Mercurial > repos > iuc > hyphy_gard

comparison hyphy_gard.xml @ 34:5b777002c2de draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit e7a89841d59689e87db592e112f9c8fb5331d954
author iuc
date Thu, 02 Mar 2023 15:16:52 +0000
parents 26834f8534f9
children
comparison
equal deleted inserted replaced
33:659517798cc4 34:5b777002c2de
1 <?xml version="1.0"?> 1 <tool id="hyphy_gard" name="HyPhy-GARD" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
2 <tool id="hyphy_gard" name="HyPhy-GARD" version="@TOOL_VERSION@+galaxy1" profile="19.09">
3 <description>Genetic Algorithm for Recombination Detection</description> 2 <description>Genetic Algorithm for Recombination Detection</description>
4 <macros> 3 <macros>
5 <import>macros.xml</import> 4 <import>macros.xml</import>
6 </macros> 5 </macros>
7 <expand macro="bio_tools"/> 6 <expand macro="bio_tools"/>
33 <option value="amino-acid">Amino acid</option> 32 <option value="amino-acid">Amino acid</option>
34 <option value="codon">Codon</option> 33 <option value="codon">Codon</option>
35 </param> 34 </param>
36 <when value="nucleotide"/> 35 <when value="nucleotide"/>
37 <when value="amino-acid"> 36 <when value="amino-acid">
38 <expand macro="substitution" /> 37 <expand macro="substitution" argument="--model" />
39 </when> 38 </when>
40 <when value="codon"> 39 <when value="codon">
41 <expand macro="gencode" /> 40 <expand macro="gencode" />
42 </when> 41 </when>
43 </conditional> 42 </conditional>
56 </when> 55 </when>
57 </conditional> 56 </conditional>
58 </inputs> 57 </inputs>
59 <outputs> 58 <outputs>
60 <data name="gard_output" format="nex" /> 59 <data name="gard_output" format="nex" />
61 <data name="translated" format="hyphy_results.json" /> 60 <data name="translated" format="hyphy_results.json" label="${tool.name} on ${on_string}: Translated" />
62 </outputs> 61 </outputs>
63 <tests> 62 <tests>
64 <test> 63 <test>
65 <param name="input_file" ftype="fasta" value="gard-in1.fa"/> 64 <param name="input_file" ftype="fasta" value="gard-in1.fa"/>
66 <output name="gard_output" file="gard-out1.nex" compare="sim_size"/> 65 <output name="gard_output" file="gard-out1.nex" compare="sim_size"/>