Mercurial > repos > iuc > hyphy_meme

annotate test-data/relax-out2-1.json @ 31:cdbb233119cb draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit e74f0c1ed183da674db365c3a6ce320b0c08d9bc"
author iuc
date Sat, 27 Nov 2021 11:26:48 +0000
parents e0763df98352
children 5d8389d684bf
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rev   line source
25
e0763df98352 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
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diff changeset
1 {
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2 "Synonymous site-posteriors": [
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iuc
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e0763df98352 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
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e0763df98352 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
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e0763df98352 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
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6 ],
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7 "analysis":0,
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8 "branch attributes":{
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9 "0":{
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10 "BABOON":{
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11 "General descriptive":0.001859093275691098,
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12 "MG94xREV with separate rates for branch sets":0.001728762656048212,
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13 "Nucleotide GTR":0.001680040630127455,
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14 "RELAX alternative":0.001429829115377586,
e0763df98352 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
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15 "RELAX null":0.00162000085935921,
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16 "RELAX partitioned descriptive":0.001425818785563505,
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17 "k (general descriptive)":0.09975999558426636,
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18 "original name":"BABOON"
e0763df98352 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
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19 },
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20 "CAT":{
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21 "General descriptive":0.3647017264253697,
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22 "MG94xREV with separate rates for branch sets":0.276093367337407,
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23 "Nucleotide GTR":0.2660909938917123,
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24 "RELAX alternative":0.3756323856089179,
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diff changeset
25 "RELAX null":0.3608767062015097,
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iuc
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diff changeset
26 "RELAX partitioned descriptive":0.3779196268605463,
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iuc
parents:
diff changeset
27 "k (general descriptive)":2.315896411158361,
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iuc
parents:
diff changeset
28 "original name":"CAT"
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iuc
parents:
diff changeset
29 },
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iuc
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diff changeset
30 "CHIMP":{
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iuc
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diff changeset
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iuc
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diff changeset
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iuc
parents:
diff changeset
33 "Nucleotide GTR":0.001818373670119325,
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iuc
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diff changeset
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iuc
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diff changeset
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iuc
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diff changeset
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iuc
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diff changeset
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iuc
parents:
diff changeset
38 "original name":"CHIMP"
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iuc
parents:
diff changeset
39 },
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iuc
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diff changeset
40 "COW":{
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iuc
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diff changeset
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diff changeset
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iuc
parents:
diff changeset
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iuc
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diff changeset
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iuc
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diff changeset
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iuc
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diff changeset
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iuc
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iuc
parents:
diff changeset
48 "original name":"COW"
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iuc
parents:
diff changeset
49 },
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iuc
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diff changeset
50 "HORSE":{
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diff changeset
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iuc
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diff changeset
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diff changeset
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iuc
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diff changeset
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iuc
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diff changeset
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iuc
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diff changeset
59 },
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iuc
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diff changeset
60 "HUMAN":{
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diff changeset
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diff changeset
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iuc
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diff changeset
63 "Nucleotide GTR":0,
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iuc
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iuc
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iuc
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diff changeset
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diff changeset
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iuc
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diff changeset
70 "MOUSE":{
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diff changeset
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diff changeset
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iuc
parents:
diff changeset
73 "Nucleotide GTR":0.1180171198334285,
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iuc
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iuc
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diff changeset
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iuc
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diff changeset
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iuc
parents:
diff changeset
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iuc
parents:
diff changeset
79 },
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iuc
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diff changeset
80 "Node1":{
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iuc
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diff changeset
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diff changeset
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iuc
parents:
diff changeset
83 "Nucleotide GTR":0.2767237570684924,
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iuc
parents:
diff changeset
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iuc
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diff changeset
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iuc
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diff changeset
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iuc
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diff changeset
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iuc
parents:
diff changeset
88 },
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iuc
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diff changeset
89 "Node12":{
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iuc
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diff changeset
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diff changeset
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iuc
parents:
diff changeset
92 "Nucleotide GTR":0.01784803874223016,
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iuc
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diff changeset
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iuc
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diff changeset
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iuc
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diff changeset
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iuc
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diff changeset
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iuc
parents:
diff changeset
97 },
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iuc
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diff changeset
98 "Node2":{
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iuc
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diff changeset
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iuc
parents:
diff changeset
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iuc
parents:
diff changeset
101 "Nucleotide GTR":0.06613162123865737,
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iuc
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diff changeset
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iuc
parents:
diff changeset
103 "RELAX null":0.06749468776339668,
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iuc
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diff changeset
104 "RELAX partitioned descriptive":0.063727560710161,
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iuc
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diff changeset
105 "k (general descriptive)":0.5375515816350908
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iuc
parents:
diff changeset
106 },
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iuc
parents:
diff changeset
107 "Node3":{
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iuc
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diff changeset
108 "General descriptive":0.1331109882486915,
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iuc
parents:
diff changeset
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iuc
parents:
diff changeset
110 "Nucleotide GTR":0.09886326330774685,
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diff changeset
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iuc
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diff changeset
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iuc
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diff changeset
113 "RELAX partitioned descriptive":0.1370056132243871,
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iuc
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diff changeset
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iuc
parents:
diff changeset
115 },
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diff changeset
116 "Node8":{
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diff changeset
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diff changeset
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iuc
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diff changeset
119 "Nucleotide GTR":0.106239268140425,
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diff changeset
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diff changeset
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diff changeset
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iuc
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diff changeset
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iuc
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diff changeset
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diff changeset
125 "Node9":{
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diff changeset
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diff changeset
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iuc
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diff changeset
128 "Nucleotide GTR":0.02566573875750134,
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iuc
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diff changeset
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iuc
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diff changeset
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iuc
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diff changeset
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iuc
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diff changeset
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diff changeset
133 },
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diff changeset
134 "PIG":{
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iuc
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diff changeset
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iuc
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diff changeset
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iuc
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diff changeset
137 "Nucleotide GTR":0.1871893456388788,
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iuc
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diff changeset
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iuc
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diff changeset
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iuc
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diff changeset
140 "RELAX partitioned descriptive":0.251294309938668,
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iuc
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diff changeset
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iuc
parents:
diff changeset
142 "original name":"PIG"
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iuc
parents:
diff changeset
143 },
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iuc
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diff changeset
144 "RAT":{
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iuc
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diff changeset
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iuc
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diff changeset
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iuc
parents:
diff changeset
147 "Nucleotide GTR":0.06661283005976348,
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iuc
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diff changeset
148 "RELAX alternative":0.07293805936494982,
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iuc
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diff changeset
149 "RELAX null":0.07115038941652747,
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iuc
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diff changeset
150 "RELAX partitioned descriptive":0.07467247582140474,
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iuc
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diff changeset
151 "k (general descriptive)":1.319839560623237,
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iuc
parents:
diff changeset
152 "original name":"RAT"
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iuc
parents:
diff changeset
153 },
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iuc
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diff changeset
154 "RHMONKEY":{
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iuc
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diff changeset
155 "General descriptive":0.003674114425886965,
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iuc
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diff changeset
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iuc
parents:
diff changeset
157 "Nucleotide GTR":0.003775170135617877,
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iuc
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diff changeset
158 "RELAX alternative":0.004180662465434332,
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iuc
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diff changeset
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iuc
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diff changeset
160 "RELAX partitioned descriptive":0.004190519057865823,
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iuc
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diff changeset
161 "k (general descriptive)":5.183560186695944,
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iuc
parents:
diff changeset
162 "original name":"RHMONKEY"
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iuc
parents:
diff changeset
163 }
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iuc
parents:
diff changeset
164 },
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iuc
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diff changeset
165 "attributes":{
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iuc
parents:
diff changeset
166 "General descriptive":{
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diff changeset
167 "attribute type":"branch length",
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iuc
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diff changeset
168 "display order":4
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iuc
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diff changeset
169 },
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diff changeset
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diff changeset
171 "attribute type":"branch length",
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diff changeset
172 "display order":1
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iuc
parents:
diff changeset
173 },
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iuc
parents:
diff changeset
174 "Nucleotide GTR":{
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diff changeset
175 "attribute type":"branch length",
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diff changeset
176 "display order":0
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parents:
diff changeset
177 },
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iuc
parents:
diff changeset
178 "RELAX alternative":{
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diff changeset
179 "attribute type":"branch length",
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diff changeset
180 "display order":2
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diff changeset
181 },
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diff changeset
182 "RELAX null":{
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diff changeset
183 "attribute type":"branch length",
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diff changeset
184 "display order":3
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parents:
diff changeset
185 },
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diff changeset
186 "RELAX partitioned descriptive":{
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diff changeset
187 "attribute type":"branch length",
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diff changeset
188 "display order":5
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parents:
diff changeset
189 },
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iuc
parents:
diff changeset
190 "k (general descriptive)":{
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diff changeset
191 "attribute type":"branch label",
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diff changeset
192 "display order":4
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parents:
diff changeset
193 },
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iuc
parents:
diff changeset
194 "original name":{
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diff changeset
195 "attribute type":"node label",
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diff changeset
196 "display order":-1
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iuc
parents:
diff changeset
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diff changeset
199 },
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diff changeset
200 "data partitions":{
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201 "0":{
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diff changeset
202 "coverage": [
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diff changeset
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diff changeset
204 ],
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diff changeset
205 "name":"relax.filter.default"
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diff changeset
206 }
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diff changeset
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diff changeset
208 "fits":{
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diff changeset
209 "General descriptive":{
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diff changeset
210 "AIC-c":6945.891070751259,
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diff changeset
211 "Log Likelihood":-3420.486789501042,
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diff changeset
212 "Rate Distributions":{
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diff changeset
213 "Shared":{
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diff changeset
214 "0":{
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diff changeset
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diff changeset
216 "proportion":0.00789425874100967
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diff changeset
218 "1":{
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diff changeset
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diff changeset
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diff changeset
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diff changeset
222 "2":{
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diff changeset
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224 "proportion":0.4539853825661836
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diff changeset
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diff changeset
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diff changeset
228 "display order":4,
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diff changeset
229 "estimated parameters":51
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diff changeset
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diff changeset
231 "MG94xREV with separate rates for branch sets":{
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diff changeset
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diff changeset
233 "Equilibrium frequencies": [
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diff changeset
282 [0.01965132601881859],
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iuc
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diff changeset
283 [0.02049322866376102],
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iuc
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diff changeset
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iuc
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diff changeset
285 [0.007295949736387736],
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iuc
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diff changeset
286 [0.009068296583349953],
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iuc
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diff changeset
287 [0.007608523013862737],
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iuc
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diff changeset
288 [0.007628698224327205],
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iuc
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diff changeset
289 [0.009481877006094248],
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iuc
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diff changeset
290 [0.00795552712159237],
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iuc
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diff changeset
291 [0.01396413011303752],
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iuc
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diff changeset
292 [0.01140428846505027],
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iuc
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diff changeset
293 [0.01417464125436193],
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iuc
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diff changeset
294 [0.01189287130232129]
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iuc
parents:
diff changeset
295 ],
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iuc
parents:
diff changeset
296 "Log Likelihood":-3461.064480792223,
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iuc
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diff changeset
297 "Rate Distributions":{
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iuc
parents:
diff changeset
298 "non-synonymous/synonymous rate ratio for *Reference*": [
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iuc
parents:
diff changeset
299 [1.240656122625563, 1]
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iuc
parents:
diff changeset
300 ],
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iuc
parents:
diff changeset
301 "non-synonymous/synonymous rate ratio for *Test*": [
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iuc
parents:
diff changeset
302 [0.5611761689874598, 1]
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iuc
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diff changeset
303 ]
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iuc
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diff changeset
304 },
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iuc
parents:
diff changeset
305 "display order":1,
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iuc
parents:
diff changeset
306 "estimated parameters":32
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iuc
parents:
diff changeset
307 },
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iuc
parents:
diff changeset
308 "Nucleotide GTR":{
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iuc
parents:
diff changeset
309 "AIC-c":7112.857310169033,
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iuc
parents:
diff changeset
310 "Equilibrium frequencies": [
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iuc
parents:
diff changeset
311 [0.3592490842490842],
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iuc
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diff changeset
312 [0.181959706959707],
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iuc
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diff changeset
313 [0.240018315018315],
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iuc
parents:
diff changeset
314 [0.2187728937728937]
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iuc
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diff changeset
315 ],
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iuc
parents:
diff changeset
316 "Log Likelihood":-3532.32122446679,
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iuc
parents:
diff changeset
317 "Rate Distributions":{
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iuc
parents:
diff changeset
318 "Substitution rate from nucleotide A to nucleotide C":0.5501644800943087,
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iuc
parents:
diff changeset
319 "Substitution rate from nucleotide A to nucleotide G":1,
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iuc
parents:
diff changeset
320 "Substitution rate from nucleotide A to nucleotide T":0.2647746107611847,
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iuc
parents:
diff changeset
321 "Substitution rate from nucleotide C to nucleotide G":0.4917423221832032,
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iuc
parents:
diff changeset
322 "Substitution rate from nucleotide C to nucleotide T":1.02837595903795,
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iuc
parents:
diff changeset
323 "Substitution rate from nucleotide G to nucleotide T":0.304509117524575
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iuc
parents:
diff changeset
324 },
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iuc
parents:
diff changeset
325 "display order":0,
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iuc
parents:
diff changeset
326 "estimated parameters":24
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iuc
parents:
diff changeset
327 },
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iuc
parents:
diff changeset
328 "RELAX alternative":{
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iuc
parents:
diff changeset
329 "AIC-c":6901.392449196474,
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iuc
parents:
diff changeset
330 "Log Likelihood":-3408.754211469135,
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iuc
parents:
diff changeset
331 "Rate Distributions":{
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iuc
parents:
diff changeset
332 "Reference":{
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iuc
parents:
diff changeset
333 "0":{
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iuc
parents:
diff changeset
334 "omega":0,
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iuc
parents:
diff changeset
335 "proportion":0.3814061972635792
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iuc
parents:
diff changeset
336 },
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iuc
parents:
diff changeset
337 "1":{
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iuc
parents:
diff changeset
338 "omega":0.4330262245823013,
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iuc
parents:
diff changeset
339 "proportion":0
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iuc
parents:
diff changeset
340 },
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iuc
parents:
diff changeset
341 "2":{
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iuc
parents:
diff changeset
342 "omega":2.405594515133199,
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iuc
parents:
diff changeset
343 "proportion":0.6185938027364208
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iuc
parents:
diff changeset
344 }
e0763df98352 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
345 },
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iuc
parents:
diff changeset
346 "Synonymous site-to-site rates":{
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iuc
parents:
diff changeset
347 "0":{
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iuc
parents:
diff changeset
348 "proportion":0.2800901562602482,
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iuc
parents:
diff changeset
349 "rate":0.2837970682663188
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iuc
parents:
diff changeset
350 },
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iuc
parents:
diff changeset
351 "1":{
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iuc
parents:
diff changeset
352 "proportion":0.6272754947629234,
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iuc
parents:
diff changeset
353 "rate":0.9947075941569237
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iuc
parents:
diff changeset
354 },
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iuc
parents:
diff changeset
355 "2":{
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iuc
parents:
diff changeset
356 "proportion":0.09263434897682828,
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iuc
parents:
diff changeset
357 "rate":3.20135608237551
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iuc
parents:
diff changeset
358 }
e0763df98352 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
359 },
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iuc
parents:
diff changeset
360 "Test":{
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iuc
parents:
diff changeset
361 "0":{
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iuc
parents:
diff changeset
362 "omega":0,
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iuc
parents:
diff changeset
363 "proportion":0.3814061972635792
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iuc
parents:
diff changeset
364 },
e0763df98352 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
365 "1":{
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iuc
parents:
diff changeset
366 "omega":0.9999750044281671,
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iuc
parents:
diff changeset
367 "proportion":0
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iuc
parents:
diff changeset
368 },
e0763df98352 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
369 "2":{
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iuc
parents:
diff changeset
370 "omega":1.00002621592498,
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iuc
parents:
diff changeset
371 "proportion":0.6185938027364208
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diff changeset
372 }
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iuc
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diff changeset
373 }
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iuc
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diff changeset
374 },
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diff changeset
375 "display order":2,
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iuc
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diff changeset
376 "estimated parameters":41
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iuc
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diff changeset
377 },
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iuc
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diff changeset
378 "RELAX null":{
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iuc
parents:
diff changeset
379 "AIC-c":6910.777215627525,
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iuc
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diff changeset
380 "Log Likelihood":-3414.491942969586,
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iuc
parents:
diff changeset
381 "Rate Distributions":{
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iuc
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diff changeset
382 "Reference":{
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iuc
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diff changeset
383 "0":{
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iuc
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diff changeset
384 "omega":0,
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iuc
parents:
diff changeset
385 "proportion":0.04600287725570656
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iuc
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diff changeset
386 },
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iuc
parents:
diff changeset
387 "1":{
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iuc
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diff changeset
388 "omega":0,
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iuc
parents:
diff changeset
389 "proportion":0.3432466763494891
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iuc
parents:
diff changeset
390 },
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iuc
parents:
diff changeset
391 "2":{
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iuc
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diff changeset
392 "omega":1.896477292815783,
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iuc
parents:
diff changeset
393 "proportion":0.6107504463948045
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iuc
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diff changeset
394 }
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iuc
parents:
diff changeset
395 },
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iuc
parents:
diff changeset
396 "Synonymous site-to-site rates":{
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iuc
parents:
diff changeset
397 "0":{
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iuc
parents:
diff changeset
398 "proportion":0.2641095265325168,
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iuc
parents:
diff changeset
399 "rate":0.2744837794048847
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iuc
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diff changeset
400 },
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iuc
parents:
diff changeset
401 "1":{
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iuc
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diff changeset
402 "proportion":0.6330324513232739,
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iuc
parents:
diff changeset
403 "rate":0.9729462345446451
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iuc
parents:
diff changeset
404 },
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iuc
parents:
diff changeset
405 "2":{
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iuc
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diff changeset
406 "proportion":0.1028580221442092,
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iuc
parents:
diff changeset
407 "rate":3.029415427453047
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iuc
parents:
diff changeset
408 }
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iuc
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diff changeset
409 },
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iuc
parents:
diff changeset
410 "Test":{
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iuc
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diff changeset
411 "0":{
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iuc
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diff changeset
412 "omega":0,
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iuc
parents:
diff changeset
413 "proportion":0.04600287725570656
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iuc
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diff changeset
414 },
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iuc
parents:
diff changeset
415 "1":{
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iuc
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diff changeset
416 "omega":0,
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iuc
parents:
diff changeset
417 "proportion":0.3432466763494891
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iuc
parents:
diff changeset
418 },
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iuc
parents:
diff changeset
419 "2":{
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iuc
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diff changeset
420 "omega":1.896477292815783,
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iuc
parents:
diff changeset
421 "proportion":0.6107504463948045
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iuc
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diff changeset
422 }
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iuc
parents:
diff changeset
423 }
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iuc
parents:
diff changeset
424 },
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iuc
parents:
diff changeset
425 "display order":3,
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iuc
parents:
diff changeset
426 "estimated parameters":40
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iuc
parents:
diff changeset
427 },
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iuc
parents:
diff changeset
428 "RELAX partitioned descriptive":{
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iuc
parents:
diff changeset
429 "AIC-c":6909.42794543134,
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iuc
parents:
diff changeset
430 "Log Likelihood":-3408.579104294618,
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iuc
parents:
diff changeset
431 "Rate Distributions":{
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iuc
parents:
diff changeset
432 "Reference":{
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iuc
parents:
diff changeset
433 "0":{
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iuc
parents:
diff changeset
434 "omega":0.05035684771569529,
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iuc
parents:
diff changeset
435 "proportion":0.3805224005150026
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iuc
parents:
diff changeset
436 },
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iuc
parents:
diff changeset
437 "1":{
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iuc
parents:
diff changeset
438 "omega":0.07013486723985318,
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iuc
parents:
diff changeset
439 "proportion":0.003462124163764896
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iuc
parents:
diff changeset
440 },
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iuc
parents:
diff changeset
441 "2":{
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iuc
parents:
diff changeset
442 "omega":2.344944921144001,
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iuc
parents:
diff changeset
443 "proportion":0.6160154753212325
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iuc
parents:
diff changeset
444 }
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iuc
parents:
diff changeset
445 },
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iuc
parents:
diff changeset
446 "Test":{
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iuc
parents:
diff changeset
447 "0":{
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iuc
parents:
diff changeset
448 "omega":0,
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iuc
parents:
diff changeset
449 "proportion":0.03160127773820932
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iuc
parents:
diff changeset
450 },
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iuc
parents:
diff changeset
451 "1":{
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iuc
parents:
diff changeset
452 "omega":0,
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iuc
parents:
diff changeset
453 "proportion":0.4079248249859382
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iuc
parents:
diff changeset
454 },
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iuc
parents:
diff changeset
455 "2":{
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iuc
parents:
diff changeset
456 "omega":1.11269394570475,
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iuc
parents:
diff changeset
457 "proportion":0.5604738972758525
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iuc
parents:
diff changeset
458 }
e0763df98352 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
459 }
e0763df98352 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
460 },
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iuc
parents:
diff changeset
461 "display order":5,
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iuc
parents:
diff changeset
462 "estimated parameters":45
e0763df98352 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
463 }
e0763df98352 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
464 },
e0763df98352 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
465 "input":{
e0763df98352 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
466 "file name":"/tmp/tmpbauyxvdv/job_working_directory/000/5/working/./input.nex",
e0763df98352 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
467 "number of sequences":10,
e0763df98352 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
468 "number of sites":187,
e0763df98352 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
469 "partition count":1,
e0763df98352 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
470 "trees":{
e0763df98352 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
471 "0":"((((PIG:0.147969,COW:0.21343)Node3:0.08509899999999999,HORSE:0.165787,CAT:0.264806)Node2:0.058611,((RHMONKEY:0.002015,BABOON:0.003108)Node9:0.022733,(HUMAN:0.004349,CHIMP:0.000799)Node12:0.011873)Node8:0.101856)Node1:0.340802,RAT:0.050958,MOUSE:0.09795)"
e0763df98352 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
472 }
e0763df98352 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
473 },
e0763df98352 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
474 "test results":{
e0763df98352 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
475 "LRT":11.47546300090198,
e0763df98352 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
476 "p-value":0.0007052107640865835,
e0763df98352 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
477 "relaxation or intensification parameter":2.986519568748539e-05
e0763df98352 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
478 },
e0763df98352 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
479 "tested":{
e0763df98352 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
480 "0":{
e0763df98352 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
481 "BABOON":"Test",
e0763df98352 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
482 "CAT":"Reference",
e0763df98352 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
483 "CHIMP":"Test",
e0763df98352 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
484 "COW":"Reference",
e0763df98352 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
485 "HORSE":"Reference",
e0763df98352 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
486 "HUMAN":"Test",
e0763df98352 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
487 "MOUSE":"Reference",
e0763df98352 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
488 "Node1":"Test",
e0763df98352 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
489 "Node12":"Test",
e0763df98352 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
490 "Node2":"Reference",
e0763df98352 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
491 "Node3":"Reference",
e0763df98352 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
492 "Node8":"Test",
e0763df98352 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
493 "Node9":"Test",
e0763df98352 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
494 "PIG":"Reference",
e0763df98352 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
495 "RAT":"Reference",
e0763df98352 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
496 "RHMONKEY":"Test"
e0763df98352 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
497 }
e0763df98352 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
498 },
e0763df98352 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
499 "timers":{
e0763df98352 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
500 "General descriptive model fitting":{
e0763df98352 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
501 "order":2,
e0763df98352 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
502 "timer":127
e0763df98352 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
503 },
e0763df98352 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
504 "Overall":{
e0763df98352 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
505 "order":0,
e0763df98352 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
506 "timer":645
e0763df98352 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
507 },
e0763df98352 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
508 "Preliminary model fitting":{
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iuc
parents:
diff changeset
509 "order":1,
e0763df98352 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
510 "timer":8
e0763df98352 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
511 },
e0763df98352 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
512 "RELAX alternative model fitting":{
e0763df98352 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
513 "order":3,
e0763df98352 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
514 "timer":178
e0763df98352 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
515 },
e0763df98352 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
516 "RELAX null model fitting":{
e0763df98352 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
517 "order":4,
e0763df98352 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
518 "timer":115
e0763df98352 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
519 },
e0763df98352 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
520 "RELAX partitioned descriptive":{
e0763df98352 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
521 "order":5,
e0763df98352 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
522 "timer":216
e0763df98352 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
523 }
e0763df98352 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
524 }
e0763df98352 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents:
diff changeset
525 }