1)":{
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"EBF site 515 (partition 1)":{
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"display order":517
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- "EBF site 519 (partition 1)":{
- "attribute type":"branch label",
- "display order":521
- },
"EBF site 52 (partition 1)":{
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"display order":54
@@ -5943,18 +2307,6 @@
"attribute type":"branch label",
"display order":541
},
- "EBF site 54 (partition 1)":{
- "attribute type":"branch label",
- "display order":56
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- "EBF site 540 (partition 1)":{
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- "display order":542
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- "EBF site 544 (partition 1)":{
- "attribute type":"branch label",
- "display order":546
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"EBF site 545 (partition 1)":{
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"display order":547
@@ -5991,22 +2343,6 @@
"attribute type":"branch label",
"display order":62
},
- "EBF site 61 (partition 1)":{
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- "display order":63
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- "EBF site 62 (partition 1)":{
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- "display order":64
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- "EBF site 64 (partition 1)":{
- "attribute type":"branch label",
- "display order":66
- },
- "EBF site 66 (partition 1)":{
- "attribute type":"branch label",
- "display order":68
- },
"EBF site 68 (partition 1)":{
"attribute type":"branch label",
"display order":70
@@ -6015,18 +2351,6 @@
"attribute type":"branch label",
"display order":71
},
- "EBF site 70 (partition 1)":{
- "attribute type":"branch label",
- "display order":72
- },
- "EBF site 73 (partition 1)":{
- "attribute type":"branch label",
- "display order":75
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- "EBF site 77 (partition 1)":{
- "attribute type":"branch label",
- "display order":79
- },
"EBF site 78 (partition 1)":{
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"display order":80
@@ -6039,10 +2363,6 @@
"attribute type":"branch label",
"display order":10
},
- "EBF site 81 (partition 1)":{
- "attribute type":"branch label",
- "display order":83
- },
"EBF site 84 (partition 1)":{
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"display order":86
@@ -6055,14 +2375,6 @@
"attribute type":"branch label",
"display order":91
},
- "EBF site 9 (partition 1)":{
- "attribute type":"branch label",
- "display order":11
- },
- "EBF site 99 (partition 1)":{
- "attribute type":"branch label",
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- },
"Global MG94xREV":{
"attribute type":"branch length",
"display order":1
@@ -6087,153 +2399,137 @@
},
"fits":{
"Global MG94xREV":{
- "AIC-c":7226.087178885974,
+ "AIC-c":6011.13695012892,
"Equilibrium frequencies": [
-[0.0485984009412611],
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- [0.03108082672838122],
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- [0.01249582512460089],
- [0.01313471975854296],
- [0.01457843439605254],
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- [0.01638637286596178],
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- [0.01948657168142254],
- [0.0216284558851606],
- [0.02112660536120122],
- [0.01285418156565452],
- [0.01351139847963371],
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- [0.008928077856285582],
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- [0.005709900644757894],
- [0.006337509553901212],
- [0.01003528971321133],
- [0.006105828827307119],
- [0.006418011595122538],
- [0.007123453161742795],
- [0.01324562931848419],
- [0.008059114150152886],
- [0.008471165754069981],
- [0.009402281622603544],
- [0.03932718962871962],
- [0.02392806734975356],
- [0.02515147706283166],
- [0.0279160244805243],
- [0.01661962273972026],
- [0.01011197230206122],
- [0.01062898376612524],
- [0.01179727815893297],
- [0.01868069833194261],
- [0.0113660043356041],
- [0.01194713276105585],
- [0.01326031269640911],
- [0.02465674759639369],
- [0.01500204623524711],
- [0.01576908056409512],
- [0.01750235335932507],
- [0.02110645419006403],
- [0.02462414883970813],
- [0.01465982608978509],
- [0.008919561995751803],
- [0.009375607133978042],
- [0.01040613549725428],
- [0.01002571776178019],
- [0.01053831914788704],
- [0.0116966480569341],
- [0.02174920799128454],
- [0.01323299525169244],
- [0.01390958039696969],
- [0.01543846454447198]
+[0.0487448731499957],
+ [0.02916309663834602],
+ [0.03100171502919514],
+ [0.03392179881163448],
+ [0.02040080210426937],
+ [0.01220539771302355],
+ [0.01297489997065711],
+ [0.01419701929364967],
+ [0.02306796533539959],
+ [0.0138011088931582],
+ [0.01467121445635504],
+ [0.01605311140503505],
+ [0.03067687144383888],
+ [0.01835336741416609],
+ [0.01951047494908151],
+ [0.02134818687672324],
+ [0.02126077850204813],
+ [0.01271990463804815],
+ [0.01352184453103644],
+ [0.01479548113102975],
+ [0.008898103672735205],
+ [0.005323560008197935],
+ [0.005659189501089015],
+ [0.006192234446128948],
+ [0.010061425331433],
+ [0.006019552422614294],
+ [0.006399061496227086],
+ [0.007001795754005012],
+ [0.01338015932252603],
+ [0.008005085543223482],
+ [0.008509774660521757],
+ [0.009311319186526256],
+ [0.04013232935583105],
+ [0.02401038147590574],
+ [0.02552414146855538],
+ [0.02792828690027832],
+ [0.01679626299677307],
+ [0.01004887302569606],
+ [0.0106824148947738],
+ [0.01168860266413242],
+ [0.01899217543474583],
+ [0.01136264414662781],
+ [0.01207901411089265],
+ [0.0132167490129733],
+ [0.02525669324448205],
+ [0.01511058165209229],
+ [0.0160632443156804],
+ [0.01757625800461362],
+ [0.02112670632168297],
+ [0.02457406668036405],
+ [0.01477901198657192],
+ [0.008841991514828857],
+ [0.009399444257673735],
+ [0.01028478768834936],
+ [0.009997977173519282],
+ [0.01062831025955897],
+ [0.01162940185705429],
+ [0.02222333457585675],
+ [0.01329578296096281],
+ [0.01413402971424556],
+ [0.01546532867335853]
],
- "Log Likelihood":-3569.784907463222,
+ "Log Likelihood":-2978.298667783946,
"Rate Distributions":{
"non-synonymous/synonymous rate ratio for *test*": [
-[0.248895715005128, 1]
+[0.2932353608697501, 1]
]
},
"display order":1,
- "estimated parameters":43
+ "estimated parameters":27
},
"Nucleotide GTR":{
- "AIC-c":7431.204675852382,
+ "AIC-c":6152.529196194525,
"Equilibrium frequencies": [
-[0.3476574973769445],
- [0.1861228958532913],
- [0.2296428082660462],
- [0.2365767985037179]
+[0.3478363400542389],
+ [0.184883858035609],
+ [0.2307510906732697],
+ [0.2365287112368824]
],
- "Log Likelihood":-3679.541894127126,
+ "Log Likelihood":-3056.215005465311,
"Rate Distributions":{
- "Substitution rate from nucleotide A to nucleotide C":0.2089484190839437,
+ "Substitution rate from nucleotide A to nucleotide C":0.1810796022573985,
"Substitution rate from nucleotide A to nucleotide G":1,
- "Substitution rate from nucleotide A to nucleotide T":0.1069376934774225,
- "Substitution rate from nucleotide C to nucleotide G":0.01756475048192434,
- "Substitution rate from nucleotide C to nucleotide T":1.483513244796427,
- "Substitution rate from nucleotide G to nucleotide T":0.1186889750817524
+ "Substitution rate from nucleotide A to nucleotide T":0.08708610799393901,
+ "Substitution rate from nucleotide C to nucleotide G":0.02931879134098465,
+ "Substitution rate from nucleotide C to nucleotide T":1.419136867291551,
+ "Substitution rate from nucleotide G to nucleotide T":0.1065442350926398
},
"display order":0,
- "estimated parameters":36
+ "estimated parameters":20
}
},
"input":{
- "file name":"/tmp/tmpu23i1b/job_working_directory/000/3/working/meme_input.fa",
- "number of sequences":13,
+ "file name":"/tmp/tmpdqyv1aux/job_working_directory/000/3/working/./meme_input.fa",
+ "number of sequences":5,
"number of sites":566,
"partition count":1,
"trees":{
- "0":"(((((CHICKEN_HEBEI_326_2005:0.02100885319673648,(SWINE_ANHUI_1_2004:0.007702393698306516)Node7:0.002095219592954275)Node5:0.003887237703073042)Node4:0.003404921392531202,(((CHICKEN_HONGKONG_915_97:-1,(GOOSE_HONGKONG_W355_97:-1)Node13:0.002899766890966483)Node11:0.001306376767766534,HONGKONG_1_97_98:0.003844928589233716)Node10:0.000182535836694054,HONGKONG_1_538_97:-1)Node9:0.02096173714686362)Node3:0.003130608143291779,(((GOOSE_SHANTOU_2216_2005:0.006207842095177651)Node19:0.002530613798219486,PEREGRINEFALCON_HK_D0028_2004:0.003608296348267232)Node18:0.003288900909856382,CK_HK_WF157_2003:0.00663129750258774)Node17:0.004655295319725731)Node2:0.0116808817874948,(((HUMAN_VIETNAM_CL105_2005:0.006521522005742001)Node25:0.001967887030302483,HUMAN_VIETNAM_3062_2004:0.001641397323851184)Node24:0.0003125512332168847,MALLARD_VIETNAM_16_2003:0.003244216605281072)Node23:0.0004125980823087554,CHICKEN_CK_160_2005:0.006168335080088849)"
+ "0":"(((((CHICKEN_HEBEI_326_2005:0.02100885319673648,(SWINE_ANHUI_1_2004:0.007702393698306516)Node7:0.002095219592954275)Node5:0.003887237703073042)Node4:-1)Node3:0.003130608143291779,(CK_HK_WF157_2003:0.00663129750258774)Node9:0.004655295319725731)Node2:0.0116808817874948,(MALLARD_VIETNAM_16_2003:0.003244216605281072)Node11:0.0004125980823087554,CHICKEN_CK_160_2005:0.006168335080088849)"
}
},
"tested":{
"0":{
"CHICKEN_CK_160_2005":"test",
"CHICKEN_HEBEI_326_2005":"test",
- "CHICKEN_HONGKONG_915_97":"test",
"CK_HK_WF157_2003":"test",
- "GOOSE_HONGKONG_W355_97":"test",
- "GOOSE_SHANTOU_2216_2005":"test",
- "HONGKONG_1_538_97":"test",
- "HONGKONG_1_97_98":"test",
- "HUMAN_VIETNAM_3062_2004":"test",
- "HUMAN_VIETNAM_CL105_2005":"test",
"MALLARD_VIETNAM_16_2003":"test",
- "Node10":"test",
"Node11":"test",
- "Node13":"test",
- "Node17":"test",
- "Node18":"test",
- "Node19":"test",
"Node2":"test",
- "Node23":"test",
- "Node24":"test",
- "Node25":"test",
"Node3":"test",
"Node4":"test",
"Node5":"test",
"Node7":"test",
"Node9":"test",
- "PEREGRINEFALCON_HK_D0028_2004":"test",
"SWINE_ANHUI_1_2004":"test"
}
},
"timers":{
"MEME analysis":{
"order":2,
- "timer":249
+ "timer":437
},
"Model fitting":{
"order":1,
- "timer":2
+ "timer":4
},
"Total time":{
"order":0,
- "timer":252
+ "timer":442
}
}
}
\ No newline at end of file