Mercurial > repos > iuc > hyphy_meme
diff test-data/busted-out2-1.json @ 31:cdbb233119cb draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit e74f0c1ed183da674db365c3a6ce320b0c08d9bc"
author | iuc |
---|---|
date | Sat, 27 Nov 2021 11:26:48 +0000 |
parents | e0763df98352 |
children |
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--- a/test-data/busted-out2-1.json Tue Oct 05 05:04:06 2021 +0000 +++ b/test-data/busted-out2-1.json Sat Nov 27 11:26:48 2021 +0000 @@ -1,21 +1,21 @@ { "Evidence Ratios":{ "constrained": [ -[0.935557169656361, 0.9478485707814517, 0.9365713272643597, 0.9348516866501475, 0.9478485707814517, 0.9470782825238451, 0.9404255507056813, 0.9445269614625446, 0.9357171171944089, 0.9445269614625446, 0.951038343352286, 0.9642191069363555, 0.9509681609268663, 0.9357171171944089, 0.9365508162861411, 0.9330337048596494, 0.9453769311406178, 0.9354507653189286, 0.9357171171944089, 0.951038343352286, 0.944959794342383, 0.951038343352286, 0.9554450473318812, 0.957741198595587, 0.9357223141306646, 0.9635859922205572, 0.9400812190552175, 0.9471227276423632, 0.9471155585144405, 0.951038343352286, 0.9425085292914046, 0.951038343352286, 0.9382075921692818, 0.9681439336221066, 9.055411306947674, 0.9467899324264936, 0.9478485707814517, 0.9398061397692539, 1.097085569751409, 1.371682580705311, 1.704754646360477, 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*background*": [ +[0.2379324068936849, 1] + ], "non-synonymous/synonymous rate ratio for *test*": [ -[0.231720664913378, 1] +[0.1777604776475358, 1] ] }, "display order":1, - "estimated parameters":28 + "estimated parameters":29 }, "Nucleotide GTR":{ "AIC-c":6683.094244259512, @@ -265,30 +282,44 @@ "estimated parameters":21 }, "Unconstrained model":{ - "AIC-c":6391.938375474656, - "Log Likelihood":-3163.666348620609, + "AIC-c":6400.149223170942, + "Log Likelihood":-3162.670820660715, "Rate Distributions":{ + "Background":{ + "0":{ + "omega":0.1679188282558003, + "proportion":0.8207520434237199 + }, + "1":{ + "omega":0.2120937673953722, + "proportion":0.1693698006934513 + }, + "2":{ + "omega":13.84252711122189, + "proportion":0.00987815588282877 + } + }, "Test":{ "0":{ - "omega":0.1490485393860332, - "proportion":0.02658974082564446 + "omega":0.08367159828032572, + "proportion":0.9533274940567786 }, "1":{ - "omega":0.169565784922581, - "proportion":0.9641001770967245 + 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