Mercurial > repos > iuc > hyphy_gard

comparison hyphy_gard.xml @ 2:728d5b0af60f draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit f14f2bae2b27dc04e574803c7d4442a64cfe43e4"
author iuc
date Fri, 14 Feb 2020 16:43:58 -0500
parents a03d87763f51
children bff9a82d630d
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1:a03d87763f51 2:728d5b0af60f
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool id="hyphy_gard" name="HyPhy-GARD" version="@VERSION@+galaxy0"> 2 <tool id="hyphy_gard" name="HyPhy-GARD" version="@VERSION@+galaxy1">
3 <description>Genetic Algorithm for Recombination Detection</description> 3 <description>Genetic Algorithm for Recombination Detection</description>
4 <macros> 4 <macros>
5 <import>macros.xml</import> 5 <import>macros.xml</import>
6 </macros> 6 </macros>
7 <expand macro="requirements"/> 7 <expand macro="requirements"/>
8 <command detect_errors="exit_code"><![CDATA[ 8 <command detect_errors="exit_code"><![CDATA[
9 ln -s '$input_file' gard_input.fa && 9 ln -s '$input_file' gard_input.fa &&
10 @HYPHY_INVOCATION@ gard 10 @HYPHYMPI@ gard
11 --alignment ./gard_input.fa 11 --alignment ./gard_input.fa
12 --type '$datatype.value' 12 --type '$datatype.value'
13 #if str($datatype.value) == 'Codon': 13 #if str($datatype.value) == 'Codon':
14 --code '$datatype.gencodeid' 14 --code '$datatype.gencodeid'
15 #elif str($datatype.value) == 'Protein': 15 #elif str($datatype.value) == 'Protein':