Mercurial > repos > iuc > hyphy_meme
changeset 5:4d5768ad6316 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 8d5ae1d04c43988fdcc458f4f08376a15e72db8e"
| author | iuc |
|---|---|
| date | Thu, 20 Feb 2020 18:11:41 -0500 |
| parents | 8366d5b28b49 |
| children | 2c0308ac90e1 |
| files | hyphy_meme.xml macros.xml test-data/gard-in1.fa test-data/gard-out1.nex test-data/meme-in1.fa test-data/meme-in1.nhx test-data/meme-out1.json |
| diffstat | 7 files changed, 1074 insertions(+), 5334 deletions(-) [+] |
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--- a/hyphy_meme.xml Mon Feb 17 14:53:45 2020 -0500 +++ b/hyphy_meme.xml Thu Feb 20 18:11:41 2020 -0500 @@ -37,11 +37,86 @@ </test> </tests> <help><![CDATA[ -MEME employs a mixed-effects maximum likelihood approach to test the hypothesis that individual sites have been subject to episodic positive or diversifying selection. In other words, MEME aims to detect sites evolving under positive selection under a proportion of branches. +MEME: Mixed Effects Model of Evolution +====================================== + +What question does this method answer? +-------------------------------------- + +Which site(s) in a gene are subject to pervasive or *episodic*, i.e. only on a +single lineage or subset of lineages, diversifying selection? + +Recommended Applications +------------------------ + +The phenomenon of pervasive selection is generally most prevalent in pathogen evolution and any biological system influenced by evolutionary arms race dynamics +(or balancing selection), including adaptive immune escape by viruses. +MEME is ideally suited to identify sites under positive selection which +represent candidate sites subject to strong selective pressures across the entire phylogeny or only on parts of the phylogeny. + +MEME is the sole method in HyPhy for detecting selection at individual sites that considers both pervasive and episodic selection. +MEME is therefore our recommended method if maximum power is desired. + + +Brief description +----------------- + +MEME (Mixed Effects Model of Evolution) estimates a site-wise synonymous +(alpha) and a two-category mixture of non-synonymous (beta-, with +proportion p-, and beta+ with proportion [1-p-]) rates, and uses a +likelihood ratio test to determine if beta+ > α at a site. The +estimates aggregate information over a proportion of branches at a site, +so the signal is derived from episodic diversification, which is a +combination of strength of selection [effect size] and the proportion of +the tree affected. A subset of branches can be selected for testing as +well, in which case an additional (nuisance) parameter will be inferred +-- the non-synonymous rate on branches NOT selected for testing. + +Input +----- -See the online documentation_ for more information. +1. A *FASTA* sequence alignment. +2. A phylogenetic tree in the *Newick* format + +Note: the names of sequences in the alignment must match the names of the sequences in the tree. + + +Output +------ + +A JSON file with analysis results (http://hyphy.org/resources/json-fields.pdf). + +A custom visualization module for viewing these results is available (see http://vision.hyphy.org/MEME for an example) + +Further reading +--------------- + +http://hyphy.org/methods/selection-methods/#MEME + -.. _documentation: http://hyphy.org/methods/selection-methods/#meme +Tool options +------------ +:: + + + --code Which genetic code to use + + --branches Which branches should be tested for selection? + All [default] : test all branches + + Internal : test only internal branches (suitable for + intra-host pathogen evolution for example, where terminal branches + may contain polymorphism data) + + Leaves: test only terminal (leaf) branches + + Unlabeled: if the Newick string is labeled using the {} notation, + test only branches without explicit labels + (see http://hyphy.org/tutorials/phylotree/) + + --pvalue The significance level used to determine significance + + ]]></help> <expand macro="citations"> <citation type="doi">10.1371/journal.pgen.1002764</citation>
--- a/macros.xml Mon Feb 17 14:53:45 2020 -0500 +++ b/macros.xml Thu Feb 20 18:11:41 2020 -0500 @@ -6,6 +6,8 @@ </xml> <xml name="substitution"> <param name="model" type="select" label="Substitution model"> + <option value="GTR">GTR - General time reversible + model</option> <option value="LG">LG - Generalist empirical model from Le and Gascuel (2008)</option> <option value="HIVBm">HIVBm - Specialist empirical model @@ -26,10 +28,43 @@ for invertebrate mitochondrial genomes</option> <option value="gcpREV">gcpREV - Specialist empirical model for green plant chloroplast genomes</option> - <option value="GTR">GTR - General time reversible - model</option> </param> </xml> + + <xml name="conditional_posteriorEstimationMethod"> + <conditional name="posteriorEstimationMethod"> + <param argument="--method" type="select" label="Posterior estimation method"> + <option value="Variational-Bayes">0-th order Variational Bayes approximation</option> + <option value="Metropolis-Hastings">Full Metropolis-Hastings MCMC algorithm</option> + <option value="Collapsed-Gibbs">Collapsed Gibbs sampler</option> + </param> + <when value="Variational-Bayes"> + </when> + <when value="Metropolis-Hastings"> + <expand macro="mcmc_options" /> + </when> + <when value="Collapsed-Gibbs"> + <expand macro="mcmc_options" /> + </when> + </conditional> + </xml> + + <token name="@posteriorEstimationMethod_cmd@"> + #if $posteriorEstimationMethod.method != "Variational-Bayes" + --chains '$posteriorEstimationMethod.chains' + --chain-length '$posteriorEstimationMethod.chain_length' + --burn-in '$posteriorEstimationMethod.samples' + --samples '$posteriorEstimationMethod.samples_per_chain' + #end if + </token> + + <xml name="mcmc_options"> + <param argument="--chains" type="integer" value="5" min="2" max="20" label="Number of MCMC chains" /> + <param argument="--chain-length" name="chain_length" type="integer" value="2000000" min="500000" max="50000000" label="Length of each chain" /> + <param argument="--burn-in" name="samples" type="integer" value="1000000" min="100000" max="1900000" label="Samples to use for burn-in" /> + <param argument="--samples" name="samples_per_chain" type="integer" value="100" min="50" max="1000000" label="Samples to draw from each chain" /> + </xml> + <xml name="gencode"> <param name="gencodeid" type="select" label="Genetic code"> <option value="Universal">Universal code</option> @@ -62,27 +97,28 @@ <option value="All">All branches</option> <option value="Internal">Internal branches</option> <option value="Leaves">Leaf branches</option> - <option value="'Unlabeled-branches'">Unlabeled - branches</option> + <option value="'Unlabeled-branches'">Unlabeled branches</option> </param> </xml> <xml name="citations"> <citations> - <citation type="doi">10.1093/bioinformatics/bti079</citation> + <citation type="doi">10.1093/molbev/msz197</citation> <yield/> </citations> </xml> - <token name="@VERSION@">2.5.3</token> + <token name="@VERSION@">2.5.4</token> <xml name="requirements"> <requirements> - <requirement type="package" version="@VERSION@"> - hyphy</requirement> + <requirement type="package" version="@VERSION@">hyphy</requirement> <yield/> </requirements> </xml> <token name="@HYPHYMPI@">\${GALAXY_MPIRUN:-mpirun -np \${GALAXY_SLOTS:-1}} HYPHYMPI</token> - <token name="@HYPHY_ENVIRONMENT@"><![CDATA[export HYPHY=`which hyphy` && -export HYPHY_PATH=`dirname \$HYPHY` && -export HYPHY_LIB=`readlink -f \$HYPHY_PATH/../lib/hyphy` &&]]></token> - <token name="@HYPHY_INVOCATION@"><![CDATA[@HYPHY_ENVIRONMENT@ hyphy LIBPATH=\$HYPHY_LIB ]]></token> + <token name="@HYPHY_ENVIRONMENT@"><![CDATA[ + export HYPHY=`which hyphy` && + export HYPHY_PATH=`dirname \$HYPHY` && + export HYPHY_LIB=`readlink -f \$HYPHY_PATH/../lib/hyphy` &&]]></token> + <token name="@HYPHY_INVOCATION@"><![CDATA[ + @HYPHY_ENVIRONMENT@ hyphy LIBPATH=\$HYPHY_LIB + ]]></token> </macros>
--- a/test-data/gard-in1.fa Mon Feb 17 14:53:45 2020 -0500 +++ b/test-data/gard-in1.fa Thu Feb 20 18:11:41 2020 -0500 @@ -1,735 +1,120 @@ ->TREESPARROW_HENAN_1_2004 -ATGGAGAAAATAGTGCTTCTTCGTGCAATGATCAATCTTGTTAAAAGTGA -TCAGATTGGCGTTGGTTACCATGCAGACTACTCGACAGAGCAGGGTGACA -CAATAATGGAAAAGAACGTTACTGTTACACATGCTCAAGACATATTGGAA -AAGACACACAACGGGAAGCTCTGCGACCTAGATGGAGTGAAGCCTCTAAT -TTTGAAAGATTGTAGTGTAGCTGGATGGCTCCTCGGAAACCCAATGTGTG -ACGAATTCATCAATGTGCCGGAGTGGTCTTACATAGTGGAGAAGGCCAGT -CCAGCCAATGACCTCTGTTACCCAGGGGATTTCAACGACTATGAAGAACT -GAAACACCTATTGAGCAGAATAAACCATTTTGAAAAAATTCAGATCATCC -CCAAAAGTTCTTGGTCCGATCATGAAGCCTCATCAGGGGTGAGCTCAGCA -TGTCCATACCTGGGGAAGCCCTCCTTTTTCAGAAATGTGGTATGGCTTAT -CAAAAAGAACAGTACATACCCAACAATAAAGAGGGGCTACAATAATACCA -ACCCAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCG -GCAGAGCAGATAAAGCTCTATCAAAACCCAACCACCTATATTTCCGTTGG -AACATCAACACTAAACCAGAGATTGGTACCAAAAATAGCTACTAGATCCA -AAGTAAATGGGCAAAGTGGAAGAATGGAGTTCTTCTGGACAATTTTAAAG -CCGAATGACGCTATCAACTTCGAGAGTAATGGAAATTTCATTGCTCCAGA -ATATGCATACCAAATTGTCAAGAAAGGGGACTCAGCAATTATGAAAAGTG -AATTGGAATATGGTAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCG -ATAAACTCTAGTATGCCATTCCACAACATACACCCTCTCACCATCGGGGA -ATGCCCCAAATATGTGAAATCAAACAGATTAGTCCTTGCGACAGGGCTCA -GAAATAGCCCTCAAAGAGAGAGAAGAAGAAAAAAGAGAGGACTATTTGGA -GCTATAGCAGGTTTTATAGAGGGAGGATGGCAGGGAATGGTAGATGGTTG -GTATGGGTACCACCATAGCAATGAGCAGGGGAGTGGATACGCTGCAGACA -AAGAATCCACTCAAAAAGCAATAGATGGAGTCACCAATAAGGTCAACTCG -ATCATTGACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAA -TAACTTAGAAAGGAGAATAGAAAATTTAAACAAGAAGATGGAGGACGGAT -TCCTAGATGTCTGGACTTATAATGCTGAACTTCTGGTTCTCATGGAAAAT -GAGAGAACTCTAGACTTTCATGACTCAAATGTCAAGAACCTTTACGAAAA -GGTCCGACTACAACTTAGGGATAATGCAAAGGAGCTGGGTAACGGTTGTT -TCGAGTTCTATCACAAATGTGATAATGAATGTATGGAAAGTGTAAAAAAC -GGAACGTATGACTACCCGCAGTATTCAGAAGAAGCAAGACTAAACAGAGA -GGAAATAAGTGGAGTAAAATTGGAATCAATAGGAACTTACCAAATACTGT -CAATTTATTCAACAGTGGCGAGTTCCCTAGCACTGGCAATCATGGTAGCT -GGTCTATCTTTATGGATGTGCTCCAATGGATCGTTACAATGCAGAATT ->HUMAN_VIETNAM_CL105_2005 -ATGGAGAAAATAGTGCTTCTTTTTGCGATAGTCAGTCTTGTTAAAAGTGA -TCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACA -CAATAATGGAAAAGAACGTTACTGTTACACATGCCCAAGACATACTGGAA -AAGACACACAACGGGAAGCTCTGCGATCTAGATGGAGTGAAGCCTCTAAT -TTTGAGAGATTGTAGTGTAGCTGGATGGCTACTCGGAAACCCAATGTGTG -ACGAATTCATCAATGTGCCGGAATGGTCTTACATAGTGGAGAAGGTCAAT -CCAGTCAATGACCTCTGTTACCCAGGGGTTTTCAATGACTATGAAGAATT -GAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCC -CCAAAAGTTCTTGGTCCAGTCATGAAGCCTCATTAGGGGTGAGCTCAGTA -TGTCCATACCAGGGAAAGTCCTCCTTTTTCAGAAATGTGGTATGGCTTAT -CAAAAAGAACAGTACATACCCAACAATAAAGAGGAGCTACAATAATACCA -ACCAAGAAGATCTTTTGGTAATATGGGGGATTCATCATCCTAATGATGCG -GCAGAGCAGATAAAGCTCTATCAAAACCCAACCACCTATATTTCCGTTGG -GACATCAACACTAAACCAGAGATTGGTACCAAGAATAGCTACTAGATCCA -AAGTAAACGGGCAAAGTGGGAGGATGGAGTTCTTCTGGACAATTTTAAAA -CCGAATGATGCAATCAACTTCGAGAGTAATGGAAATTTCATTGCTCCAGA -ATATGCATACAAGATTGTCAAGAAAGGGGACTCAACAATTATGAAAAGTG -AATTGGAATATGGTAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCG -ATAAACTCTAGTATGCCATTCCACAATATACACCCTCTCACCATCGGGGA -ATGCCCCAAATATGTGAAATCAAACAGATTAGTCCTTGCGACTGGGCTCA -GAAATAGCCCTCAAAAAGAGAGAAGAAGAAAAAAGAGAGGATTATTTGGA -GCTATAGCAGGTTTTATAGAGGGAGGATGGCAGGGAATGGTAGATGGTTG -GTATGGGTACCACCATAGCAATGAGCAGGGGAGTGGGTACGCTGCAGACA -AAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCG -ATCATTGACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAA -CAACTTAGAAAGGAGAATAGAGAATTTAAACAAGAAGATGGAAGACGGGT -TCCTAGATGTCTGGACTTATAATGCTGAACTTCTGGTTCTCATGGAAAAT -GAGAGAACTCTAGACTTTCATGACTCAAATGTCAAGAACCTTTACGACAA -GGTCCGACTACAGCTTAGGGATAATGCAAAGGAGCTGGGTAACGGTTGTT -TCGAGTTCTATCATAAATGTGATAATGAATGTATGGAAAGTGTAAGAAAC -GGAACGTATGACTACCCGCAGTATTCAGAAGAAGCAAGATTAAAAAGAGA -GGAAATAAGTGGAGTAAAATTGGAATCAATAGGAATTTACCAAATACTGT -CAATTTATTCTACAGTGGCGAGTTCCCTAGCACTGGCAATCATGATAGCT -GGTCTATCCTTATGGATGTGCTCCAATGGGTCGTTACAA--------- ->TREESPARROW_HENAN_4_2004 -ATGGAGAAAATAGTGCTTCTTCTTGCAATAGTCAGTCTTGTTAAAAGTGA -TCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACA -CAATAATGCAAAAGAACGTTACTGTTACACATGCCCAAGACATACTGGAA -AAGACACACAACGGGAAGCTCTGCGATCTAGATGGAGTGAAACCTCTAAT -TTTAAGAGATTGTAGTGTAGCTGGATGGCTCCTCGGAAACCCAATGTGTG -ACGAATTCATCAATGTGCCGGAATGGTCTTACATAGTGGAGAAGGCCAGT -CCAGCCAATGACCTCTGTTACCCAGGGGATTTCAACGACTATGAAGAACT -GAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCC -CCAAAAGTTCTTGGTCCGATCATGAAGCCTCATCAGGGGTGAGCTCAGCA -TGTCCATACCAGGGGAGTCCCTCCTTTTTCAGAAATGTGGTATGGCTTAT -CAAAAAGAACAGTGCATACCCAACAATAAAGAGGAGCTACAATAATACCA -ACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCG -GCAGAGCAGACAAAGCTCTATCAAAACCCAACCACCTATATTTCCGTTGG -AACATCAACACTAAACCAGAGATTGGTACCAAAAATAGCTACTAGATCCA -AAGTAAATGGGCAAAGTGGAAGAATGGAGTTCTTCTGGACAATTTTAAAG -CCGAATGACGCTATCAACTTCGAGAGTAATGGAAATTTCATTGCTCCAGA -ATATGCATACAAAATTGTCAAGAAAGGGGACTCAGCAATTATGAAAAGTG -AATTGGAATATGGTAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCG -ATAAACTCTAGTATGCCATTCCACAACATACACCCTCTCACCATCGGGGA -ATGCCCCAAATATGTGAAATCAAACAGATTAGTCCTTGCGACAGGGCTCA -GAAATAGCCCTCAAAGAGAGAGAAGAAGAAAAAAGAGAGGACTATTTGGA -GCTATAGCAGGTTTTATAGAGGGAGGATGGCAGGGAATGGTAGATGGTTG -GTATGGGTACCACCATAGCAATGAGCAGGGGAGTGGATACGCTGCAGACA -AAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCG -ATCATTGACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAA -TAACTTAGAAAGGAGAATAGAAAATTTAAACAAGAAGATGGAGGACGGAT -TCCTAGATGTCTGGACTTATAATGCTGAACTTCTGGTTCTCATGGAAAAT -GAGAGAACTCTAGACTTTCATGACTCAAATGTCAAGAACCTTTACGAAAA -GGTCCGACTACAACTTAGGGATAATGCAAAGGAGCTGGGTAACGGTTGTT -TCGAGTTCTATCACAAATGTGATAATGAATGTATGGAAAGTGTAAAAAAC -GGAACGTATGACTACCCGCAGTATTCAGAAGAAGCAAGACTAAACAGAGA -GGAAATAAGTGGAGTAAAATTGGAATCAATAGGAACTTACCAAATACTGT -CAATTTATTCAACAGTGGTGAGTTCCCTAGCACTGGCAATCATGGTAGCT -GGTCTATCTTTATGGATGTGCTCCAATGGATCGTTACAATGCAGAATT ->CHICKEN_HEBEI_326_2005 -ATGGAGAGAATAGTGCTTCTTCTTGCAATAATCGGTCTTGTTAAAAGTGA -TCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACA -CAATAATGGAAAAGAACGTTACTGTTACACATGCTCAAGACATACTGGAG -AAGACACACAACGGGAAGCTCTGCAACCCAGATGGAGTGAAGCCTCTAAT -TTTGAAAGATTGTAGTGTAGCTGGATGGCTCCTCGGAAACCCAATGTGTG -ACGAATTTATCAATGTGCCGGAATGGTCTTACATAGTGGAGAAGGCCAGT -CCAGCCAATGGCCTCTGTTACCCAGGGGATTTCAATGACTATGAAGAACT -GAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCC -CCAAAAGTTCTTGGTCCGATCATGGAGCCTCATCAGGGGTGAGCTCAGCA -TGTTCCTATCTGGGGAAGCCCTCCTTTTTCAGAAATGTGGTATGGCTTAT -CAAAAAGAATAATACATACCCACCAATAAAGGTGAGCTACAACAATACCA -ACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCCAATGATGAG -GCAGAGCAGATAAAGATCTATCAAAACCCAACCACCTATATTTCCGTTGG -AACATCAACACTAAACCAGAGATTGGTACCAAAAATAGCTACTAGATCCA -AAGTAAACGGGCAAAGTGGAAGAATGGAGTTCTTCTGGACAATTTTAAAG -CCGAATGATGCTATCAATTTCGATAGTAATGGAAATTTCATTGCTCCAGA -ATATGCATACAAAATTGTCAAGAAAGGGGACTCAGCGATTATGAAAAGTG -AATTGGAATATGGCAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCG -ATAAATTCTAGTATGCCATTCCACAACATACACCCTCTCACCGTCGGGGA -ATGCCCCAAATATGTGAAATCAAACAGATTAGTCCTCGCGACTGGACTCA -GAAATGCCCCTCAAAGAGAGGGAGGAAGAAAAAAGAGAGGACTATTTGGA -GCCATAGCAGGGTTTATAGAGGGAGGATGGCAGGGAATGGTAGATGGTTG -GTATGGGTACCACCATAGCAATGAGCAGGGGAGTGGATACGCTGCAGACA -AAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCG -ATCATTGACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAA -TAACTTAGAAAGGAGAATAGAAAATTTAAACAAGAAGATGGAGGACGGAT -TCCTAGATGTCTGGACTTATAACGCTGAACTTCTGGTTCTCATGGAAAAT -GAGAGAACTCTAGACTTTCATGACTCAAATGTCAAGAACCTTTACGAAAA -GGTCCGACTACAGCTTAGGGATAATGCAAAGGAGCTGGGTAACGGTTGTT -TCGAGTTCTATCACAAATGTGATAATGAATGTATGGAAAGTGTAAAAAAC -GGAACGTATGACTACCCGCAGTATTCAGAAGAAGCAAGACTAAACAGAGA -GGAAATAAGTGGAGTAAAATTGGAATCAATGGGAACTTACCAAATACTGT -CAATTTATTCAACAGTGGCGAGTTCCCTAGCATTGGCAATCATGGTAGCT -GGTCTATCTTTATGGATGTGCTCCAATGGATCGTTACAATGCAGAATT ->CHICKEN_HONGKONG_915_97 -ATGGAGAAAATAGTGCTTCTTCTTGCAACAGTCAGTCTTGTTAAAAGTGA -TCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACA -CAATAATGGAAAAGAATGTTACTGTTACACATGCCCAAGACATACTGGAA -AGGACACACAACGGGAAGCTCTGCGATCTAAATGGAGTGAAACCTCTCAT -TTTGAGGGATTGTAGTGTAGCTGGATGGCTCCTCGGAAACCCTATGTGTG -ACGAATTCATCAATGTGCCGGAATGGTCTTACATAGTGGAGAAGGCCAGT -CCAGCCAATGACCTCTGTTATCCAGGGAATTTCAACGACTATGAAGAACT -GAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCC -CCAAAAGTTCTTGGTCCAATCATGATGCCTCATCAGGGGTGAGCTCAGCA -TGTCCATACCTTGGGAGGTCCTCCTTTTTCAGAAATGTGGTATGGCTTAT -CAAAAAGAACAGTGCATACCCAACAATAAAGAGGAGCTACAATAATACCA -ACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCG -GCAGAGCAGACAAAGCTCTATCAAAATCCAACCACCTACATTTCCGTTGG -AACATCAACACTGAACCAGAGATTGGTTCCAGAAATAGCTACTAGACCCA -AAGTAAACGGGCAAAGTGGAAGAATGGAGTTCTTCTGGACAATTTTAAAG -CCGAATGATGCCATCAATTTCGAGAGTAATGGAAATTTCATTGCCCCAGA -ATATGCATACAAAATTGTCAAGAAAGGGGACTCAACAATTATGAAAAGTG -AATTGGAATATGGTAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCG -ATAAACTCTAGTATGCCATTCCACAACATACACCCCCTCACCATCGGGGA -ATGCCCCAAATATGTGAAATCAAACAGATTAGTTCTTGCGACTGGACTCA -GAAATACCCCTCAAAGGGAGAGAAGAAGAAAAAAGAGAGGACTATTTGGA -GCTATAGCAGGTTTTATAGAGGGAGGATGGCAGGGCATGGTAGATGGTTG -GTATGGGTACCACCATAGCAATGAGCAGGGGAGTGGATACGCTGCAGACA -AAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCG -ATCATTAACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAA -TAACTTAGAAAGGAGAATAGAGAATTTAAACAAGAAAATGGAAGACGGAT -TCCTAGATGTCTGGACTTACAATGCTGAACTTCTGGTTCTCATGGAAAAT -GAGAGAACTCTCGACTTTCATGACTCAAATGTCAAGAACCTTTACGACAA -GGTCCGACTACAGCTTAGGGATAATGCAAAGGAACTGGGTAATGGTTGTT -TCGAATTCTATCACAAATGTGATAATGAATGTATGGAAAGTGTAAAAAAC -GGAACGTATGACTACCCGCAGTATTCAGAAGAAGCAAGACTAAACAGAGA -GGAAATAAGTGGAGTAAAATTGGAATCAATGGGAACTTACCAAATACTGT -CAATTTATTCAACAGTGGCGAGTTCCCTAGCACTGGCAATCATGGTAGCT -GGTCTATCTTTATGGATGTGCTCCAATGGATCGTTACAATGCAGAATT ->VIETNAM_3062_2004 -ATGGAGAAAATAGTGCTTCTTTTTGCAATAGTCAGTCTTGTTAAAAGTGA -TCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACA -CAATAATGGAAAAGAACGTTACTGTTACACATGCCCAAGACATACTGGAA -AAGACACACAACGGGAAGCTCTGCGATCTAGATGGAGTGAAGCCTCTAAT -TTTGAGAGATTGTAGTGTAGCTGGATGGCTCCTCGGAAACCCAATGTGTG -ACGAATTCATCAATGTGCCGGAATGGTCTTACATAGTGGAGAAGGCCAAT -CCAGTCAATGACCTCTGTTACCCAGGGGATTTCAATGACTATGAAGAATT -GAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCC -CCAAAAGTTCTTGGTCCAGTCATGAAGCCTCATTAGGAGTGAGCTCAGCA -TGTCCATACCAGGGAAAGTCCTCCTTTTTCAGAAATGTGGTATGGCTTAT -CAAAAAGAACAGTACATACCCAACAATAAAGAGGAGCTACAATAATACCA -ACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCG -GCAGAGCAGACAAAGCTCTATCAAAACCCAACCACCTATATTTCCGTTGG -GACATCAACACTAAACCAGAGGTTGGTACCAAGAATAGCTACTAGATCCA -AAGTAAACGGGCAAAGTGGAAGGATGGAGTTCTTCTGGACAATTTTAAAA -CCGAATGATGCAATCAACTTCGAGAGTAATGGAAATTTCATTGCTCCAGA -ATATGCATACAAAATTGTCAAGAAAGGGGACTCAACAATTATGAAAAGTG -AATTGGAATATGGTAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCG -ATAAACTCTAGTATGCCATTCCACAATATACACCCTCTCACCATCGGGGA -ATGCCCCAAATATGTGAAATCAAACAGATTAGTCCTTGCGACTGGGCTCA -GAAATAGCCCTCAAAGAGAGAGAAGAAGAAAAAAGAGAGGATTATTTGGA -GCTATAGCAGGTTTTATAGAGGGAGGATGGCAGGGAATGGTAGATGGTTG -GTATGGGTACCACCATAGCAATGAGCAGGGGAGTGGGTACGCTGCAGACA -AAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCG -ATCATTGACAAAATGAACACTCAATTTGAGGCCGTTGGAAGGGAATTTAA -CAACTTAGAAAGGAGAATAGAGAATTTAAACAAGAAGATGGAAGACGGGT -TCCTAGATGTCTGGACTTATAATGCTGAACTTCTGGTTCTCATGGAAAAT -GAGAGAACTCTAGACTTTCATGACTCAAATGTCAAGAACCTTTACGACAA -GGTCCGACTACAGCTTAGGGATAATGCAAAGGAGCTGGGTAACGGTTGTT -TCGAGTTCTATCATAAATGTGATAATGAATGTATGGAAAGTGTAAGAAAC -GGAACGTATGACTACCCGCAGTATTCAGAAGAAGCAAGACTAAAAAGAGA -GGAAATAAGTGGAGTAAAATTGGAATCAATAGGAATTTACCAAATACTGT -CAATTTATTCTACAGTGGCGAGTTCCCTAGCACTGGCAATCATGGTAGCT -GGTCTATCCTTATGGATGTGCTCCAATGGGTCG--------------- ->GOOSE_HONGKONG_W355_97 -ATGGAGAAAATAGTGCTTCTTCTTGCAACAGTCAGTCTTGTTAAAAGTGA -TCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACA -CAATAATGGAAAAGAATGTTACTGTTACACATGCCCAAGACATACTGGAA -AGGACACACAACGGGAAGCTCTGCGATCTAAATGGAGTGAAACCTCTCAT -TTTGAGGGATTGTAGTGTAGCTGGATGGCTCCTCGGAAACCCTATGTGTG -ACGAATTCATCAATGTGCCGGAATGGTCTTACATAGTGGAGAAGGCCAGT -CCAGCCAATGACCTCTGTTATCCAGGGAATTTCAACGACTATGAAGAACT -GAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCC -CCAAAAGTTCTTGGTCCAATCATGATGCCTCATCAGGGGTTAGCTCAGCA -TGTCCATACCTTGGGAGGTCCTCCTTTTTCAGAAATGTGGTATGGCTTAT -CAAAAAGAACAGTGCATACCCAACAATAAAGAGGAGCTACAATAATACCA -ACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCG -GCAGAGCAGACAAAGCTTTATCAAAATCCAACCACCTACATTTCCGTTGG -AACATCAACACTGAACCAGAGATTGGTTCCAGAAATAGCTACTAGACCCA -AAGTAAACGGGCAAAGTGGAAGAATGGAGTTCTTCTGGACAATTTTAAAG -CCGAATGATGCCATCAATTTCGAGAGTAATGGAAATTTCATTGCCCCAGA -ATATGCATACAAAATTGTCAAGAAAGGGGACTCAACAATTATGAAAAGTG -AATTGGAATATGGTAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCG -ATAAACTCTAGTATGCCATTCCACAACATACACCCCCTCACCATCGGGGA -ATGCCCCAAATATGTGAAATCAAACAGATTAGTTCTTGCGACTGGACTCA -GAAATACCCCTCAAAGGGAGAGAAGAAGAAAAAAGAGAGGACTATTTGGA -GCTATAGCAGGTTTTATAGAGGGAGGATGGCAGGGCATGGTAGATGGTTG -GTATGGGTACCACCATAGCAATGAGCAGGGGAGTGGATACGCTGCAGACA -AAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCG -ATCATTAACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAA -TAACTTAGAAAGGAGAATAGAGAATTTAAACAAGAAAATGGAAGACGGAT -TCCTAGATGTCTGGACTTACAATGCTGAACTTCTGGTTCTCATGGAAAAT -GAGAGAACTCTCGACTTTCATGACTCAAATGTCAAGAACCTTTACGACAA -GGTCCGACTACAGCTTAGGGATAATGCAAAGGAACTGGGTAATGGTTGTT -TCGAATTCTATCACAAATGTGATAATGAATGTATGGAAAGTGTAAGAAAC -GGAACGTATGACTACCCGCAGTATTCAGAAGAAGCAAGACTAAACAGAGA -GGAAATAAGTGGAGTAAAATTGGAATCAATGGGAACTTACCAAATACTGT -CAATTTATTCAACAGTGGCGAGTTCCCTAGCACTGGCAATCATGGTAGCT -GGTCTATCTTTATGGATGTGCTCCAATGGATCGTTACAATGCAGAATT ->DUCK_HONGKONG_Y283_97 -ATGGAGAAAATAGTGCTTCTTCTTGCAACAGTCAGTCTTGTTAAAAGTGA -TCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACA -CAATAATGGAAAAGAATGTTACTGTTACACATGCCCAAGACATACTGGAA -AGGACACACAACGGGAAGCTCTGCGATCTAAATGGAGTGAAACCTCTCAT -TTTGAGGGATTGTAGTGTAGCTGGATGGCTCCTCGGAAACCCTATGTGTG -ACGAATTCATCAATGTGCCGGAATGGTCTTACATAGTGGAGAAGGCCAGT -CCAGCCAATGACCTCTGTTATCCAGGGAATTTCAACGACTATGAAGAACT -GAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCC -CCAAAAGTTCTTGGTCCAATCATGATGCCTCATCAGGGGTTAGCTCAGCA -TGTCCATACCTTGGGAGGTCCTCCTTTTTCAGAAATGTGGTATGGCTTAT -CAAAAAGAACAGTGCATACCCAACAATAAAGAGGAGCTACAATAATACCA -ACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCG -GCAGAGCAGACAAAGCTTTATCAAAATCCAACCACCTACATTTCCGTTGG -AACATCAACACTGAACCAGAGATTGGTTCCAGAAATAGCTACTAGACCCA -AAGTAAACGGGCAAAGTGGAAGAATGGAGTTCTTCTGGACAATTTTAAAG -CCGAATGATGCCATCAATTTCGAGAGTAATGGAAATTTCATTGCCCCAGA -ATATGCATACAAAATTGTCAAGAAAGGGGACTCAACAATTATGAAAAGTG -AATTGGAATATGGTAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCG -ATAAACTCTAGTATGCCATTCCACAACATACACCCCCTCACCATCGGGGA -ATGCCCCAAATATGTGAAATCAAACAGATTAGTTCTTGCGACTGGACTCA -GAAATACCCCTCAAAGGGAGAGAAGAAGAAAAAAGAGAGGACTATTTGGA -GCTATAGCAGGTTTTATAGAGGGAGGATGGCAG----------------- --------------------------------------------------- --------------------------------------------------- --------------------------------------------------- --------------------------------------------------- --------------------------------------------------- --------------------------------------------------- --------------------------------------------------- --------------------------------------------------- --------------------------------------------------- --------------------------------------------------- --------------------------------------------------- ------------------------------------------------- ->DUCK_VIETNAM_376_2005 -ATGGAGAAAATAGTGCTTCTTTTTGCGATAGTCAGTCTTGTTAAAAGTGA -TCAGATTTGCATTGGTTACCATGCAAACAACTCAACAGAGCAGGTTGACA -CAATAATGGAAAAGAACGTTACTGTTACACATGCCCAAGACATACTGGAA -AAGACACACAACGGGAAGCTCTGCGATCTAGATGGAGTGAAGCCTCTAAT -TTTGAGAGATTGTAGTGTAGCTGGATGGCTCCTCGGAAACCCAATGTGTG -ACGAATTCATCAATGTGCCGGAATGGTCTTACATAGTGGAGAAGGCCAAT -CCAGTCAATGACCTCTGTTACCCAGGGGATTTCAATGACTATGAAGAATT -GAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCC -CCAAAAGTTCTTGGTCCAGTCATGAAGCCTCATTAGGAGTGAGCTCAGCA -TGTCCATACCAGGGAAATCCCTCCTTTTTCAGAAATGTGGTATGGCTTAT -CAAAAAGAACAGTACATACCCAACAATAAAGAGGAACTACAATAATACCA -ACCAAGAAGATCTTTTGGTAATGTGGGGGATTCACCATCCTAATGATGCG -GCAGAGCAGACAAAGCTCTATCAAAACCCAACCACCTATATTTCCGTTGG -GACATCAACACTAAACCAGAGATTGGTACCAAGAATAGCTACTAGATCCA -AAATAAACGGGCAAAGTGGGAGGATAGAGTTCTTCTGGACAATTTTAAAA -CCGAATGATGCAATCAACTTCGAGAGTAATGGAAATTTCATTGCTCCAGA -ATATGCATACAAAATTGTCAAGAAAGGGGACTCAACAATTATGAAAAGTG -AATTGGAATATGGTAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCG -ATAAACTCTAGTATGCCATTCCACAATATACATCCTCTCACCATCGGGGA -GTGCCCCAAATATGTGAAATCAAACAGATTAGTCCTTGCGACTGGGCTCA -GAAATAGCCCTCAAAGAGAGAGAAGAAGAAAAAAGAGAGGATTATTTGGA -GCTATAGCAGGTTTTATAGAAGGAGGATGGCAAGGAATGGTAGATGGTTG -GTATGGGTACCACCATAGCAATGAGCAGGGAAGTGGGTACGCTGCAGACA -AAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCG -ATCATTGACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAA -CAACTTAGAAAGGAGAATAGAGAATTTAAACAAGAAGATGGAAGACGGGT -TCCTAGATGTCTGGACTTATAATGCTGAACTTCTGGTTCTCATGGAAAAT -GAGAGAACTCTAGACTTTCATGACTCAAATGTCAAGAACCTTTACGACAA -GGTCCGACTACAGCTTAGAGATAATGCAAAGGAGCTGGGTAACGGTTGTT -TCGAGTTCTATCATAAATGTGATAATGAATGTATGGAAAGTGTAAGAAAC -GGAACGTATGACTACCCGCAGTATTCAGAAGAAGCAAGATTAAAAAGAGA -GGAAATAAGTGGAGTAAAATTGGAATCAATAGGAATTTACCAAATACTGT -CAATTTATTCTACTGTGGCGAGTTCCCTAGCACTGGCAATCATGGTAGCT -GGTCTATCCTTATGGATGTGCTCCAATGGGTCGTTACAATGCAGA--- ->MALLARD_VIETNAM_16_2003 -ATGGAGAAAATAGTGCTTCTTTTTGCAATAGTCAGTCTTGTTAAAAGTGA -TCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACA -CAATAATGGAAAAGAACGTTACTGTTACACATGCCCAAGACATACTGGAA -AAGACACACAACGGGAAGCTCTGCGATCTAGATGGAGTGAAGCCTCTAAT -TTTGAGAGATTGTAGTGTAGCTGGATGGCTCCTCGGAAACCCAATGTGTG -ACGAATTCATCAATGTGCCGGAATGGTCTTACATAGTGGAGAAGGCCAAT -CCAGTCAATGACCTCTGTTACCCAGGGGATTTCAATGAATATGAAGAATT -GAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCC -CCAAAAGTTCTTGGTCCAGTCATGAAGCCTCATTAGGGGTGAGCTCAGCA -TGTCCATACCAGGGAAAGTCCTCCTTTTTCAGAAATGTGGTATGGCTTGT -CAAAAAGAACAGTACATACCCAACAATAAAGAGGAGCTACAATAATACCA -ACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCG -GCAGAGCAGACAAAGCTCTATCAAAATCCAACCACCTACATTTCCGTTGG -GACATCAACACTAAACCAGAGATTGGTACCAAGAATAGCTACTAGATCCA -AAGTAAACGGGCAAAGTGGAAGGATGGAGTTCTTCTGGACAATTTTAAAA -CCGAATGATGCAATCAACTTCGAGAGTAATGGAAATTTCATTGCTCCAGA -ATATGCATACAAAATTGTCAAGAAAGGGGACTCAACAATTATGAAAAGTG -AATTGGAATATGGTAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCG -ATAAACTCTAGTATGCCATTCCACAATATACACCCCCTCACCATCGGGGA -ATGCCCCAAATATGTGAAATCAAACAGATTAGTCCTTGCGACTGGGCTCA -GAAATAGCCCTCAAAGAGAGAGAAGAAGAAAAAAGAGAGGATTATTTGGA -GCTATAGCAGGTTTTATAGAGGGAGGATGGCAAGGAATGGTAGATGGTTG -GTATGGGTACCACCATAGCAATGAGCAGGGGAGTGGGTACGCTGCAGACA -AAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCG -ATCATTGACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAA -CAACTTAGAAAGGAGAATAGAGAATTTAAACAAGAAGATGGAAGACGGGT -TCCTAGATGTCTGGACTTATAATGCTGAACTTCTGGTTCTCATGGAAAAT -GAGAGAACTCTAGACTTTCATGACTCAAATGTCAAGAACCTTTACGACAA -GGTCCGACTACAGCTTAGGGATAATGCAAAGGAGCTGGGTAACGGTTGTT -TCGAGTTCTATCATAAATGTGATAATGAATGTATGGAAAGTGTAAGAAAC -GGAACGTATGACTACCCGCAGTATTCAGAAGAAGCAAGACTAAAAAGAGA -GGAAATAAGTGGAGTAAAATTGGAATCAATAGGAATTTACCAAATACTGT -CAATTTATTCTACAGTGGCGAGTTCCCTAGCACTGGCAATCATGGTAGCT -GGTCTATCCTTATGGATGTGCTCCAATGGGTCGTTACAATGCAGA--- ->CHICKEN_THAILAND_KANCHANABURI_CK_160_2005 -ATGGAGAAAATAGTGCTTCTTTTTGCAATAGTCAGTCTTGTTAAAAGTGA -TCAGATTTGCATTGGTTACCATGCAAACAACTCAACAGAGCAGGTTGACA -CAATAATGGAAAAGAACGTTACTGTTACACATGCCCAAGACATACTGGAA -AAGACACACAACGGGAAGCTCTGTGATCTAGATGGAGTGAAGCCTCTAAT -TTTGAGAGATTGTAGTGTAGCTGGATGGCTCCTTGGAAACCCAATGTGTG -ATGAATTCATCAATGTGCCGGAATGGTCTTACATAGTGGAGAAGGCCAAT -CCAGCCAATGACCTCTGTTACCCAGGGGATTTCAATGACTATGAAGAATT -GAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCC -CCAAAAGTTCTTGGTCCAGTCATGAAGCCTCATTAGGAGTGAGCTCAGCA -TGTCCATATCAGGGAAAGTCCTCCTTTTTCAGAAATGTGGTATGGCTTAT -CAAAAAGAACAGTACATACCCAACAATAAAGAGGAGCTACAATAATACCA -ACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCG -GCAGAGCAGACAAAGCTCTATCAAAACCCAACCACCTACATTTCCGTTGG -GACATCAACACTAAACCAGAGATTGGTACCAAGAATAGCTACTAGATCCA -AAGTAAACGGGCAAAGTGGAAGGATGGAGTTCTTCTGGACAATTTTAAAA -CCGAATGATGCAATCAACTTCGAGAGTAATGGAAATTTCATTGCTCCAGA -ATATGCATACAAAATTGTCAAGAAAGGGGACTCAACAATTATGAAAAGTG -AATTGGAATATGGTAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCG -ATAAACTCTAGTATGCCATTCCACAATATACACCCTCTCACCATCGGGGA -ATGCCCCAAATATGTGAAATCAAACAGATTAGTCCTTGCGACTGGACTCA -GAAATAGCCCTCAAAGAGAGAAAAGAAGAAAAAAGAGAGGATTATTTGGA -GCTATAGCAGGTTTTATAGAGGGAGGATGGCAGGGAATGGTAGATGGTTG -GTATGGGTACCACCATAGCAATGAGCAGGGGAGTGGGTACGCTGCAGACA -AAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCG -ATCATTGACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAA -CAACTTAGAAAGGAGAATAGAGAATTTAAACAAGAAGATGGAAGACGGGT -TCCTAGATGTCTGGACTTATAATGCTGAACTTCTGGTTCTCATGGAAAAT -GAGAGAACTCTAGACTTTCATGACTCAAATGTCAAGAACCTTTACGACAA -GGTCCGACTACAGCTTAGGGATAATGCAAAGGAGCTGGGTAACGGTTGTT -TCGAGTTCTATCATAAATGTGATAATGAATGTATGGAAAGTGTAAGGAAC -GGAACGTATGACTACCCGCAGTATTCAGAAGAAGCAAGACTAAAAAGAGA -GGAAATAAGTGGAGTAAAATTGGAATCAATAGGAATTTACCAAATACTGT -CAATTTATTCTACAGTAGCGAGTTCCCTAGCACTGGCAATCATGGTAGCT -GGTCTATCCTTATGGATGTGCTTCAATGGGTCGTTACAATGCAGAATT ->DUCK_GUANGZHOU_20_2005 -ATGGAGAAAATAGTGCTTCTTCTTGCAATAGTCAGTCTTGTTAAAAGTGA -TCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACA -CAATAATGGAAAAGAACGTTACTGTTACACATGCCCAAGACATACTGGAA -AAGACACACAATGGGAAGCTCTGCGACCTAGATGGGGTGAAGCCTCTAAT -TTTGAGAGATTGTAGTGTAGCTGGATGGCTCCTCGGGAACCCAATGTGTG -ACGAATTCATCAATGTACCGGAATGGTCTTACATAGTGGAGAAGGCCAAT -CCAGCCAATGACCTCTGTTACCCAGGTGATTTCAACGATTATGAAGAACT -GAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCC -CCAAAAGTTCTTGGTCCAACCATGAATCCTCATCAGGGGTGAGCTCAGCA -TGTCCATACCTGGGAAAGCCCTCCTTTTTCAGAAATGTGGTATGGCTTAT -CAAAAAGAACAATGCATACCCAACAATAAAGAAGAGCTACAATAATACCA -ACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCG -ACAGAGCAGACAAAGCTCTATCAAAACCCAACCACTTATATTTCCGTTGG -AACATCAACACTAAACCAGAGATTGGTACCAAAAATAGCTACCAGATCCA -AAGTAAACGGGCAAAGTGGAAGGATGGAGTTCTTCTGGACAATTTTAAAA -CCGAATGATGCAATCAACTTCGAGAGTAATGGAAATTTCATTGCTCCAGA -ATATGCATACAAAATTGTCAAGAAAGGGGACTCAGCAATTATGAAAAGTG -AATTGGAATATGGTAACTGCAACACCAAATGTCAAACTCCAATGGGGGCG -ATAAACTCTAGTATGCCATTCCACAACATACACCCTCTCACCATCGGGGA -ATGCCCCAAATATGTGAAATCAAACAGATTAGTCCTTGCGACTGGGCTCA -GAAATAGCCCTCAAAGGGAGAGAAGAAGAAAGAAGAGAGGACTATTTGGA -GCTATAGCAGGTTTTATAGAGGGAGGATGGCAGGGAATGGTAGATGGTTG -GTATGGATACCACCATAGCAATGAGCAGGGGAGTGGATACGCTGCAGACA -AAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCG -ATCATTGACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAA -TAACTTAGAAAGGAGAATAGAGAATTTAAACAAGAAGATGGAAGACGGAT -TCCTAGATGTCTGGACTTATAATGCTGAACTTCTGGTTCTCATGGAAAAT -GAGAGAACTCTAGACTTTCATGACTCAAATGTCAGGAACCTTTACGACAA -GGTCCGACTACAGCTTAGGGATAATGCAAAAGAGCTGGGTAACGGTTGTT -TCGAGTTCTATCACAAATGTGATGATGAATGCATGGAAAGTGTAAGAAAC -GGAACGTATGACTACCCGCAGTATTCAGAAGAAGCAAGGCTAAAAAGAGA -GGAAATAAGTGGAGTAAAATTGGAATCAATAGGAACTTACCAAATACTGT -CAATTTATTCAACAGTGGCAAGTTCCCTAGCGCTGGCAATCATGGTAGCT -GGTCTATCTTTATGGATGTGCTCCAATGGTTCGTTACAATGCAGAATT ->CK_HK_WF157_2003 -ATGGAGAAAATAGTGCTTCTTCTTGCAATAGTCAGTCTTGTTAAAAGTGA -TCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACA -CAATAATGGAAAAGAACGTTACTGTTACACATGCCCAAGACATACTGGAA -AAGACCCACAACGGGAAGCTCTGCGACCTAGATGGAGTGAAGCCTCTAAT -TTTGAGAGATTGTAGTGTAGCTGGATGGCTCCTCGGGAACCCAATGTGTG -ACGAATTCATCAATGTACCGGAATGGTCTTACATAGTGGAGAAGGCCAGT -CCATCCAATGACCTCTGTTACCCAGGGGATTTCAACAATTATGAAGAACT -GAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCC -CCAAAAGCTCTTGGTCCAATCATGAAGCCTCATCAGGGGTGAGCTCAGCA -TGTCCATACCTGGGAAAGCCCTCCTTTTTCAGAAATGTGGTATGGCTTAT -CAAAAAGAACAGTACATACCCAACAATAAAGAGGAGCTACAATAATACCA -ACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCG -GCAGAGCAGATAAAGCTCTATCAAAACCCAACCACCTATATTTCCGTTGG -AACATCAACACTAAACCAGAGATTGGTACCAAAAATAGCTACTAGATCCA -AAGTAAACGGGCAAAGTGGAAGGATGGAGTTCTTCTGGACAATTTTAAAA -CCGAATGATGCAATCAACTTCGAGAGTAATGGAAATTTCATTGCTCCAGA -ATATGCATACAAAATTGTCAAGAAAGGGGACTCAGCAATTATGAAAAGTG -AATTGGAATATGGTAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCG -ATAAACTCTAGTATGCCCTTCCACAACATACACCCTCTCACCATCGGGGA -ATGCCCCAAATATGTGAAATCAAACAGACTAGTCCTTGCGACTGGGCTCA -GAAATAGCCCTCAAAGAGAGAGAAGAAGAAAAAAGAGAGGACTATTTGGA -GCTATAGCGGGTTTTATAGAGGGAGGATGGCAGGGAATGGTAGATGGTTG -GTATGGATACCACCATAGCAATGAGCAGGGGAGTGGATACGCTGCAGACA -AAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCG -ATCATTGACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAA -TAACTTAGAAAGGAGAATAGAGAATTTAAACAAGAAGATGGAAGACGGAT -TCCTAGATGTCTGGACTTATAATGCTGAACTTCTAGTTCTCATGGAAAAT -GAGAGAACTCTAGACTTTCATGACTCAAATGTCAAGAACCTTTACGACAA -GGTCCGACTACAGCTTAGGGATAATGCAAAAGAGCTGGGTAACGGTTGTT -TCGAGTTCTATCACAAATGTGATAATGAATGTATGGAAAGTGTAAGAAAC -GGAACGTATGACTACTCGCAGTATTCAGAAGAAGCAAGACTAAAAAGAGA -GGAAATAAGTGGAGTAAAATTGGAATCAATAGGAACTTACCAAATACTGT -CAATTTATTCAACAGTGGCGAGTTCCCTAGCACTGGCAATCATGGTAGCT -GGTCTATCTTTATGGATGTGCTCCAATGGTTCGTTACAATGT------ ->SWINE_ANHUI_2004 -ATGGAGAAAATAGTGCTTCTTCTTGCAATAGTCAGTCTTGTTAAAGGTGA -TCAGATTTGCACTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACA -CAATAATGGAAAAGAACGTTACTGTTACACATGCTCAAGACATACTGGAA -AAGACACACAACGGGAAGCTCTGCGACCTAGATGGAGTGAAGCCTCTAAT -TTTAAGAGATTGTAGTGTAGCTGGATGGCTCCTCGGGAACCCAATGTGTG -ACGAATTCATCAATGTGCCGGAATGGTCTTACATAGTGGAGAAGGCCAAT -CCAGCCAATGACCTCTGTTACCCAGGGGATTTCAACGACTATGAAGAACT -GAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCC -CCAAAAGTTCTTGGTCCGATCATGAAGCCTCATCAGGGGTGAGCTCAGCA -TGTCCATACCAGGGAAGGTCCTCCTTTTTCAGAAATGTGGTATGGCTTAT -CAAAAAGAACAGTGCATACCCAACAATAAAGAGGAGCTACAATAATACCA -ACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCACCCTAATGATGCG -GCAGAGCAGATAAAGCTCTATCAAAACCCAACCACCTATATTTCCGTTGG -GACATCAACACTAAACCAGAGATTGGTACCAAAAATAGCTACTAGATCCA -AAGTAAACGGACAAAGTGGAAGAATGGAGTTCTTCTGGACAATTTTAAAA -CCGAATGATGCTATCAATTTCGAGAGTAATGGAAATTTCATTGCTCCAGA -ATATGCATACAAAATTGTCAAGAAAGGGGACTCTGCAATTATGAAAAGTG -AATTGGAATATGGCAACTGCAACACCAAGTGTCAAACTCCAGTGGGGGCG -ATAAATTCTAGCATGCCATTCCACAACATACACCCTCTCACCATCGGGGA -ATGCCCCAAATATGTGAAATCAAACAGATTAGTCCTTGCGACTGGACTCA -GAAATGCCCCTCAAAGAGAGGGAAGAAGAAAAAAGAGAGGACTATTTGGA -GCTATAGCAGGGTTTATAGAGGGAGGATGGCAGGGGATGGTAGATGGTTG -GTATGGGTACCACCATAGCAATGAGCAGGGGAGTGGATACGCTGCAGACA -AAGAATCCACTCAAAAAGCAATAGATGGAGTCACCAATAAGGTCAACTCG -ATCATTGACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAA -TAACTTAGAAAGGAGAATAGAAAATTTAAACAAGAAGATGGAGGACGGAT -TCCTAGATGTCTGGACTTATAATGCTGAACTTCTGGTTCTCATGGAAAAT -GAGAGAACTCTAGACTTTCATGACTCAAATGTCAAGAACCTTTACGACAA -GGTCCGACTACAGCTTAGGGATAATGCAAAGGAGCTGGGTAACGGTTGTT -TCGAGTTCTATCACAGATGTGATAATGAATGTATGGAAAGTGTAAGAAAC -GGAACGTATGACTACCCGCAGTATTCGGAAGAAGCAAGACTAAACAGAGA -GGAAATAAGTGGAGTAAAATTGGAATCAATAGGAACTTACCAAATACTGT -CAATTTATTCAACAGTGGCGAGTTCCCTAGCACTGGCAATCATGGTGGCT -GGTCTATCTTTATGGATGTGCTCCAATGGATCGTTACAATGCAGAATT ->DUCK_VIETNAM_272_2005 -ATGGAGAAAATAGTGCTTCTTTTTGCAATAGTCAGTCTTGTTAAAAGTGA -TCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACA -CAATAATGGAAAAGAACGTTACTGTTACACATGCCCAAGACATACTGGAA -AAGACACACAACGGGAAGCTCTGCGATCTAGATGGAGTGAAGCCTCTAAT -TTTGAGAGATTGTAGTGTAGCTGGATGGCTCCTTGGAAATCCAATGTGTG -ACGAATTCATCAATGTGCCGGAATGGTCTTACATAGTGGAGAAGGCCAAT -CCAGTCAATGACCTCTGTTACCCAGGGGATTTCAATGACTATGAAGAATT -GAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCC -CCAAAAGTTCTTGGCCCAGTCATGAAGCCTCATTAGGGGTGAGCTCAGCA -TGTCCATACCAGGGAAGGTCCTCCTTTTTCAGAAATGTGGTATGGCTTAT -CAAAAAGAACAGTACATATCCAACAATAAAGAGGAGCTACAATAATACCA -ACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCG -GCAGAGCAGACAAAGCTCTATCAAAACCCAACCACCTATATTTCCGTTGG -GACATCAACACTAAACCAGAGATTGATACCAAGAATAGCTACTAGATCCA -AAGTAAACGGGCAAAGTGGAAGGATGGAGTTCTTCTGGACAATTTTAAAA -CCGAATGATGCAATCAATTTCGAGAGTAATGGAAATTTCATTGCCCCAGA -ATACGCATACAAAATTGTCAAGAAAGGGGACTCAACAATTATGAAAAGTG -AATTGGAATATGGTAACTGCAACACCAAGTGTCAAACACCAATGGGGGCG -ATAAATTCTAGTATGCCATTCCACAATATACACCCTCTCACCATCGGGGA -ATGCCCCAAATATGTGAAATCAAACAGATTAGTCCTTGCGACTGGGCTCA -GAAATAGCCCTCAAAGAGAGAGAAGA---AAAAAGAGAGGATTATTTGGA -GCTATAGCAGGTTTTATAGAGGGGGGATGGCAGGGAATGGTAGATGGTTG -GTATGGGTACCACCATAGCAATGAACAGGGGAGTGGGTACGCTGCAGACA -AAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCG -ATCATTGACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAA -CAACTTAGAAAGGAGAATAGAGAATTTAAACAAGAAGATGGAAGACGGGT -TCCTAGATGTCTGGACTTATAATGCTGAACTTCTGGTTCTCATGGAAAAT -GAGAGAACTCTAGACTTTCATGACTCAAATGTCAAGAACCTTTACGACAA -GGTCCGACTACAGCTTAGGGATAATGCAAAGGAGCTGGGTAACGGTTGTT -TCGAGTTCTATCATAAATGTGATAATGAATGTATGGAAAGTGTAAGAAAT -GGAACGTATGACTACCCGCAGTATTCAGAAGAAGCAAAACTAAAAAGAGA -GGAAATAAGTGGAGTAAAATTGGAATCAATAGGAATTTACCAAATACTGT -CAATTTATTCCACAGTAGCGAGTTCCCTAGCACTGGCAATCATGGTAGCT -GGTCTATCCTTATGGATGTGCTCCAATGGGTCGTTACAATGCAGA--- ->HONGKONG_97_98 -------------------------------------------------GA -CCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGATA -CAATAATGGAAAAGAATGTTACTGTTACACATGCCCAAGACATACTGGAA -AGGACACACGACGGGAAGCTCTGCGATCTAAATGGAGTGAAACCTCTCAT -TTTGAGGGATTGTAGTGTAGCTGGATGGCTCCTCGGAAACCCTATGTGTG -ACGAATTCATCAATGTGCCGGAATGGTCTTACATAGTGGAGAAGGCCAGT -CCAGCCAATGACCTCTGTTATCCAGGGAATTTCAACGACTATGAAGAACT -GAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCC -CCAAAAGTTCTTGGTCCAATCATGATGCCTCATCAGGGGTGAGCTCAGCA -TGTCCATACCTTGGGAGGTCCTCCTTTTTCAGAAATGTGGTATGGCTTAT -CAAAAAGAACAGTGCATACCCAACAATAAAGAGGAGCTACAATAATACCA -ACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCG -GCAGAGCAGACAAAGCTCTATCAAAATCCAACCACCTACATTTCCGTTGG -AACATCAACACTGAATCAGAGATTGGTTCCAGAAATAGCTACTAGACCCA -AAGTAAACGGGCAAAGTGGAAGAATGGAGTTCTTCTGGACAATTTTAAAG -CCGAATGATGCCATCAATTTCGAGAGTAATGGAAATTTCATTGCCCCAGA -ATATGCATACAAAATTGTCAAGAAAGGGGACTCAACAATTATGAAAAGTG -AATTGGAATATGGTAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCG -ATAAACTCTAGTATGCCATTCCACAACATACACCCCCTCACCATCGGGGA -ATGCCCCAAATATGTGAAATCAAACAGATTAGTTCTTGCGACTGGACTCA -GAAATACCCCTCATAGGGAGAGAAGAAGAAAAAAGAGAGGACTATTTGGA -GCTATAGCAGGTTTTATAGAAGGAGGATGGCAGGGAATGGTAGATGGTTG -GTATGGGTACCACCATAGCAATGAGCAGGGGAGTGGATACGCTGCAGACC -AAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCG -ATCATTAACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAA -TAACTTAGAAAGGAGAATAGAGAATTTAAACAAGAAAATGGAAGACGGAT -TCCTAGATGTCTGGACTTACAATGCTGAACTTCTGGTTCTCATGGAAAAT -GAGAGAACTCTCGACTTTCATGACTCAAATGTCAAGAACCTTTACGACAA -GGTCCGACTACAGCTTAGGGATAATGCAAAGGAACTGGGTAATGGTTGTT -TCGAATTCTATCACAAATGTGATAATGAATGTATGGAAAGTGTAAAAAAC -GGAACGTATGACTACCCGCAGTATTCAGAAGAAGCAAGACTAAACAGAGA -GGAAATAAGTGGAGTAAAATTGGAATCAATGGGAACTTACCAAATACTGT -CAATTTATTCAACAGTGGCGAGTTCCCTAGCACTGGCAATCATGGTAGCT -GGTCTATCTTTATGGATGTGCTCCAATGGATCGTTACAATGCAGAATT ->GOOSE_SHANTOU_2216_2005 -ATGGAGAAAATAGTGCTTCTTCTTGCAATAATCAGCCTTGTTAAAAGTGA -TCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACA -CAATAATGGAAAAGAACGTTACTGTTACACATGCCCAAGACATACTGGAA -AAGACACACAATGGGAAGCTCTGCGACTTAGATGGGGTGAAGCCTCTAAT -TTTGAGAGACTGTAGTGTAGCTGGATGGCTCCTCGGGAACCCAATGTGTG -ACGAATTCATCAATGTACCGGAATGGTCTTACATAGTGGAGAAGGCCAGT -CCAGCCAATGACCTCTGTTACCCAGGTGATTTCAACGATTATGAAGAACT -GAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCC -CCAAAAGTTCTTGGTCCAATCATGAAGCCTCATCAGGGGTGAGCTCAGCA -TGTCCATACCTGGGAAAGCCCTCCTTTTTCAGAAATGTGGTATGGCTTAT -CAAAAAGAACAGTGCATACCCAACAATAAAGAGGAGCTACAATAATACCA -ACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCG -GCAGAGCAGACAAAGCTCTATCAAAACCCAATCACCTATATTTCCGTTGG -AACATCAACACTAAACCAGAGATTGGTACCAAAAATAGCTACCAGATCCA -AAGTAAACGGGCAAAGTGGAAGGATGGAGTTCTTCTGGACAATTTTAAAA -CCGAATGATTCAATCAACTTCGAGAGTAATGGAAATTTCATTGCTCCAGA -ATATGCATACAAAATTGTCAAGAAAGGGGACTCAGCAATTATGAAAAGCG -AATTGGAATATGGTAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCG -ATAAACTCTAGTATGCCATTCCACAACATACACCCTCTCACCATCGGGGA -ATGCCCCAAATATGTGAAATCAAACAGATTAGTCCTTGCGACTGGGCTCA -GAAATAGCCCTCAAAGAGAGAGAAGAAGAAAGAAGAGAGGACTATTTGGA -GCTATAGCAGGTTTTATAGAGGGAGGATGGCAGGGAATGGTAGATGGTTG -GTATGGATACCACCATAGCAATGAGCAGGGGAGTGGATACGCTGCAGACA -AAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCG -ATCATTGACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAA -TAACTTAGAAAGGAGAATAGAGAATTTAAACAAGAAGATGGAAGACGGAT -TCCTAGATGTCTGGACTTATAATGCTGAACTTCTGGTTCTCATGGAAAAT -GAGAGAACTCTAGACTTTCATGACTCAAATGTCAAGAACCTTTACGACAA -GGTCCGACTACAGCTTAGGGATAATGCAAAAGAGCTAGGTAACGGTTGTT -TCGAGTTCTATCACAAATGTGATAATGAATGCATGGAAAGTGTAAGAAAC -GGAACGTATGACTACCCGCAATATTCAGAAGAAGCAAGGCTAAAAAGAGA -GGAAATTAGTGGAGTAAAATTGGAATCAATAGGAACTTACCAAATACTGT -CAATTTATTCAACAGTGGCAAGTTCCCTAGCGCTGGCAATCATGGTAGCT -GGTCTATCTTTATGGATGTGCTCCAATGGTTCGTTACAATGCAGAATT ->TREESPARROW_HENAN_3_2004 -ATGGAGAAAATAGTGCTTCTTCTTGCAATAGTCAGTCTTGTTAAAAGTGA -TCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACA -CTATAATGGAAAAGAACGTTACTGTTACACATGCCCAAGACATACTGGAA -AAGACACACAACGGGAAGCTCTGCGATCTAGATGGAGTGAAGCCTCTAAT -TTTGAGAGATTGTAGTGTAGCTGGATGGCTCCTCGGAAACCCAATGTGTG -ACGAATTCATCAATGTGCCGGAATGGTCTTACATAGTGGAGAAGGCCAGT -CCAGCCAATGACCTCTGTTACCCAGGGGATTTCAACGACTATGAAGAACT -GAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCGGATCATCC -CCAAAAGTTCTTGGTCCAATCATGATGCCTCATCAGGGGTGAGCTCAGCA -TGTCCATACCAGGGGAAGCCCTCCTTTTTCAGAAATGTGGTATGGCTTAT -CAAAAAGAACAGTACATACCCAACGATAAAGAGGAGCTACAATAATACCA -ACCCAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCG -GCAGAGCAGATAAAGCTCTATCAAAACCCAACCACCTATATTTCCGTTGG -AACATCAACACTAAACCAGAGATTGGTACCAAAAATAGCTACTAGATCCA -AAGTAAATGGGCAAAGTGGAAGAATGGAGTTCTTCTGGACAATTTTAAAG -CCGAATGACGCTATCAACTTCGAGAGTAATGGAAATTTCATTGCTCCAGA -ATATGCATACAAAATTGTCAAGAAAGGGGACTCAGCAATTATGAAAAGTG -AATTGGAATATGGTAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCG -ATAAATTCTAGTATGCCATTCCACAACATACACCCTCTCACCATCGGGGA -ATGCCCCAAATATGTGAAATCAAACAGATTAGTCCTTGCGACAGGGCTCA -GAAATAGCCCTCAAAGAGAGGGAAGAAGAAAAAAGAGAGGACTATTTGGA -GCTATAGCAGGTTTTATAGAGGGAGGATGGCAGGGAATGGTAGATGGTTG -GTATGGGTACCACCATAGCAATGAGCAGGGGAGTGGATACGCTGCAGACA -AAGAATCCACTCAAAAAGCAATAGATGGAGTCACCAATAAGGTCAACTCG -ATCATTGACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAA -TAACTTAGAAAGGAGAATAGAAAATTTAAACAAGAAGATGGAGGACGGAT -TCCTAGATGTCTGGACTTATAATGCTGAACTTCTGGTTCTCATGGAAAAT -GAGAGAACTCTAGACTTTCATGACTCAAATGTCAAGAACCTTTACGAAAA -GGTCCGACTACAACTTAGGGATAATGCAAAGGAGCTGGGTAACGGTTGTT -TCGAGTTCTATCACAAATGTGATAATGAATGTATGGAAAGTGTAAAAAAC -GGAACGTATGACTACCCGCAGTATACGGAAGAAGCAAGACTAAACAGAGA -GGAAATAAGTGGAGTAAAATTGGAATCAATAGGAACTTACCAAATACTGT -CAATTTATTCAACAGTAGTGAGTTCCCTAGCACTGGCAATCATGGTAGCT -GGTCTATCTTTATGGATGTGCTCCAATGGATCGTTACAATGCAGAATT ->PEREGRINEFALCON_HK_D0028_2004 -ATGGAGAAAATAGTGCTTCTTCTTGCAATAGTCAGTCTTGTTAAAAGTGA -TCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACA -CAATAATGGAAAAGAATGTTACTGTTACACATGCCCAAGACATACTGGAA -AAGACACACAATGGGAAGCTCTGTGACCTAGATGGGGTGAAGCCTCTAAT -TTTGAGAGATTGTAGTGTCGCTGGATGGCTCCTCGGGAACCCAATGTGTG -ACGAATTCATCAATGTACCGGAATGGTCTTACATAGTGGAGAAGGCCAGT -CCAGCCAATGACCTCTGTTACCCAGGTGATTTCAACGATTATGAAGAACT -GAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCC -CCAAAAGTTCTTGGTCCAATCATGAAGCCTCATCAGGGGTGAGCTCAGCA -TGTCCATACCTGGGAAAGCCCTCCTTTTTCAGAAATGTGGTATGGCTTAT -CAAAAAGAACAGTGCATACCCAACAATAAAGAGGAGCTACAATAATACCA -ACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCG -GCAGAGCAGACAAAGCTCTATCAAAACCCAACCACCTATGTTTCCGTTGG -AACATCAACACTAAACCAGAGATTGGTACCAAAAATAGCCACCAGATCCA -AAGTAAACGGGCAAAGTGGAAGGATGGAGTTCTTCTGGACAATTTTAAAA -CCGAATGATGCAATCAACTTCGAGAGTAATGGAAATTTCATTGCTCCAGA -ATATGCATACAAAATTGTCAAGAAAGGGGACTCAGCAATTATGAAAAGTG -AATTGGAATATGGTAACTGCAATACCAAGTGTCAAACTCCAATGGGGGCG -ATAAACTCTAGTATGCCATTCCACAACATACACCCTCTCACCATCGGGGA -ATGCCCCAAATATGTGAAATCAAACAGATTAGTCCTTGCGACTGGGCTCA -GAAATAGCCCTCAAAGAGAGAGAAGAAGAAAAAAGAGAGGACTATTTGGA -GCTATAGCAGGTTTTATAGAGGGAGGATGGCAGGGAATGGTAGATGGTTG -GTATGGATACCACCATAGCAATGAGCAGGGGAGTGGATACGCTGCAGACA -AAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCG -ATCATTGACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAA -TAACTTAGAAAGGAGAATAGAGAATTTAAACAAGAAGATGGAAGACGGAT -TCCTAGATGTCTGGACTTATAATGCTGAACTTCTGGTTCTCATGGAAAAT -GAGAGAACTCTAGACTTTCATGACTCAAATGTCAAGAACCTTTACGACAA -GGTCCGACTACAGCTTAGGGATAATGCAAAAGAGCTGGGTAACGGTTGTT -TCGAGTTCTATCACAAATGTGATAATGAATGTATGGAAAGTGTAAGAAAC -GGAACGTATGACTACCCGCAGTATTCAGAAGAAGCAAGACTAAAAAGAGA -GGAAATAAGTGGAGTAAAATTGGAATCAATAGGAACTTACCAAATACTGT -CAATTTATTCAACAGTGGCGAGTTCCCTAGCGCTGGCAATCATGGTAGCT -GGTCTATCTTTATGGATGTGCTCC------------------------ ->TREESPARROW_HENAN_2_2004 -ATGGAGAAAATAGTGCTTCTTCTTGCAATAGTCAGTCTTGTTAAAAGTGA -TCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACA -CAATAATGGAAAAGAACGTTACTGTTACACATGCTCAAGACATATTGGAA -AAGACACACAACGGGAAGCTCTGCGACCTAGATGGAGTGAAGCCTCTAAT -TTTGAAAGATTGTAGTGTAGCTGGATGGCTCCTCGGAAACCCAATGTGTG -ACGAATTCATCAATGTGCCGGAGTGGTCTTACATAGTGGAGAAGGCCAGT -CCAGCCAATGACCTCTGTTACCCAGGGGATTTCAACGACTATGAAGAACT -GAAACACCTATTGAGCAGAATAAACCATTTTGAAAAAATTCAGATCATCC -CCAAAAGTTCTTGGTCCGATCATGAAGCCTCATCAGGGGTGAGCTCAGCA -TGTCCATACCTGGGGAAGCCCTCCTTTTTCAGAAATGTGGTATGGCTTAT -CAAAAAGAACAGTACATACCCAACAATAAAGAGGGGCTACAATAATACCA -ACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCG -GCAGAGCAGATAAAGCTCTATCAAAACCCAACCACCTATATTTCCGTTGG -AACATCAACACTAAACCAGAGATTGGTACCAAAAATAGCTACTAGATCCA -AAGTAAACGGACAAAGTGGAAGAATGGAGTTCTTCTGGACAATTTTAAAA -CCGAATGATGCTATCAATTTCGAGAGTAATGGAAATTTCATTGCTCCAGA -ATATGCATACAAAATTGTCAAGAAAGGGGACTCTGCAATTATGAAGAGTG -AATTGGAATATGGCAACTGCAACACCAAGTGTCAAACTCCAGTGGGGGCG -ATAAATTCTAGCATGCCATTCCACAACATACACCCTCTCACCATCGGGGA -ATGCCCCAAATATGTGAAATCAAACAGATTAGTCCTTGCGACTGGACTCA -GAAATGCCCCTCAAAGAGAGGGAAGAAGAAAAAAGAGAGGACTATTTGGA -GCTATAGCAGGGTTTATAGAGGGAGGATGGCAGGGGATGGTAGATGGTTG -GTATGGGTACCACCATAGCAATGAGCAGGGGAGTGGATACGCTGCAGACA -AAGAATCCACTCAAAAAGCAATAGATGGAGTCACCAATAAGGTCAACTCG -ATCATTGACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAA -TAACTTAGAAAGGAGAATAGAAAATTTAAACAAGAAGATGGAGGACGGAT -TCCTAGATGTCTGGACTTATAATGCTGAACTTCTGGTTCTCATGGAAAAT -GAGAGAACTCTAGACTTTCATGACTCAAATGTCAAGAACCTTTACGAAAA -GGTCCGACTACAACTTAGGGATAATGCAAAGGAGCTGGGTAACGGTTGTT -TCGAGTTCTATCACAAATGTGATAATGAATGTATGGAAAGTGTAAAAAAC -GGAACGTATGACTACCGGCTGGACTCAGAAGAAGCAAGACTAAACAGAGA -GGAAATAAGTGGAGTAAAATTGGAATCAATAGGAACTTACCAAATACTGT -CAATTTATTCAACAGTGGCGAGTTCCCTAGCACTGGCAATCATGGTAGCT -GGTCTATCTTTATGGATGTGCTCCAATGGATCGTTACAATGCAGAATT ->HONGKONG_538_97 -------------------------------------------------GA -TCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACA -CAATAATGGAAAAGAATGTTACTGTTACACATGCCCAAGACATACTGGAA -AGGACACACAACGGGAAGCTCTGCGATCTAAATGGAGTGAAACCTCTCAT -TTTGAGGGATTGTAGTGTAGCTGGATGGCTCCTCGGAAACCCTATGTGTG -ACGAATTCATCAATGTGCCGGAATGGTCTTACATAGTGGAGAAGGCCAGT -CCAGCCAATGACCTCTGTTATCCAGGGAATTTCAACGACTATGAAGAACT -GAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCC -CCAAAAGTTCTTGGTCCAATCATGATGCCTCATCAGGGGTGAGCTCAGCA -TGTCCATACCTTGGGAGGTCCTCCTTTTTCAGAAATGTGGTATGGCTTAT -CAAAAAGAACAGTGCATACCCAACAATAAAGAGGAGCTACAATAATACCA -ACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCG -GCAGAGCAGACAAAGCTCTATCAAAATCCAACCACCTACATTTCCGTTGG -AACATCAACACTGAACCAGAGATTGGTTCCAGAAATAGCTACTAGACCCA -AAGTAAACGGGCAAAGTGGAAGAATGGAGTTCTTCTGGACAATTTTAAAG -CCGAATGATGCCATCAATTTCGAGAGTAATGGAAATTTCATTGCCCCAGA -ATATGCATACAAAATTGTCAAGAAAGGGGACTCAACAATTATGAAAAGTG -AATTGGAATATGGTAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCG -ATAAACTCTAGTATGCCATTCCACAACATACACCCCCTCACCATCGGGGA -ATGCCCCAAATATGTGAAATCAAACAGATTAGTTCTTGCGACTGGACTCA -GAAATACCCCTCAAAGGGAGAGAAGAAGAAAAAAGAGAGGACTATTTGGA -GCTATAGCAGGTTTTATAGAGGGAGGATGGCAGGGAATGGTAGATGGTTG -GTATGGGTACCACCATAGCAATGAGCAGGGGAGTGGATACGCTGCAGACC -AAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCG -ATCATTAACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAA -TAACTTAGAAAGGAGAATAGAGAATTTAAACAAGAAAATGGAAGACGGAT -TCCTAGATGTCTGGACTTACAATGCTGAACTTCTGGTTCTCATGGAAAAT -GAGAGAACTCTCGACTTTCATGACTCAAATGTCAAGAACCTTTACGACAA -GGTCCGACTACAGCTTAGGGATAATGCAAAGGAACTGGGTAATGGTTGTT -TCGAATTCTATCACAAATGTGATAATGAATGTATGGAAAGTGTAAGAAAC -GGAACGTATGACTACCCGCAGTATTCAGAAGAAGCAAGACTAAACAGAGA -GGAAATAAGTGGAGTAAAATTGGAATCAATGGGAACTTACCAAATACTGT -CAATTTATTCAACAGTGGCGAGTTCCCTAGCACTGGCAATCATGGTAGCT -GGTCTATCTTTATGGATGTGCTCCAATGGATCGTTACAATGCAGAATT +>BRO1_1 +ATTCTAATTTAAACTATTCT-CTGTTCTTTCATGGGGAAGCAGATTTGGG +TACCACCCAAGTATTGACTCACCCATCAACAACCGCTATGTATTTCGTAC +ATTAC-TGCCAGCCACCATGAATATTGTACGGTACCATAAA-TACTTGAC +CACCTGTAGTACATAAAAACCC-AATCC--ACATCAAAA----CCCCCCC +CC-CATGCTTACAAGCAAGTACAGCAACCAACCCTCAA-CTATCACACAT +CAACTGCAACTCCAAAGCCAC-CCCTCACCCAC-TAGGATACCAACAAAC +CTACCCACCC-TTAACAGTACATAGTACATAAAGCCATTTACCGTACATA +GCACATTACA-GTCAAATCCCTTCTCGTCCCC-ATGG-ATGACCCCCC-T +CAGAT-AGGGGTCCCTTGACCACCATCC +>BRO2 +ATTCTAATTTAAACTATTCT-CTGTTCTTTCATGGGGAAGCAGATTTGGG +TACCACCCAAGTATTGACTCACCCATCAACAACCGCTATGTATTTCGTAC +ATTAC-TGCCAGCCACCATGAATATTGTACGGTACCATAAA-TACTTGAC +CACCTGTAGTACATAAAAACCC-AATCC--ACATCAAAA----CCCCCCC +CC-CATGCTTACAAGCAAGTACAGCAACCAACCCTCAA-CTATCACACAT +CAACTGCAACCCCAAAGCCAC-CCCTCACCCAC-TAGGATACCAACAAAC +CTACCCACCC-TTAACAGTACATAGTGCATAAAGCCATTTACCGTACATA +GCACATTATA-GTCAAATCCCTTCTCGTCCCC-ATGG-ATGACCCCCC-T +CAGAT-AGGGGTCCCTTGACCACCATCC +>BRO3_1 +ATTCTAATTTAAACTATTCT-CTGTTCTTTCATGGGGAAGCAGATTTGGG +TACCACCCAAGTATTGACTCACCCATCAACAACCGCTATGTATTTCGTAC +ATTAC-TGCCAGCCACCATGAATATTGTACGGTACCATAAA-TACTTGAC +CACCTGTAGTACATAAAAACCC-AATCC--ACATCAAAA----CCCCCCC +CC-CATGCTTACAAGCAAGTACAGCAACCAACCCTCAA-CTATCACACAT +CAGCTGCAACTCCAAAGCCAC-CCCTCACCCAC-TAGGATACCAACAAAC +CTACCCACCC-TTAACAGTACATAGTACATAAAGCCATTTACCGTACATA +GCACATTACA-GTCAAATCCCTTCTCGTCCCC-ATGG-ATGACCCCCC-T +CAGAT-AGGGGTCCCTTGACCACCATCC +>BRO4 +ATTCTAATTTAAACTATTCT-CTGTTCTTTCATGGGGAAGCAGATTTGGG +TACCACCCAAGTATTGACTCACCCATCAACAACCGCTATGTATTTCGTAC +ATTAC-TGCCAGCCACCATGAATATTGTACGGTACCATAAA-TACTTGAC +CACCTGTAGTACATAAAAACCC-AATCC--ACATCAAAA----CCCCCCC +CC-CATGCTTACAAGCAAGTACAGCAACCAACCCTCAA-CTATCATACAT +CAACTGCAACTCCAAAGCCAC-CCCTCACCCAC-TAGGATACCAACAAAC +CTACCCACCC-TTAACAGTACATAGTACATAAAGCCATTTACCGTACATA +GCACATTACA-GTCAAATCCCTTCTCGTCCCC-ATGG-ATGACCCCCC-T +CAGAT-AGGGGTCCCTTGACCACCATCC +>BRO5 +ATTCTAATTTAAACTATTCT-CTGTTCTTTCATGGGGAAGCAGATTTGGG +TACCACCCAAGTATTGACTCACCCATCAACAACCGCTATGTATTTCGTAC +ATTAC-TGCCAGCCACCATGAATATTGTACAGTACCATAAA-TACTTGAC +CACCTGTAGTACATAAAAACCC-AATCC--ACACCAAAA----CCCCCCC +CC-CATGCTTACAAGCAAGTACAGCAACCAACCCTCAA-CTATCACACAT +CAACTGCAACTCCAAAGCCAC-CCCTCACCCAC-TAGGATACCAACAAAC +CTACCCACCC-TTAACAGTACATAGTACATAAAGCCATTTACCGTACATA +GCACATTACA-GTCAAATCCCTTCTCGTCCCC-ATGG-ATGACCCCCC-T +CAGAT-AGGGGTCCCTTGACCACCATCC +>BRO6 +ATTCTAATTTAAACTATTCT-CTGTTCTTTCATGGGGAAGCAGATTTGGG +TACCACCCAAGTATTGACTCACCCATCAACAACCGCTATGTATTTCGTAC +ATTAC-TGCCAGCCACCATGAATATTGTACGGTACCATAAA-TACTTGAC +CACCTGTAATACATAAAAACCC-AATTC--ACACCAAAA----CCCCCCC +CC-CATGCTTACAAGCAAGTACAGCAACCAACCCTCAA-CTATCACACAT +CAACTGCAACTCCAAAGCCAC-CCCTCACCCAC-TAGGATACCAACAAAC +CTACCCACCC-TTAACAGTACATAGTACATAAAGCCATTTACCGTACATA +GCACATTACA-GTCAAATCCCTTCTCGTCCCC-ATGG-ATGACCCCCC-T +CAGAT-AGGGGTCCCTTGACCACCATCC +>BRO7_1 +ATTCTAATTTAAACTATTCT-CTGTTCTTTCATGGGGAAGCAGATTTGGG +TACCACCCAAGTATTGACTCACCCATCAACAACCGCTATGTATTTCGTAC +ATTAC-TGCCAGCCACCATGAATATTGTACGGTACCATAAA-TACTTGAC +CACCTGTAGTACATAAAAACCC-AATCC--ACACCAAAA----CCCCCCC +CC-CATGCTTACAAGCAAGTACAGCAACCAACCCTCAA-CTATCACACAT +CAACTGCAACTCCAAAGCCAC-CCCTCACCCAC-TAGGATACCAACAAAC +CTACCCACCC-TTAACAGTACATAGTACATAAAGCCATTTACCGTACATA +GCACATTACA-GTCAAATCCCTTCTCGTCCCC-ATGG-ATGACCCCCC-T +CAGAT-AGGGGTCCCTTGACCACCATCC +>BRO8 +ATTCTAATTTAAACTATTCT-CTGTTCTTTCATGGGGAAGCAGATTTGGG +TACCACCCAAGTATTGACTCACCCATCAACAACCGCTATGTATTTCGTAC +ATTAC-TGCCAGCCACCATGAATATTGTACGGTACCATAAA-TACTTGAC +CACCTGTAGTACATAAAAACCC-AATCC--ACATCAAAA----CCCCCCC +CC-CATGCTTACAAGCAAGTACAGCAACCAACCCTCAA-CTATCACACAT +CAACTGCAACTCCAAAGCCAC-CCCTCACCCAC-TAGAATACCAACAAAC +CTACCCACCC-TTAACAGTACATAGTACATAAAGCCATTTACCGTACATA +GCACATTACA-GTCAAATCCCTTCTCGTCCCC-ATGG-ATGACCCCCC-T +CAGAT-AGGGGTCCCTTGACCACCATCC +>BRO9 +ATTCTAATTTAAACTATTCT-CTGTTCTTTCATGGGGAAGCAGATTTGGG +TACCACCCAAGTATTGACTCACCCATCAACAACCGCTATGTATTTCGTAC +ATTAC-TGCCAGCCACCATGAATATTGTACGGTACCATAAA-TACTTGAC +CACCTGTAGTACATAAAAACCC-AACCC--ACATCAAAA----CCCCCCC +CC-CATGCTTACAAGCAAGTACAGCAACCAACCCTCAA-CTATCACACAT +CAATTGCAACTCCAAAGCCAC-CCCTCACCCAC-TAGGATACCAACAAAC +CTACCCACCC-TTAACAGTACATAGTACATAAAGCCATTTACCGTACATA +GCACATTACA-GTCAAATCCCTTCTCGTCCCC-ATGG-ATGACCCCCC-T +CAGAT-AGGGGTCCCTTGACCACCATCC +>BRO10 +ATTCTAATTTAAACTATTCT-CTGTTCTTTCATGGGGAAGCAGATTTGGG +TACCACCCAAGTATTGACTCACCCATCAACAACCGCTATGTATTTCGTAC +ATTAC-TGCCAGCCACCATGAATATTGTACGGTACCATAAA-TACTTGAC +CACCTGTAGTACATAAAAACCC-AATCC--ACATCAAAA----CCCCCCC +CC-CATGCTTACAAGCAAGTACAGCAATCAACCTTCAA-CTATCACACAT +CAACTGCAACTCCAAAGCCAC-CCCTCACCCAC-TAGGATACCAACAAAC +CTACCCACCC-TTAACAGTACATAGCACATAAAGCCATTTATCGTACATA +GCACATTACA-GTCAAATCCCTTCTCGTCCCC-ATGG-ATGACCCCCC-T +CAGAT-AGGGGTCCCTTGACCACCATCC +>BRO11_1 +ATTCTAATTTAAACTATTCT-CTGTTCTTTCATGGGGAAGCAGATTTGGG +TACCACCCAAGTATTGACTCACCCATCAACAACCGCTATGTATTTCGTAC +ATTAC-TGCCAGCCACCATGAATATTGTACGGTACCATAAA-TACTTGAC +TACCTGTAGTACATAAAAACCC-AACCC--ACATCAAAA----CCCTGCC +CC-CATGCTTACAAGCAAGTACAGCAATCAACCTTCAA-CTGTCACACAT +CAACTGCAACTCCAAAGCCAC-CCCTCACCCAC-TAGGATACCAACAAAC +CTACCCACCC-TTAACAGTACATAGCACATAAAGTCATTTACCGTACATA +GCACATTACA-GTCAAATCCCTTCTCGTCCCC-ATGG-ATGACCCCCC-T +CAGAT-AGGGGTCCCTTGACCACCATCC +>BRO12 +ATTCTAATTTAAACTATTCT-CTGTTCTTTCATGGGGAAGCAGATTTGGG +TACCACCCAAGTATTGACTCACCCATCAACAACCGCTATGTATTTCGTAC +ATTAC-TGCCAGCCACCATGAATATTGTACAGTACCATAAA-TACTTGAC +TACCTGTAGTACATAAAAACCC-AATCC--ACATCAAAA----CCCCCTC +CC-CATGCTTACAAGCAAGTACAGCAATCAACCTTCAA-CTATCACACAT +CAACTGCAACTCCAAAGCCAC-CCCTCACCCAC-TAGGATACCAACAAAC +CTACCCACCC-TTAACAGTACATAGTACATAAAGCCATTTACCGTACATA +GCACATTACA-GTCAAATCCCTTCTCGTCCCC-ATGG-ATGACCCCCC-T +CAGAT-AGGGGTCCCTTGACCACCATCC \ No newline at end of file
--- a/test-data/gard-out1.nex Mon Feb 17 14:53:45 2020 -0500 +++ b/test-data/gard-out1.nex Thu Feb 20 18:11:41 2020 -0500 @@ -1,50 +0,0 @@ -#NEXUS - -BEGIN TAXA; - DIMENSIONS NTAX = 21; - TAXLABELS - 'TREESPARROW_HENAN_1_2004' 'TREESPARROW_HENAN_3_2004' 'TREESPARROW_HENAN_4_2004' 'CHICKEN_HEBEI_326_2005' 'SWINE_ANHUI_2004' 'TREESPARROW_HENAN_2_2004' 'CHICKEN_HONGKONG_915_97' 'GOOSE_HONGKONG_W355_97' 'DUCK_HONGKONG_Y283_97' 'HONGKONG_97_98' 'HONGKONG_538_97' 'DUCK_GUANGZHOU_20_2005' 'GOOSE_SHANTOU_2216_2005' 'PEREGRINEFALCON_HK_D0028_2004' 'CK_HK_WF157_2003' 'HUMAN_VIETNAM_CL105_2005' 'DUCK_VIETNAM_376_2005' 'VIETNAM_3062_2004' 'MALLARD_VIETNAM_16_2003' 'CHICKEN_THAILAND_KANCHANABURI_CK_160_2005' 'DUCK_VIETNAM_272_2005' ; -END; - -BEGIN CHARACTERS; - DIMENSIONS NCHAR = 1698; - FORMAT - DATATYPE = DNA - GAP=- - MISSING=? - ; - -MATRIX - 'TREESPARROW_HENAN_1_2004' ATGGAGAAAATAGTGCTTCTTCGTGCAATGATCAATCTTGTTAAAAGTGATCAGATTGGCGTTGGTTACCATGCAGACTACTCGACAGAGCAGGGTGACACAATAATGGAAAAGAACGTTACTGTTACACATGCTCAAGACATATTGGAAAAGACACACAACGGGAAGCTCTGCGACCTAGATGGAGTGAAGCCTCTAATTTTGAAAGATTGTAGTGTAGCTGGATGGCTCCTCGGAAACCCAATGTGTGACGAATTCATCAATGTGCCGGAGTGGTCTTACATAGTGGAGAAGGCCAGTCCAGCCAATGACCTCTGTTACCCAGGGGATTTCAACGACTATGAAGAACTGAAACACCTATTGAGCAGAATAAACCATTTTGAAAAAATTCAGATCATCCCCAAAAGTTCTTGGTCCGATCATGAAGCCTCATCAGGGGTGAGCTCAGCATGTCCATACCTGGGGAAGCCCTCCTTTTTCAGAAATGTGGTATGGCTTATCAAAAAGAACAGTACATACCCAACAATAAAGAGGGGCTACAATAATACCAACCCAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCGGCAGAGCAGATAAAGCTCTATCAAAACCCAACCACCTATATTTCCGTTGGAACATCAACACTAAACCAGAGATTGGTACCAAAAATAGCTACTAGATCCAAAGTAAATGGGCAAAGTGGAAGAATGGAGTTCTTCTGGACAATTTTAAAGCCGAATGACGCTATCAACTTCGAGAGTAATGGAAATTTCATTGCTCCAGAATATGCATACCAAATTGTCAAGAAAGGGGACTCAGCAATTATGAAAAGTGAATTGGAATATGGTAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCGATAAACTCTAGTATGCCATTCCACAACATACACCCTCTCACCATCGGGGAATGCCCCAAATATGTGAAATCAAACAGATTAGTCCTTGCGACAGGGCTCAGAAATAGCCCTCAAAGAGAGAGAAGAAGAAAAAAGAGAGGACTATTTGGAGCTATAGCAGGTTTTATAGAGGGAGGATGGCAGGGAATGGTAGATGGTTGGTATGGGTACCACCATAGCAATGAGCAGGGGAGTGGATACGCTGCAGACAAAGAATCCACTCAAAAAGCAATAGATGGAGTCACCAATAAGGTCAACTCGATCATTGACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAATAACTTAGAAAGGAGAATAGAAAATTTAAACAAGAAGATGGAGGACGGATTCCTAGATGTCTGGACTTATAATGCTGAACTTCTGGTTCTCATGGAAAATGAGAGAACTCTAGACTTTCATGACTCAAATGTCAAGAACCTTTACGAAAAGGTCCGACTACAACTTAGGGATAATGCAAAGGAGCTGGGTAACGGTTGTTTCGAGTTCTATCACAAATGTGATAATGAATGTATGGAAAGTGTAAAAAACGGAACGTATGACTACCCGCAGTATTCAGAAGAAGCAAGACTAAACAGAGAGGAAATAAGTGGAGTAAAATTGGAATCAATAGGAACTTACCAAATACTGTCAATTTATTCAACAGTGGCGAGTTCCCTAGCACTGGCAATCATGGTAGCTGGTCTATCTTTATGGATGTGCTCCAATGGATCGTTACAATGCAGAATT - 'TREESPARROW_HENAN_3_2004' ATGGAGAAAATAGTGCTTCTTCTTGCAATAGTCAGTCTTGTTAAAAGTGATCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACACTATAATGGAAAAGAACGTTACTGTTACACATGCCCAAGACATACTGGAAAAGACACACAACGGGAAGCTCTGCGATCTAGATGGAGTGAAGCCTCTAATTTTGAGAGATTGTAGTGTAGCTGGATGGCTCCTCGGAAACCCAATGTGTGACGAATTCATCAATGTGCCGGAATGGTCTTACATAGTGGAGAAGGCCAGTCCAGCCAATGACCTCTGTTACCCAGGGGATTTCAACGACTATGAAGAACTGAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCGGATCATCCCCAAAAGTTCTTGGTCCAATCATGATGCCTCATCAGGGGTGAGCTCAGCATGTCCATACCAGGGGAAGCCCTCCTTTTTCAGAAATGTGGTATGGCTTATCAAAAAGAACAGTACATACCCAACGATAAAGAGGAGCTACAATAATACCAACCCAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCGGCAGAGCAGATAAAGCTCTATCAAAACCCAACCACCTATATTTCCGTTGGAACATCAACACTAAACCAGAGATTGGTACCAAAAATAGCTACTAGATCCAAAGTAAATGGGCAAAGTGGAAGAATGGAGTTCTTCTGGACAATTTTAAAGCCGAATGACGCTATCAACTTCGAGAGTAATGGAAATTTCATTGCTCCAGAATATGCATACAAAATTGTCAAGAAAGGGGACTCAGCAATTATGAAAAGTGAATTGGAATATGGTAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCGATAAATTCTAGTATGCCATTCCACAACATACACCCTCTCACCATCGGGGAATGCCCCAAATATGTGAAATCAAACAGATTAGTCCTTGCGACAGGGCTCAGAAATAGCCCTCAAAGAGAGGGAAGAAGAAAAAAGAGAGGACTATTTGGAGCTATAGCAGGTTTTATAGAGGGAGGATGGCAGGGAATGGTAGATGGTTGGTATGGGTACCACCATAGCAATGAGCAGGGGAGTGGATACGCTGCAGACAAAGAATCCACTCAAAAAGCAATAGATGGAGTCACCAATAAGGTCAACTCGATCATTGACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAATAACTTAGAAAGGAGAATAGAAAATTTAAACAAGAAGATGGAGGACGGATTCCTAGATGTCTGGACTTATAATGCTGAACTTCTGGTTCTCATGGAAAATGAGAGAACTCTAGACTTTCATGACTCAAATGTCAAGAACCTTTACGAAAAGGTCCGACTACAACTTAGGGATAATGCAAAGGAGCTGGGTAACGGTTGTTTCGAGTTCTATCACAAATGTGATAATGAATGTATGGAAAGTGTAAAAAACGGAACGTATGACTACCCGCAGTATACGGAAGAAGCAAGACTAAACAGAGAGGAAATAAGTGGAGTAAAATTGGAATCAATAGGAACTTACCAAATACTGTCAATTTATTCAACAGTAGTGAGTTCCCTAGCACTGGCAATCATGGTAGCTGGTCTATCTTTATGGATGTGCTCCAATGGATCGTTACAATGCAGAATT - 'TREESPARROW_HENAN_4_2004' ATGGAGAAAATAGTGCTTCTTCTTGCAATAGTCAGTCTTGTTAAAAGTGATCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACACAATAATGCAAAAGAACGTTACTGTTACACATGCCCAAGACATACTGGAAAAGACACACAACGGGAAGCTCTGCGATCTAGATGGAGTGAAACCTCTAATTTTAAGAGATTGTAGTGTAGCTGGATGGCTCCTCGGAAACCCAATGTGTGACGAATTCATCAATGTGCCGGAATGGTCTTACATAGTGGAGAAGGCCAGTCCAGCCAATGACCTCTGTTACCCAGGGGATTTCAACGACTATGAAGAACTGAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCCCCAAAAGTTCTTGGTCCGATCATGAAGCCTCATCAGGGGTGAGCTCAGCATGTCCATACCAGGGGAGTCCCTCCTTTTTCAGAAATGTGGTATGGCTTATCAAAAAGAACAGTGCATACCCAACAATAAAGAGGAGCTACAATAATACCAACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCGGCAGAGCAGACAAAGCTCTATCAAAACCCAACCACCTATATTTCCGTTGGAACATCAACACTAAACCAGAGATTGGTACCAAAAATAGCTACTAGATCCAAAGTAAATGGGCAAAGTGGAAGAATGGAGTTCTTCTGGACAATTTTAAAGCCGAATGACGCTATCAACTTCGAGAGTAATGGAAATTTCATTGCTCCAGAATATGCATACAAAATTGTCAAGAAAGGGGACTCAGCAATTATGAAAAGTGAATTGGAATATGGTAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCGATAAACTCTAGTATGCCATTCCACAACATACACCCTCTCACCATCGGGGAATGCCCCAAATATGTGAAATCAAACAGATTAGTCCTTGCGACAGGGCTCAGAAATAGCCCTCAAAGAGAGAGAAGAAGAAAAAAGAGAGGACTATTTGGAGCTATAGCAGGTTTTATAGAGGGAGGATGGCAGGGAATGGTAGATGGTTGGTATGGGTACCACCATAGCAATGAGCAGGGGAGTGGATACGCTGCAGACAAAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCGATCATTGACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAATAACTTAGAAAGGAGAATAGAAAATTTAAACAAGAAGATGGAGGACGGATTCCTAGATGTCTGGACTTATAATGCTGAACTTCTGGTTCTCATGGAAAATGAGAGAACTCTAGACTTTCATGACTCAAATGTCAAGAACCTTTACGAAAAGGTCCGACTACAACTTAGGGATAATGCAAAGGAGCTGGGTAACGGTTGTTTCGAGTTCTATCACAAATGTGATAATGAATGTATGGAAAGTGTAAAAAACGGAACGTATGACTACCCGCAGTATTCAGAAGAAGCAAGACTAAACAGAGAGGAAATAAGTGGAGTAAAATTGGAATCAATAGGAACTTACCAAATACTGTCAATTTATTCAACAGTGGTGAGTTCCCTAGCACTGGCAATCATGGTAGCTGGTCTATCTTTATGGATGTGCTCCAATGGATCGTTACAATGCAGAATT - 'CHICKEN_HEBEI_326_2005' ATGGAGAGAATAGTGCTTCTTCTTGCAATAATCGGTCTTGTTAAAAGTGATCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACACAATAATGGAAAAGAACGTTACTGTTACACATGCTCAAGACATACTGGAGAAGACACACAACGGGAAGCTCTGCAACCCAGATGGAGTGAAGCCTCTAATTTTGAAAGATTGTAGTGTAGCTGGATGGCTCCTCGGAAACCCAATGTGTGACGAATTTATCAATGTGCCGGAATGGTCTTACATAGTGGAGAAGGCCAGTCCAGCCAATGGCCTCTGTTACCCAGGGGATTTCAATGACTATGAAGAACTGAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCCCCAAAAGTTCTTGGTCCGATCATGGAGCCTCATCAGGGGTGAGCTCAGCATGTTCCTATCTGGGGAAGCCCTCCTTTTTCAGAAATGTGGTATGGCTTATCAAAAAGAATAATACATACCCACCAATAAAGGTGAGCTACAACAATACCAACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCCAATGATGAGGCAGAGCAGATAAAGATCTATCAAAACCCAACCACCTATATTTCCGTTGGAACATCAACACTAAACCAGAGATTGGTACCAAAAATAGCTACTAGATCCAAAGTAAACGGGCAAAGTGGAAGAATGGAGTTCTTCTGGACAATTTTAAAGCCGAATGATGCTATCAATTTCGATAGTAATGGAAATTTCATTGCTCCAGAATATGCATACAAAATTGTCAAGAAAGGGGACTCAGCGATTATGAAAAGTGAATTGGAATATGGCAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCGATAAATTCTAGTATGCCATTCCACAACATACACCCTCTCACCGTCGGGGAATGCCCCAAATATGTGAAATCAAACAGATTAGTCCTCGCGACTGGACTCAGAAATGCCCCTCAAAGAGAGGGAGGAAGAAAAAAGAGAGGACTATTTGGAGCCATAGCAGGGTTTATAGAGGGAGGATGGCAGGGAATGGTAGATGGTTGGTATGGGTACCACCATAGCAATGAGCAGGGGAGTGGATACGCTGCAGACAAAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCGATCATTGACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAATAACTTAGAAAGGAGAATAGAAAATTTAAACAAGAAGATGGAGGACGGATTCCTAGATGTCTGGACTTATAACGCTGAACTTCTGGTTCTCATGGAAAATGAGAGAACTCTAGACTTTCATGACTCAAATGTCAAGAACCTTTACGAAAAGGTCCGACTACAGCTTAGGGATAATGCAAAGGAGCTGGGTAACGGTTGTTTCGAGTTCTATCACAAATGTGATAATGAATGTATGGAAAGTGTAAAAAACGGAACGTATGACTACCCGCAGTATTCAGAAGAAGCAAGACTAAACAGAGAGGAAATAAGTGGAGTAAAATTGGAATCAATGGGAACTTACCAAATACTGTCAATTTATTCAACAGTGGCGAGTTCCCTAGCATTGGCAATCATGGTAGCTGGTCTATCTTTATGGATGTGCTCCAATGGATCGTTACAATGCAGAATT - 'SWINE_ANHUI_2004' ATGGAGAAAATAGTGCTTCTTCTTGCAATAGTCAGTCTTGTTAAAGGTGATCAGATTTGCACTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACACAATAATGGAAAAGAACGTTACTGTTACACATGCTCAAGACATACTGGAAAAGACACACAACGGGAAGCTCTGCGACCTAGATGGAGTGAAGCCTCTAATTTTAAGAGATTGTAGTGTAGCTGGATGGCTCCTCGGGAACCCAATGTGTGACGAATTCATCAATGTGCCGGAATGGTCTTACATAGTGGAGAAGGCCAATCCAGCCAATGACCTCTGTTACCCAGGGGATTTCAACGACTATGAAGAACTGAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCCCCAAAAGTTCTTGGTCCGATCATGAAGCCTCATCAGGGGTGAGCTCAGCATGTCCATACCAGGGAAGGTCCTCCTTTTTCAGAAATGTGGTATGGCTTATCAAAAAGAACAGTGCATACCCAACAATAAAGAGGAGCTACAATAATACCAACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCACCCTAATGATGCGGCAGAGCAGATAAAGCTCTATCAAAACCCAACCACCTATATTTCCGTTGGGACATCAACACTAAACCAGAGATTGGTACCAAAAATAGCTACTAGATCCAAAGTAAACGGACAAAGTGGAAGAATGGAGTTCTTCTGGACAATTTTAAAACCGAATGATGCTATCAATTTCGAGAGTAATGGAAATTTCATTGCTCCAGAATATGCATACAAAATTGTCAAGAAAGGGGACTCTGCAATTATGAAAAGTGAATTGGAATATGGCAACTGCAACACCAAGTGTCAAACTCCAGTGGGGGCGATAAATTCTAGCATGCCATTCCACAACATACACCCTCTCACCATCGGGGAATGCCCCAAATATGTGAAATCAAACAGATTAGTCCTTGCGACTGGACTCAGAAATGCCCCTCAAAGAGAGGGAAGAAGAAAAAAGAGAGGACTATTTGGAGCTATAGCAGGGTTTATAGAGGGAGGATGGCAGGGGATGGTAGATGGTTGGTATGGGTACCACCATAGCAATGAGCAGGGGAGTGGATACGCTGCAGACAAAGAATCCACTCAAAAAGCAATAGATGGAGTCACCAATAAGGTCAACTCGATCATTGACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAATAACTTAGAAAGGAGAATAGAAAATTTAAACAAGAAGATGGAGGACGGATTCCTAGATGTCTGGACTTATAATGCTGAACTTCTGGTTCTCATGGAAAATGAGAGAACTCTAGACTTTCATGACTCAAATGTCAAGAACCTTTACGACAAGGTCCGACTACAGCTTAGGGATAATGCAAAGGAGCTGGGTAACGGTTGTTTCGAGTTCTATCACAGATGTGATAATGAATGTATGGAAAGTGTAAGAAACGGAACGTATGACTACCCGCAGTATTCGGAAGAAGCAAGACTAAACAGAGAGGAAATAAGTGGAGTAAAATTGGAATCAATAGGAACTTACCAAATACTGTCAATTTATTCAACAGTGGCGAGTTCCCTAGCACTGGCAATCATGGTGGCTGGTCTATCTTTATGGATGTGCTCCAATGGATCGTTACAATGCAGAATT - 'TREESPARROW_HENAN_2_2004' ATGGAGAAAATAGTGCTTCTTCTTGCAATAGTCAGTCTTGTTAAAAGTGATCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACACAATAATGGAAAAGAACGTTACTGTTACACATGCTCAAGACATATTGGAAAAGACACACAACGGGAAGCTCTGCGACCTAGATGGAGTGAAGCCTCTAATTTTGAAAGATTGTAGTGTAGCTGGATGGCTCCTCGGAAACCCAATGTGTGACGAATTCATCAATGTGCCGGAGTGGTCTTACATAGTGGAGAAGGCCAGTCCAGCCAATGACCTCTGTTACCCAGGGGATTTCAACGACTATGAAGAACTGAAACACCTATTGAGCAGAATAAACCATTTTGAAAAAATTCAGATCATCCCCAAAAGTTCTTGGTCCGATCATGAAGCCTCATCAGGGGTGAGCTCAGCATGTCCATACCTGGGGAAGCCCTCCTTTTTCAGAAATGTGGTATGGCTTATCAAAAAGAACAGTACATACCCAACAATAAAGAGGGGCTACAATAATACCAACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCGGCAGAGCAGATAAAGCTCTATCAAAACCCAACCACCTATATTTCCGTTGGAACATCAACACTAAACCAGAGATTGGTACCAAAAATAGCTACTAGATCCAAAGTAAACGGACAAAGTGGAAGAATGGAGTTCTTCTGGACAATTTTAAAACCGAATGATGCTATCAATTTCGAGAGTAATGGAAATTTCATTGCTCCAGAATATGCATACAAAATTGTCAAGAAAGGGGACTCTGCAATTATGAAGAGTGAATTGGAATATGGCAACTGCAACACCAAGTGTCAAACTCCAGTGGGGGCGATAAATTCTAGCATGCCATTCCACAACATACACCCTCTCACCATCGGGGAATGCCCCAAATATGTGAAATCAAACAGATTAGTCCTTGCGACTGGACTCAGAAATGCCCCTCAAAGAGAGGGAAGAAGAAAAAAGAGAGGACTATTTGGAGCTATAGCAGGGTTTATAGAGGGAGGATGGCAGGGGATGGTAGATGGTTGGTATGGGTACCACCATAGCAATGAGCAGGGGAGTGGATACGCTGCAGACAAAGAATCCACTCAAAAAGCAATAGATGGAGTCACCAATAAGGTCAACTCGATCATTGACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAATAACTTAGAAAGGAGAATAGAAAATTTAAACAAGAAGATGGAGGACGGATTCCTAGATGTCTGGACTTATAATGCTGAACTTCTGGTTCTCATGGAAAATGAGAGAACTCTAGACTTTCATGACTCAAATGTCAAGAACCTTTACGAAAAGGTCCGACTACAACTTAGGGATAATGCAAAGGAGCTGGGTAACGGTTGTTTCGAGTTCTATCACAAATGTGATAATGAATGTATGGAAAGTGTAAAAAACGGAACGTATGACTACCGGCTGGACTCAGAAGAAGCAAGACTAAACAGAGAGGAAATAAGTGGAGTAAAATTGGAATCAATAGGAACTTACCAAATACTGTCAATTTATTCAACAGTGGCGAGTTCCCTAGCACTGGCAATCATGGTAGCTGGTCTATCTTTATGGATGTGCTCCAATGGATCGTTACAATGCAGAATT - 'CHICKEN_HONGKONG_915_97' ATGGAGAAAATAGTGCTTCTTCTTGCAACAGTCAGTCTTGTTAAAAGTGATCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACACAATAATGGAAAAGAATGTTACTGTTACACATGCCCAAGACATACTGGAAAGGACACACAACGGGAAGCTCTGCGATCTAAATGGAGTGAAACCTCTCATTTTGAGGGATTGTAGTGTAGCTGGATGGCTCCTCGGAAACCCTATGTGTGACGAATTCATCAATGTGCCGGAATGGTCTTACATAGTGGAGAAGGCCAGTCCAGCCAATGACCTCTGTTATCCAGGGAATTTCAACGACTATGAAGAACTGAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCCCCAAAAGTTCTTGGTCCAATCATGATGCCTCATCAGGGGTGAGCTCAGCATGTCCATACCTTGGGAGGTCCTCCTTTTTCAGAAATGTGGTATGGCTTATCAAAAAGAACAGTGCATACCCAACAATAAAGAGGAGCTACAATAATACCAACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCGGCAGAGCAGACAAAGCTCTATCAAAATCCAACCACCTACATTTCCGTTGGAACATCAACACTGAACCAGAGATTGGTTCCAGAAATAGCTACTAGACCCAAAGTAAACGGGCAAAGTGGAAGAATGGAGTTCTTCTGGACAATTTTAAAGCCGAATGATGCCATCAATTTCGAGAGTAATGGAAATTTCATTGCCCCAGAATATGCATACAAAATTGTCAAGAAAGGGGACTCAACAATTATGAAAAGTGAATTGGAATATGGTAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCGATAAACTCTAGTATGCCATTCCACAACATACACCCCCTCACCATCGGGGAATGCCCCAAATATGTGAAATCAAACAGATTAGTTCTTGCGACTGGACTCAGAAATACCCCTCAAAGGGAGAGAAGAAGAAAAAAGAGAGGACTATTTGGAGCTATAGCAGGTTTTATAGAGGGAGGATGGCAGGGCATGGTAGATGGTTGGTATGGGTACCACCATAGCAATGAGCAGGGGAGTGGATACGCTGCAGACAAAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCGATCATTAACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAATAACTTAGAAAGGAGAATAGAGAATTTAAACAAGAAAATGGAAGACGGATTCCTAGATGTCTGGACTTACAATGCTGAACTTCTGGTTCTCATGGAAAATGAGAGAACTCTCGACTTTCATGACTCAAATGTCAAGAACCTTTACGACAAGGTCCGACTACAGCTTAGGGATAATGCAAAGGAACTGGGTAATGGTTGTTTCGAATTCTATCACAAATGTGATAATGAATGTATGGAAAGTGTAAAAAACGGAACGTATGACTACCCGCAGTATTCAGAAGAAGCAAGACTAAACAGAGAGGAAATAAGTGGAGTAAAATTGGAATCAATGGGAACTTACCAAATACTGTCAATTTATTCAACAGTGGCGAGTTCCCTAGCACTGGCAATCATGGTAGCTGGTCTATCTTTATGGATGTGCTCCAATGGATCGTTACAATGCAGAATT - 'GOOSE_HONGKONG_W355_97' ATGGAGAAAATAGTGCTTCTTCTTGCAACAGTCAGTCTTGTTAAAAGTGATCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACACAATAATGGAAAAGAATGTTACTGTTACACATGCCCAAGACATACTGGAAAGGACACACAACGGGAAGCTCTGCGATCTAAATGGAGTGAAACCTCTCATTTTGAGGGATTGTAGTGTAGCTGGATGGCTCCTCGGAAACCCTATGTGTGACGAATTCATCAATGTGCCGGAATGGTCTTACATAGTGGAGAAGGCCAGTCCAGCCAATGACCTCTGTTATCCAGGGAATTTCAACGACTATGAAGAACTGAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCCCCAAAAGTTCTTGGTCCAATCATGATGCCTCATCAGGGGTTAGCTCAGCATGTCCATACCTTGGGAGGTCCTCCTTTTTCAGAAATGTGGTATGGCTTATCAAAAAGAACAGTGCATACCCAACAATAAAGAGGAGCTACAATAATACCAACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCGGCAGAGCAGACAAAGCTTTATCAAAATCCAACCACCTACATTTCCGTTGGAACATCAACACTGAACCAGAGATTGGTTCCAGAAATAGCTACTAGACCCAAAGTAAACGGGCAAAGTGGAAGAATGGAGTTCTTCTGGACAATTTTAAAGCCGAATGATGCCATCAATTTCGAGAGTAATGGAAATTTCATTGCCCCAGAATATGCATACAAAATTGTCAAGAAAGGGGACTCAACAATTATGAAAAGTGAATTGGAATATGGTAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCGATAAACTCTAGTATGCCATTCCACAACATACACCCCCTCACCATCGGGGAATGCCCCAAATATGTGAAATCAAACAGATTAGTTCTTGCGACTGGACTCAGAAATACCCCTCAAAGGGAGAGAAGAAGAAAAAAGAGAGGACTATTTGGAGCTATAGCAGGTTTTATAGAGGGAGGATGGCAGGGCATGGTAGATGGTTGGTATGGGTACCACCATAGCAATGAGCAGGGGAGTGGATACGCTGCAGACAAAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCGATCATTAACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAATAACTTAGAAAGGAGAATAGAGAATTTAAACAAGAAAATGGAAGACGGATTCCTAGATGTCTGGACTTACAATGCTGAACTTCTGGTTCTCATGGAAAATGAGAGAACTCTCGACTTTCATGACTCAAATGTCAAGAACCTTTACGACAAGGTCCGACTACAGCTTAGGGATAATGCAAAGGAACTGGGTAATGGTTGTTTCGAATTCTATCACAAATGTGATAATGAATGTATGGAAAGTGTAAGAAACGGAACGTATGACTACCCGCAGTATTCAGAAGAAGCAAGACTAAACAGAGAGGAAATAAGTGGAGTAAAATTGGAATCAATGGGAACTTACCAAATACTGTCAATTTATTCAACAGTGGCGAGTTCCCTAGCACTGGCAATCATGGTAGCTGGTCTATCTTTATGGATGTGCTCCAATGGATCGTTACAATGCAGAATT - 'DUCK_HONGKONG_Y283_97' ATGGAGAAAATAGTGCTTCTTCTTGCAACAGTCAGTCTTGTTAAAAGTGATCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACACAATAATGGAAAAGAATGTTACTGTTACACATGCCCAAGACATACTGGAAAGGACACACAACGGGAAGCTCTGCGATCTAAATGGAGTGAAACCTCTCATTTTGAGGGATTGTAGTGTAGCTGGATGGCTCCTCGGAAACCCTATGTGTGACGAATTCATCAATGTGCCGGAATGGTCTTACATAGTGGAGAAGGCCAGTCCAGCCAATGACCTCTGTTATCCAGGGAATTTCAACGACTATGAAGAACTGAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCCCCAAAAGTTCTTGGTCCAATCATGATGCCTCATCAGGGGTTAGCTCAGCATGTCCATACCTTGGGAGGTCCTCCTTTTTCAGAAATGTGGTATGGCTTATCAAAAAGAACAGTGCATACCCAACAATAAAGAGGAGCTACAATAATACCAACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCGGCAGAGCAGACAAAGCTTTATCAAAATCCAACCACCTACATTTCCGTTGGAACATCAACACTGAACCAGAGATTGGTTCCAGAAATAGCTACTAGACCCAAAGTAAACGGGCAAAGTGGAAGAATGGAGTTCTTCTGGACAATTTTAAAGCCGAATGATGCCATCAATTTCGAGAGTAATGGAAATTTCATTGCCCCAGAATATGCATACAAAATTGTCAAGAAAGGGGACTCAACAATTATGAAAAGTGAATTGGAATATGGTAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCGATAAACTCTAGTATGCCATTCCACAACATACACCCCCTCACCATCGGGGAATGCCCCAAATATGTGAAATCAAACAGATTAGTTCTTGCGACTGGACTCAGAAATACCCCTCAAAGGGAGAGAAGAAGAAAAAAGAGAGGACTATTTGGAGCTATAGCAGGTTTTATAGAGGGAGGATGGCAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- - 'HONGKONG_97_98' ------------------------------------------------GACCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGATACAATAATGGAAAAGAATGTTACTGTTACACATGCCCAAGACATACTGGAAAGGACACACGACGGGAAGCTCTGCGATCTAAATGGAGTGAAACCTCTCATTTTGAGGGATTGTAGTGTAGCTGGATGGCTCCTCGGAAACCCTATGTGTGACGAATTCATCAATGTGCCGGAATGGTCTTACATAGTGGAGAAGGCCAGTCCAGCCAATGACCTCTGTTATCCAGGGAATTTCAACGACTATGAAGAACTGAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCCCCAAAAGTTCTTGGTCCAATCATGATGCCTCATCAGGGGTGAGCTCAGCATGTCCATACCTTGGGAGGTCCTCCTTTTTCAGAAATGTGGTATGGCTTATCAAAAAGAACAGTGCATACCCAACAATAAAGAGGAGCTACAATAATACCAACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCGGCAGAGCAGACAAAGCTCTATCAAAATCCAACCACCTACATTTCCGTTGGAACATCAACACTGAATCAGAGATTGGTTCCAGAAATAGCTACTAGACCCAAAGTAAACGGGCAAAGTGGAAGAATGGAGTTCTTCTGGACAATTTTAAAGCCGAATGATGCCATCAATTTCGAGAGTAATGGAAATTTCATTGCCCCAGAATATGCATACAAAATTGTCAAGAAAGGGGACTCAACAATTATGAAAAGTGAATTGGAATATGGTAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCGATAAACTCTAGTATGCCATTCCACAACATACACCCCCTCACCATCGGGGAATGCCCCAAATATGTGAAATCAAACAGATTAGTTCTTGCGACTGGACTCAGAAATACCCCTCATAGGGAGAGAAGAAGAAAAAAGAGAGGACTATTTGGAGCTATAGCAGGTTTTATAGAAGGAGGATGGCAGGGAATGGTAGATGGTTGGTATGGGTACCACCATAGCAATGAGCAGGGGAGTGGATACGCTGCAGACCAAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCGATCATTAACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAATAACTTAGAAAGGAGAATAGAGAATTTAAACAAGAAAATGGAAGACGGATTCCTAGATGTCTGGACTTACAATGCTGAACTTCTGGTTCTCATGGAAAATGAGAGAACTCTCGACTTTCATGACTCAAATGTCAAGAACCTTTACGACAAGGTCCGACTACAGCTTAGGGATAATGCAAAGGAACTGGGTAATGGTTGTTTCGAATTCTATCACAAATGTGATAATGAATGTATGGAAAGTGTAAAAAACGGAACGTATGACTACCCGCAGTATTCAGAAGAAGCAAGACTAAACAGAGAGGAAATAAGTGGAGTAAAATTGGAATCAATGGGAACTTACCAAATACTGTCAATTTATTCAACAGTGGCGAGTTCCCTAGCACTGGCAATCATGGTAGCTGGTCTATCTTTATGGATGTGCTCCAATGGATCGTTACAATGCAGAATT - 'HONGKONG_538_97' ------------------------------------------------GATCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACACAATAATGGAAAAGAATGTTACTGTTACACATGCCCAAGACATACTGGAAAGGACACACAACGGGAAGCTCTGCGATCTAAATGGAGTGAAACCTCTCATTTTGAGGGATTGTAGTGTAGCTGGATGGCTCCTCGGAAACCCTATGTGTGACGAATTCATCAATGTGCCGGAATGGTCTTACATAGTGGAGAAGGCCAGTCCAGCCAATGACCTCTGTTATCCAGGGAATTTCAACGACTATGAAGAACTGAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCCCCAAAAGTTCTTGGTCCAATCATGATGCCTCATCAGGGGTGAGCTCAGCATGTCCATACCTTGGGAGGTCCTCCTTTTTCAGAAATGTGGTATGGCTTATCAAAAAGAACAGTGCATACCCAACAATAAAGAGGAGCTACAATAATACCAACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCGGCAGAGCAGACAAAGCTCTATCAAAATCCAACCACCTACATTTCCGTTGGAACATCAACACTGAACCAGAGATTGGTTCCAGAAATAGCTACTAGACCCAAAGTAAACGGGCAAAGTGGAAGAATGGAGTTCTTCTGGACAATTTTAAAGCCGAATGATGCCATCAATTTCGAGAGTAATGGAAATTTCATTGCCCCAGAATATGCATACAAAATTGTCAAGAAAGGGGACTCAACAATTATGAAAAGTGAATTGGAATATGGTAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCGATAAACTCTAGTATGCCATTCCACAACATACACCCCCTCACCATCGGGGAATGCCCCAAATATGTGAAATCAAACAGATTAGTTCTTGCGACTGGACTCAGAAATACCCCTCAAAGGGAGAGAAGAAGAAAAAAGAGAGGACTATTTGGAGCTATAGCAGGTTTTATAGAGGGAGGATGGCAGGGAATGGTAGATGGTTGGTATGGGTACCACCATAGCAATGAGCAGGGGAGTGGATACGCTGCAGACCAAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCGATCATTAACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAATAACTTAGAAAGGAGAATAGAGAATTTAAACAAGAAAATGGAAGACGGATTCCTAGATGTCTGGACTTACAATGCTGAACTTCTGGTTCTCATGGAAAATGAGAGAACTCTCGACTTTCATGACTCAAATGTCAAGAACCTTTACGACAAGGTCCGACTACAGCTTAGGGATAATGCAAAGGAACTGGGTAATGGTTGTTTCGAATTCTATCACAAATGTGATAATGAATGTATGGAAAGTGTAAGAAACGGAACGTATGACTACCCGCAGTATTCAGAAGAAGCAAGACTAAACAGAGAGGAAATAAGTGGAGTAAAATTGGAATCAATGGGAACTTACCAAATACTGTCAATTTATTCAACAGTGGCGAGTTCCCTAGCACTGGCAATCATGGTAGCTGGTCTATCTTTATGGATGTGCTCCAATGGATCGTTACAATGCAGAATT - 'DUCK_GUANGZHOU_20_2005' ATGGAGAAAATAGTGCTTCTTCTTGCAATAGTCAGTCTTGTTAAAAGTGATCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACACAATAATGGAAAAGAACGTTACTGTTACACATGCCCAAGACATACTGGAAAAGACACACAATGGGAAGCTCTGCGACCTAGATGGGGTGAAGCCTCTAATTTTGAGAGATTGTAGTGTAGCTGGATGGCTCCTCGGGAACCCAATGTGTGACGAATTCATCAATGTACCGGAATGGTCTTACATAGTGGAGAAGGCCAATCCAGCCAATGACCTCTGTTACCCAGGTGATTTCAACGATTATGAAGAACTGAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCCCCAAAAGTTCTTGGTCCAACCATGAATCCTCATCAGGGGTGAGCTCAGCATGTCCATACCTGGGAAAGCCCTCCTTTTTCAGAAATGTGGTATGGCTTATCAAAAAGAACAATGCATACCCAACAATAAAGAAGAGCTACAATAATACCAACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCGACAGAGCAGACAAAGCTCTATCAAAACCCAACCACTTATATTTCCGTTGGAACATCAACACTAAACCAGAGATTGGTACCAAAAATAGCTACCAGATCCAAAGTAAACGGGCAAAGTGGAAGGATGGAGTTCTTCTGGACAATTTTAAAACCGAATGATGCAATCAACTTCGAGAGTAATGGAAATTTCATTGCTCCAGAATATGCATACAAAATTGTCAAGAAAGGGGACTCAGCAATTATGAAAAGTGAATTGGAATATGGTAACTGCAACACCAAATGTCAAACTCCAATGGGGGCGATAAACTCTAGTATGCCATTCCACAACATACACCCTCTCACCATCGGGGAATGCCCCAAATATGTGAAATCAAACAGATTAGTCCTTGCGACTGGGCTCAGAAATAGCCCTCAAAGGGAGAGAAGAAGAAAGAAGAGAGGACTATTTGGAGCTATAGCAGGTTTTATAGAGGGAGGATGGCAGGGAATGGTAGATGGTTGGTATGGATACCACCATAGCAATGAGCAGGGGAGTGGATACGCTGCAGACAAAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCGATCATTGACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAATAACTTAGAAAGGAGAATAGAGAATTTAAACAAGAAGATGGAAGACGGATTCCTAGATGTCTGGACTTATAATGCTGAACTTCTGGTTCTCATGGAAAATGAGAGAACTCTAGACTTTCATGACTCAAATGTCAGGAACCTTTACGACAAGGTCCGACTACAGCTTAGGGATAATGCAAAAGAGCTGGGTAACGGTTGTTTCGAGTTCTATCACAAATGTGATGATGAATGCATGGAAAGTGTAAGAAACGGAACGTATGACTACCCGCAGTATTCAGAAGAAGCAAGGCTAAAAAGAGAGGAAATAAGTGGAGTAAAATTGGAATCAATAGGAACTTACCAAATACTGTCAATTTATTCAACAGTGGCAAGTTCCCTAGCGCTGGCAATCATGGTAGCTGGTCTATCTTTATGGATGTGCTCCAATGGTTCGTTACAATGCAGAATT - 'GOOSE_SHANTOU_2216_2005' ATGGAGAAAATAGTGCTTCTTCTTGCAATAATCAGCCTTGTTAAAAGTGATCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACACAATAATGGAAAAGAACGTTACTGTTACACATGCCCAAGACATACTGGAAAAGACACACAATGGGAAGCTCTGCGACTTAGATGGGGTGAAGCCTCTAATTTTGAGAGACTGTAGTGTAGCTGGATGGCTCCTCGGGAACCCAATGTGTGACGAATTCATCAATGTACCGGAATGGTCTTACATAGTGGAGAAGGCCAGTCCAGCCAATGACCTCTGTTACCCAGGTGATTTCAACGATTATGAAGAACTGAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCCCCAAAAGTTCTTGGTCCAATCATGAAGCCTCATCAGGGGTGAGCTCAGCATGTCCATACCTGGGAAAGCCCTCCTTTTTCAGAAATGTGGTATGGCTTATCAAAAAGAACAGTGCATACCCAACAATAAAGAGGAGCTACAATAATACCAACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCGGCAGAGCAGACAAAGCTCTATCAAAACCCAATCACCTATATTTCCGTTGGAACATCAACACTAAACCAGAGATTGGTACCAAAAATAGCTACCAGATCCAAAGTAAACGGGCAAAGTGGAAGGATGGAGTTCTTCTGGACAATTTTAAAACCGAATGATTCAATCAACTTCGAGAGTAATGGAAATTTCATTGCTCCAGAATATGCATACAAAATTGTCAAGAAAGGGGACTCAGCAATTATGAAAAGCGAATTGGAATATGGTAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCGATAAACTCTAGTATGCCATTCCACAACATACACCCTCTCACCATCGGGGAATGCCCCAAATATGTGAAATCAAACAGATTAGTCCTTGCGACTGGGCTCAGAAATAGCCCTCAAAGAGAGAGAAGAAGAAAGAAGAGAGGACTATTTGGAGCTATAGCAGGTTTTATAGAGGGAGGATGGCAGGGAATGGTAGATGGTTGGTATGGATACCACCATAGCAATGAGCAGGGGAGTGGATACGCTGCAGACAAAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCGATCATTGACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAATAACTTAGAAAGGAGAATAGAGAATTTAAACAAGAAGATGGAAGACGGATTCCTAGATGTCTGGACTTATAATGCTGAACTTCTGGTTCTCATGGAAAATGAGAGAACTCTAGACTTTCATGACTCAAATGTCAAGAACCTTTACGACAAGGTCCGACTACAGCTTAGGGATAATGCAAAAGAGCTAGGTAACGGTTGTTTCGAGTTCTATCACAAATGTGATAATGAATGCATGGAAAGTGTAAGAAACGGAACGTATGACTACCCGCAATATTCAGAAGAAGCAAGGCTAAAAAGAGAGGAAATTAGTGGAGTAAAATTGGAATCAATAGGAACTTACCAAATACTGTCAATTTATTCAACAGTGGCAAGTTCCCTAGCGCTGGCAATCATGGTAGCTGGTCTATCTTTATGGATGTGCTCCAATGGTTCGTTACAATGCAGAATT - 'PEREGRINEFALCON_HK_D0028_2004' ATGGAGAAAATAGTGCTTCTTCTTGCAATAGTCAGTCTTGTTAAAAGTGATCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACACAATAATGGAAAAGAATGTTACTGTTACACATGCCCAAGACATACTGGAAAAGACACACAATGGGAAGCTCTGTGACCTAGATGGGGTGAAGCCTCTAATTTTGAGAGATTGTAGTGTCGCTGGATGGCTCCTCGGGAACCCAATGTGTGACGAATTCATCAATGTACCGGAATGGTCTTACATAGTGGAGAAGGCCAGTCCAGCCAATGACCTCTGTTACCCAGGTGATTTCAACGATTATGAAGAACTGAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCCCCAAAAGTTCTTGGTCCAATCATGAAGCCTCATCAGGGGTGAGCTCAGCATGTCCATACCTGGGAAAGCCCTCCTTTTTCAGAAATGTGGTATGGCTTATCAAAAAGAACAGTGCATACCCAACAATAAAGAGGAGCTACAATAATACCAACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCGGCAGAGCAGACAAAGCTCTATCAAAACCCAACCACCTATGTTTCCGTTGGAACATCAACACTAAACCAGAGATTGGTACCAAAAATAGCCACCAGATCCAAAGTAAACGGGCAAAGTGGAAGGATGGAGTTCTTCTGGACAATTTTAAAACCGAATGATGCAATCAACTTCGAGAGTAATGGAAATTTCATTGCTCCAGAATATGCATACAAAATTGTCAAGAAAGGGGACTCAGCAATTATGAAAAGTGAATTGGAATATGGTAACTGCAATACCAAGTGTCAAACTCCAATGGGGGCGATAAACTCTAGTATGCCATTCCACAACATACACCCTCTCACCATCGGGGAATGCCCCAAATATGTGAAATCAAACAGATTAGTCCTTGCGACTGGGCTCAGAAATAGCCCTCAAAGAGAGAGAAGAAGAAAAAAGAGAGGACTATTTGGAGCTATAGCAGGTTTTATAGAGGGAGGATGGCAGGGAATGGTAGATGGTTGGTATGGATACCACCATAGCAATGAGCAGGGGAGTGGATACGCTGCAGACAAAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCGATCATTGACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAATAACTTAGAAAGGAGAATAGAGAATTTAAACAAGAAGATGGAAGACGGATTCCTAGATGTCTGGACTTATAATGCTGAACTTCTGGTTCTCATGGAAAATGAGAGAACTCTAGACTTTCATGACTCAAATGTCAAGAACCTTTACGACAAGGTCCGACTACAGCTTAGGGATAATGCAAAAGAGCTGGGTAACGGTTGTTTCGAGTTCTATCACAAATGTGATAATGAATGTATGGAAAGTGTAAGAAACGGAACGTATGACTACCCGCAGTATTCAGAAGAAGCAAGACTAAAAAGAGAGGAAATAAGTGGAGTAAAATTGGAATCAATAGGAACTTACCAAATACTGTCAATTTATTCAACAGTGGCGAGTTCCCTAGCGCTGGCAATCATGGTAGCTGGTCTATCTTTATGGATGTGCTCC------------------------ - 'CK_HK_WF157_2003' ATGGAGAAAATAGTGCTTCTTCTTGCAATAGTCAGTCTTGTTAAAAGTGATCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACACAATAATGGAAAAGAACGTTACTGTTACACATGCCCAAGACATACTGGAAAAGACCCACAACGGGAAGCTCTGCGACCTAGATGGAGTGAAGCCTCTAATTTTGAGAGATTGTAGTGTAGCTGGATGGCTCCTCGGGAACCCAATGTGTGACGAATTCATCAATGTACCGGAATGGTCTTACATAGTGGAGAAGGCCAGTCCATCCAATGACCTCTGTTACCCAGGGGATTTCAACAATTATGAAGAACTGAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCCCCAAAAGCTCTTGGTCCAATCATGAAGCCTCATCAGGGGTGAGCTCAGCATGTCCATACCTGGGAAAGCCCTCCTTTTTCAGAAATGTGGTATGGCTTATCAAAAAGAACAGTACATACCCAACAATAAAGAGGAGCTACAATAATACCAACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCGGCAGAGCAGATAAAGCTCTATCAAAACCCAACCACCTATATTTCCGTTGGAACATCAACACTAAACCAGAGATTGGTACCAAAAATAGCTACTAGATCCAAAGTAAACGGGCAAAGTGGAAGGATGGAGTTCTTCTGGACAATTTTAAAACCGAATGATGCAATCAACTTCGAGAGTAATGGAAATTTCATTGCTCCAGAATATGCATACAAAATTGTCAAGAAAGGGGACTCAGCAATTATGAAAAGTGAATTGGAATATGGTAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCGATAAACTCTAGTATGCCCTTCCACAACATACACCCTCTCACCATCGGGGAATGCCCCAAATATGTGAAATCAAACAGACTAGTCCTTGCGACTGGGCTCAGAAATAGCCCTCAAAGAGAGAGAAGAAGAAAAAAGAGAGGACTATTTGGAGCTATAGCGGGTTTTATAGAGGGAGGATGGCAGGGAATGGTAGATGGTTGGTATGGATACCACCATAGCAATGAGCAGGGGAGTGGATACGCTGCAGACAAAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCGATCATTGACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAATAACTTAGAAAGGAGAATAGAGAATTTAAACAAGAAGATGGAAGACGGATTCCTAGATGTCTGGACTTATAATGCTGAACTTCTAGTTCTCATGGAAAATGAGAGAACTCTAGACTTTCATGACTCAAATGTCAAGAACCTTTACGACAAGGTCCGACTACAGCTTAGGGATAATGCAAAAGAGCTGGGTAACGGTTGTTTCGAGTTCTATCACAAATGTGATAATGAATGTATGGAAAGTGTAAGAAACGGAACGTATGACTACTCGCAGTATTCAGAAGAAGCAAGACTAAAAAGAGAGGAAATAAGTGGAGTAAAATTGGAATCAATAGGAACTTACCAAATACTGTCAATTTATTCAACAGTGGCGAGTTCCCTAGCACTGGCAATCATGGTAGCTGGTCTATCTTTATGGATGTGCTCCAATGGTTCGTTACAATGT------ - 'HUMAN_VIETNAM_CL105_2005' ATGGAGAAAATAGTGCTTCTTTTTGCGATAGTCAGTCTTGTTAAAAGTGATCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACACAATAATGGAAAAGAACGTTACTGTTACACATGCCCAAGACATACTGGAAAAGACACACAACGGGAAGCTCTGCGATCTAGATGGAGTGAAGCCTCTAATTTTGAGAGATTGTAGTGTAGCTGGATGGCTACTCGGAAACCCAATGTGTGACGAATTCATCAATGTGCCGGAATGGTCTTACATAGTGGAGAAGGTCAATCCAGTCAATGACCTCTGTTACCCAGGGGTTTTCAATGACTATGAAGAATTGAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCCCCAAAAGTTCTTGGTCCAGTCATGAAGCCTCATTAGGGGTGAGCTCAGTATGTCCATACCAGGGAAAGTCCTCCTTTTTCAGAAATGTGGTATGGCTTATCAAAAAGAACAGTACATACCCAACAATAAAGAGGAGCTACAATAATACCAACCAAGAAGATCTTTTGGTAATATGGGGGATTCATCATCCTAATGATGCGGCAGAGCAGATAAAGCTCTATCAAAACCCAACCACCTATATTTCCGTTGGGACATCAACACTAAACCAGAGATTGGTACCAAGAATAGCTACTAGATCCAAAGTAAACGGGCAAAGTGGGAGGATGGAGTTCTTCTGGACAATTTTAAAACCGAATGATGCAATCAACTTCGAGAGTAATGGAAATTTCATTGCTCCAGAATATGCATACAAGATTGTCAAGAAAGGGGACTCAACAATTATGAAAAGTGAATTGGAATATGGTAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCGATAAACTCTAGTATGCCATTCCACAATATACACCCTCTCACCATCGGGGAATGCCCCAAATATGTGAAATCAAACAGATTAGTCCTTGCGACTGGGCTCAGAAATAGCCCTCAAAAAGAGAGAAGAAGAAAAAAGAGAGGATTATTTGGAGCTATAGCAGGTTTTATAGAGGGAGGATGGCAGGGAATGGTAGATGGTTGGTATGGGTACCACCATAGCAATGAGCAGGGGAGTGGGTACGCTGCAGACAAAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCGATCATTGACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAACAACTTAGAAAGGAGAATAGAGAATTTAAACAAGAAGATGGAAGACGGGTTCCTAGATGTCTGGACTTATAATGCTGAACTTCTGGTTCTCATGGAAAATGAGAGAACTCTAGACTTTCATGACTCAAATGTCAAGAACCTTTACGACAAGGTCCGACTACAGCTTAGGGATAATGCAAAGGAGCTGGGTAACGGTTGTTTCGAGTTCTATCATAAATGTGATAATGAATGTATGGAAAGTGTAAGAAACGGAACGTATGACTACCCGCAGTATTCAGAAGAAGCAAGATTAAAAAGAGAGGAAATAAGTGGAGTAAAATTGGAATCAATAGGAATTTACCAAATACTGTCAATTTATTCTACAGTGGCGAGTTCCCTAGCACTGGCAATCATGATAGCTGGTCTATCCTTATGGATGTGCTCCAATGGGTCGTTACAA--------- - 'DUCK_VIETNAM_376_2005' ATGGAGAAAATAGTGCTTCTTTTTGCGATAGTCAGTCTTGTTAAAAGTGATCAGATTTGCATTGGTTACCATGCAAACAACTCAACAGAGCAGGTTGACACAATAATGGAAAAGAACGTTACTGTTACACATGCCCAAGACATACTGGAAAAGACACACAACGGGAAGCTCTGCGATCTAGATGGAGTGAAGCCTCTAATTTTGAGAGATTGTAGTGTAGCTGGATGGCTCCTCGGAAACCCAATGTGTGACGAATTCATCAATGTGCCGGAATGGTCTTACATAGTGGAGAAGGCCAATCCAGTCAATGACCTCTGTTACCCAGGGGATTTCAATGACTATGAAGAATTGAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCCCCAAAAGTTCTTGGTCCAGTCATGAAGCCTCATTAGGAGTGAGCTCAGCATGTCCATACCAGGGAAATCCCTCCTTTTTCAGAAATGTGGTATGGCTTATCAAAAAGAACAGTACATACCCAACAATAAAGAGGAACTACAATAATACCAACCAAGAAGATCTTTTGGTAATGTGGGGGATTCACCATCCTAATGATGCGGCAGAGCAGACAAAGCTCTATCAAAACCCAACCACCTATATTTCCGTTGGGACATCAACACTAAACCAGAGATTGGTACCAAGAATAGCTACTAGATCCAAAATAAACGGGCAAAGTGGGAGGATAGAGTTCTTCTGGACAATTTTAAAACCGAATGATGCAATCAACTTCGAGAGTAATGGAAATTTCATTGCTCCAGAATATGCATACAAAATTGTCAAGAAAGGGGACTCAACAATTATGAAAAGTGAATTGGAATATGGTAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCGATAAACTCTAGTATGCCATTCCACAATATACATCCTCTCACCATCGGGGAGTGCCCCAAATATGTGAAATCAAACAGATTAGTCCTTGCGACTGGGCTCAGAAATAGCCCTCAAAGAGAGAGAAGAAGAAAAAAGAGAGGATTATTTGGAGCTATAGCAGGTTTTATAGAAGGAGGATGGCAAGGAATGGTAGATGGTTGGTATGGGTACCACCATAGCAATGAGCAGGGAAGTGGGTACGCTGCAGACAAAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCGATCATTGACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAACAACTTAGAAAGGAGAATAGAGAATTTAAACAAGAAGATGGAAGACGGGTTCCTAGATGTCTGGACTTATAATGCTGAACTTCTGGTTCTCATGGAAAATGAGAGAACTCTAGACTTTCATGACTCAAATGTCAAGAACCTTTACGACAAGGTCCGACTACAGCTTAGAGATAATGCAAAGGAGCTGGGTAACGGTTGTTTCGAGTTCTATCATAAATGTGATAATGAATGTATGGAAAGTGTAAGAAACGGAACGTATGACTACCCGCAGTATTCAGAAGAAGCAAGATTAAAAAGAGAGGAAATAAGTGGAGTAAAATTGGAATCAATAGGAATTTACCAAATACTGTCAATTTATTCTACTGTGGCGAGTTCCCTAGCACTGGCAATCATGGTAGCTGGTCTATCCTTATGGATGTGCTCCAATGGGTCGTTACAATGCAGA--- - 'VIETNAM_3062_2004' ATGGAGAAAATAGTGCTTCTTTTTGCAATAGTCAGTCTTGTTAAAAGTGATCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACACAATAATGGAAAAGAACGTTACTGTTACACATGCCCAAGACATACTGGAAAAGACACACAACGGGAAGCTCTGCGATCTAGATGGAGTGAAGCCTCTAATTTTGAGAGATTGTAGTGTAGCTGGATGGCTCCTCGGAAACCCAATGTGTGACGAATTCATCAATGTGCCGGAATGGTCTTACATAGTGGAGAAGGCCAATCCAGTCAATGACCTCTGTTACCCAGGGGATTTCAATGACTATGAAGAATTGAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCCCCAAAAGTTCTTGGTCCAGTCATGAAGCCTCATTAGGAGTGAGCTCAGCATGTCCATACCAGGGAAAGTCCTCCTTTTTCAGAAATGTGGTATGGCTTATCAAAAAGAACAGTACATACCCAACAATAAAGAGGAGCTACAATAATACCAACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCGGCAGAGCAGACAAAGCTCTATCAAAACCCAACCACCTATATTTCCGTTGGGACATCAACACTAAACCAGAGGTTGGTACCAAGAATAGCTACTAGATCCAAAGTAAACGGGCAAAGTGGAAGGATGGAGTTCTTCTGGACAATTTTAAAACCGAATGATGCAATCAACTTCGAGAGTAATGGAAATTTCATTGCTCCAGAATATGCATACAAAATTGTCAAGAAAGGGGACTCAACAATTATGAAAAGTGAATTGGAATATGGTAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCGATAAACTCTAGTATGCCATTCCACAATATACACCCTCTCACCATCGGGGAATGCCCCAAATATGTGAAATCAAACAGATTAGTCCTTGCGACTGGGCTCAGAAATAGCCCTCAAAGAGAGAGAAGAAGAAAAAAGAGAGGATTATTTGGAGCTATAGCAGGTTTTATAGAGGGAGGATGGCAGGGAATGGTAGATGGTTGGTATGGGTACCACCATAGCAATGAGCAGGGGAGTGGGTACGCTGCAGACAAAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCGATCATTGACAAAATGAACACTCAATTTGAGGCCGTTGGAAGGGAATTTAACAACTTAGAAAGGAGAATAGAGAATTTAAACAAGAAGATGGAAGACGGGTTCCTAGATGTCTGGACTTATAATGCTGAACTTCTGGTTCTCATGGAAAATGAGAGAACTCTAGACTTTCATGACTCAAATGTCAAGAACCTTTACGACAAGGTCCGACTACAGCTTAGGGATAATGCAAAGGAGCTGGGTAACGGTTGTTTCGAGTTCTATCATAAATGTGATAATGAATGTATGGAAAGTGTAAGAAACGGAACGTATGACTACCCGCAGTATTCAGAAGAAGCAAGACTAAAAAGAGAGGAAATAAGTGGAGTAAAATTGGAATCAATAGGAATTTACCAAATACTGTCAATTTATTCTACAGTGGCGAGTTCCCTAGCACTGGCAATCATGGTAGCTGGTCTATCCTTATGGATGTGCTCCAATGGGTCG--------------- - 'MALLARD_VIETNAM_16_2003' ATGGAGAAAATAGTGCTTCTTTTTGCAATAGTCAGTCTTGTTAAAAGTGATCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACACAATAATGGAAAAGAACGTTACTGTTACACATGCCCAAGACATACTGGAAAAGACACACAACGGGAAGCTCTGCGATCTAGATGGAGTGAAGCCTCTAATTTTGAGAGATTGTAGTGTAGCTGGATGGCTCCTCGGAAACCCAATGTGTGACGAATTCATCAATGTGCCGGAATGGTCTTACATAGTGGAGAAGGCCAATCCAGTCAATGACCTCTGTTACCCAGGGGATTTCAATGAATATGAAGAATTGAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCCCCAAAAGTTCTTGGTCCAGTCATGAAGCCTCATTAGGGGTGAGCTCAGCATGTCCATACCAGGGAAAGTCCTCCTTTTTCAGAAATGTGGTATGGCTTGTCAAAAAGAACAGTACATACCCAACAATAAAGAGGAGCTACAATAATACCAACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCGGCAGAGCAGACAAAGCTCTATCAAAATCCAACCACCTACATTTCCGTTGGGACATCAACACTAAACCAGAGATTGGTACCAAGAATAGCTACTAGATCCAAAGTAAACGGGCAAAGTGGAAGGATGGAGTTCTTCTGGACAATTTTAAAACCGAATGATGCAATCAACTTCGAGAGTAATGGAAATTTCATTGCTCCAGAATATGCATACAAAATTGTCAAGAAAGGGGACTCAACAATTATGAAAAGTGAATTGGAATATGGTAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCGATAAACTCTAGTATGCCATTCCACAATATACACCCCCTCACCATCGGGGAATGCCCCAAATATGTGAAATCAAACAGATTAGTCCTTGCGACTGGGCTCAGAAATAGCCCTCAAAGAGAGAGAAGAAGAAAAAAGAGAGGATTATTTGGAGCTATAGCAGGTTTTATAGAGGGAGGATGGCAAGGAATGGTAGATGGTTGGTATGGGTACCACCATAGCAATGAGCAGGGGAGTGGGTACGCTGCAGACAAAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCGATCATTGACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAACAACTTAGAAAGGAGAATAGAGAATTTAAACAAGAAGATGGAAGACGGGTTCCTAGATGTCTGGACTTATAATGCTGAACTTCTGGTTCTCATGGAAAATGAGAGAACTCTAGACTTTCATGACTCAAATGTCAAGAACCTTTACGACAAGGTCCGACTACAGCTTAGGGATAATGCAAAGGAGCTGGGTAACGGTTGTTTCGAGTTCTATCATAAATGTGATAATGAATGTATGGAAAGTGTAAGAAACGGAACGTATGACTACCCGCAGTATTCAGAAGAAGCAAGACTAAAAAGAGAGGAAATAAGTGGAGTAAAATTGGAATCAATAGGAATTTACCAAATACTGTCAATTTATTCTACAGTGGCGAGTTCCCTAGCACTGGCAATCATGGTAGCTGGTCTATCCTTATGGATGTGCTCCAATGGGTCGTTACAATGCAGA--- - 'CHICKEN_THAILAND_KANCHANABURI_CK_160_2005' ATGGAGAAAATAGTGCTTCTTTTTGCAATAGTCAGTCTTGTTAAAAGTGATCAGATTTGCATTGGTTACCATGCAAACAACTCAACAGAGCAGGTTGACACAATAATGGAAAAGAACGTTACTGTTACACATGCCCAAGACATACTGGAAAAGACACACAACGGGAAGCTCTGTGATCTAGATGGAGTGAAGCCTCTAATTTTGAGAGATTGTAGTGTAGCTGGATGGCTCCTTGGAAACCCAATGTGTGATGAATTCATCAATGTGCCGGAATGGTCTTACATAGTGGAGAAGGCCAATCCAGCCAATGACCTCTGTTACCCAGGGGATTTCAATGACTATGAAGAATTGAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCCCCAAAAGTTCTTGGTCCAGTCATGAAGCCTCATTAGGAGTGAGCTCAGCATGTCCATATCAGGGAAAGTCCTCCTTTTTCAGAAATGTGGTATGGCTTATCAAAAAGAACAGTACATACCCAACAATAAAGAGGAGCTACAATAATACCAACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCGGCAGAGCAGACAAAGCTCTATCAAAACCCAACCACCTACATTTCCGTTGGGACATCAACACTAAACCAGAGATTGGTACCAAGAATAGCTACTAGATCCAAAGTAAACGGGCAAAGTGGAAGGATGGAGTTCTTCTGGACAATTTTAAAACCGAATGATGCAATCAACTTCGAGAGTAATGGAAATTTCATTGCTCCAGAATATGCATACAAAATTGTCAAGAAAGGGGACTCAACAATTATGAAAAGTGAATTGGAATATGGTAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCGATAAACTCTAGTATGCCATTCCACAATATACACCCTCTCACCATCGGGGAATGCCCCAAATATGTGAAATCAAACAGATTAGTCCTTGCGACTGGACTCAGAAATAGCCCTCAAAGAGAGAAAAGAAGAAAAAAGAGAGGATTATTTGGAGCTATAGCAGGTTTTATAGAGGGAGGATGGCAGGGAATGGTAGATGGTTGGTATGGGTACCACCATAGCAATGAGCAGGGGAGTGGGTACGCTGCAGACAAAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCGATCATTGACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAACAACTTAGAAAGGAGAATAGAGAATTTAAACAAGAAGATGGAAGACGGGTTCCTAGATGTCTGGACTTATAATGCTGAACTTCTGGTTCTCATGGAAAATGAGAGAACTCTAGACTTTCATGACTCAAATGTCAAGAACCTTTACGACAAGGTCCGACTACAGCTTAGGGATAATGCAAAGGAGCTGGGTAACGGTTGTTTCGAGTTCTATCATAAATGTGATAATGAATGTATGGAAAGTGTAAGGAACGGAACGTATGACTACCCGCAGTATTCAGAAGAAGCAAGACTAAAAAGAGAGGAAATAAGTGGAGTAAAATTGGAATCAATAGGAATTTACCAAATACTGTCAATTTATTCTACAGTAGCGAGTTCCCTAGCACTGGCAATCATGGTAGCTGGTCTATCCTTATGGATGTGCTTCAATGGGTCGTTACAATGCAGAATT - 'DUCK_VIETNAM_272_2005' ATGGAGAAAATAGTGCTTCTTTTTGCAATAGTCAGTCTTGTTAAAAGTGATCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACACAATAATGGAAAAGAACGTTACTGTTACACATGCCCAAGACATACTGGAAAAGACACACAACGGGAAGCTCTGCGATCTAGATGGAGTGAAGCCTCTAATTTTGAGAGATTGTAGTGTAGCTGGATGGCTCCTTGGAAATCCAATGTGTGACGAATTCATCAATGTGCCGGAATGGTCTTACATAGTGGAGAAGGCCAATCCAGTCAATGACCTCTGTTACCCAGGGGATTTCAATGACTATGAAGAATTGAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCCCCAAAAGTTCTTGGCCCAGTCATGAAGCCTCATTAGGGGTGAGCTCAGCATGTCCATACCAGGGAAGGTCCTCCTTTTTCAGAAATGTGGTATGGCTTATCAAAAAGAACAGTACATATCCAACAATAAAGAGGAGCTACAATAATACCAACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCGGCAGAGCAGACAAAGCTCTATCAAAACCCAACCACCTATATTTCCGTTGGGACATCAACACTAAACCAGAGATTGATACCAAGAATAGCTACTAGATCCAAAGTAAACGGGCAAAGTGGAAGGATGGAGTTCTTCTGGACAATTTTAAAACCGAATGATGCAATCAATTTCGAGAGTAATGGAAATTTCATTGCCCCAGAATACGCATACAAAATTGTCAAGAAAGGGGACTCAACAATTATGAAAAGTGAATTGGAATATGGTAACTGCAACACCAAGTGTCAAACACCAATGGGGGCGATAAATTCTAGTATGCCATTCCACAATATACACCCTCTCACCATCGGGGAATGCCCCAAATATGTGAAATCAAACAGATTAGTCCTTGCGACTGGGCTCAGAAATAGCCCTCAAAGAGAGAGAAGA---AAAAAGAGAGGATTATTTGGAGCTATAGCAGGTTTTATAGAGGGGGGATGGCAGGGAATGGTAGATGGTTGGTATGGGTACCACCATAGCAATGAACAGGGGAGTGGGTACGCTGCAGACAAAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCGATCATTGACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAACAACTTAGAAAGGAGAATAGAGAATTTAAACAAGAAGATGGAAGACGGGTTCCTAGATGTCTGGACTTATAATGCTGAACTTCTGGTTCTCATGGAAAATGAGAGAACTCTAGACTTTCATGACTCAAATGTCAAGAACCTTTACGACAAGGTCCGACTACAGCTTAGGGATAATGCAAAGGAGCTGGGTAACGGTTGTTTCGAGTTCTATCATAAATGTGATAATGAATGTATGGAAAGTGTAAGAAATGGAACGTATGACTACCCGCAGTATTCAGAAGAAGCAAAACTAAAAAGAGAGGAAATAAGTGGAGTAAAATTGGAATCAATAGGAATTTACCAAATACTGTCAATTTATTCCACAGTAGCGAGTTCCCTAGCACTGGCAATCATGGTAGCTGGTCTATCCTTATGGATGTGCTCCAATGGGTCGTTACAATGCAGA---; -END; - -BEGIN ASSUMPTIONS; - CHARSET span_1 = 1-697; - CHARSET span_2 = 698-1167; - CHARSET span_3 = 1168-1698; -END; -BEGIN TREES; - TREE tree_1 = ((((((((TREESPARROW_HENAN_1_2004:0.0145769244137292,TREESPARROW_HENAN_2_2004:1e-10)Node7:0.005925131124384257,CHICKEN_HEBEI_326_2005:0.03148335967389677)Node6:0.006520820816328921,((DUCK_GUANGZHOU_20_2005:0.009483822383439561,(GOOSE_SHANTOU_2216_2005:0.007374093130581441,PEREGRINEFALCON_HK_D0028_2004:0.007242107381463219)Node14:0.0007056004954733679)Node12:0.00710363602212726,CK_HK_WF157_2003:0.00757594740908166)Node11:0.004227199989057285)Node5:0.001170889307235767,TREESPARROW_HENAN_3_2004:0.008919169512223372)Node4:0.0008380584919822353,(TREESPARROW_HENAN_4_2004:0.006708184198226799,((CHICKEN_HONGKONG_915_97:1e-10,(HONGKONG_97_98:0.006483231977175029,HONGKONG_538_97:1e-10)Node24:0.0003031375872603963)Node22:0.0001037022453470389,(GOOSE_HONGKONG_W355_97:1e-10,DUCK_HONGKONG_Y283_97:1e-10)Node27:0.002891685438446985)Node21:0.02744187404194088)Node19:0.002944759819938243)Node3:0.001672904530995233,SWINE_ANHUI_2004:0.01260983958335299)Node2:0.01303612329048956,DUCK_VIETNAM_272_2005:0.008088746451854261)Node1:0.0006545914783555439,((HUMAN_VIETNAM_CL105_2005:0.01105269263722943,DUCK_VIETNAM_376_2005:0.006417734235732284)Node33:0.002021990910251294,VIETNAM_3062_2004:0.002304874937323682)Node32:0.0006817702832121299,(MALLARD_VIETNAM_16_2003:0.005709114871229771,CHICKEN_THAILAND_KANCHANABURI_CK_160_2005:0.008864540916547606)Node37:9.336374870077841e-05); - TREE tree_2 = ((((((TREESPARROW_HENAN_1_2004:0.002586740118529802,TREESPARROW_HENAN_3_2004:0.003828953390398881)Node5:0.00187457851284572,TREESPARROW_HENAN_4_2004:0.0002656521581222459)Node4:0.008299727091877812,((CHICKEN_HEBEI_326_2005:0.01484958179784225,(SWINE_ANHUI_2004:1e-10,TREESPARROW_HENAN_2_2004:0.002239639293515125)Node12:0.01361271232984685)Node10:0.01278549184522065,((CHICKEN_HONGKONG_915_97:1e-10,GOOSE_HONGKONG_W355_97:1e-10)Node16:0.001326679361120118,((DUCK_HONGKONG_Y283_97:0.0006676977779578139,HONGKONG_538_97:1e-10)Node20:0.0006271503105586317,HONGKONG_97_98:0.004109899012531796)Node19:0.001653355437332724)Node15:0.01224714418221361)Node9:0.003429034672045344)Node3:0.005031763140085913,(((DUCK_GUANGZHOU_20_2005:0.004262245747717084,GOOSE_SHANTOU_2216_2005:0.004308213533754201)Node26:0.002157320455556664,CK_HK_WF157_2003:0.00647028357035998)Node25:4.000752717957338e-05,PEREGRINEFALCON_HK_D0028_2004:0.002090471815463569)Node24:0.003260422306103818)Node2:0.00707214212698231,DUCK_VIETNAM_272_2005:0.01454290899825338)Node1:0.0007147389821184919,(((HUMAN_VIETNAM_CL105_2005:0.004710041013757377,DUCK_VIETNAM_376_2005:0.01496207542884359)Node34:0.001166828623060772,MALLARD_VIETNAM_16_2003:0.003061545152147631)Node33:0.001134022328667363,VIETNAM_3062_2004:1e-10)Node32:0.0002767006572468676,CHICKEN_THAILAND_KANCHANABURI_CK_160_2005:0.00405819047265216); - TREE tree_3 = (TREESPARROW_HENAN_1_2004:1.793736422068138e-05,((TREESPARROW_HENAN_3_2004:0.005512611253559831,TREESPARROW_HENAN_4_2004:0.000171467489882283)Node3:0.001655366533442949,(CHICKEN_HEBEI_326_2005:0.005483900345571787,(SWINE_ANHUI_2004:0.006320038544899231,(((CHICKEN_HONGKONG_915_97:1e-10,HONGKONG_97_98:1e-10)Node12:0.001309621960005619,(GOOSE_HONGKONG_W355_97:1e-10,HONGKONG_538_97:1e-10)Node15:0.0005799496924062597)Node11:0.01406566295495963,((DUCK_HONGKONG_Y283_97:999.9836725287659,(((HUMAN_VIETNAM_CL105_2005:0.002027831968935447,DUCK_VIETNAM_376_2005:0.003754856650868615)Node23:0.00177604858958343,(VIETNAM_3062_2004:0.002068037509299944,MALLARD_VIETNAM_16_2003:1e-10)Node26:0.0001623690336813484)Node22:0.0008290773242978894,(CHICKEN_THAILAND_KANCHANABURI_CK_160_2005:0.004523465945045592,DUCK_VIETNAM_272_2005:0.005056282226890766)Node29:0.001128740164377167)Node21:0.01150309854222087)Node19:0.001994389759866116,(((DUCK_GUANGZHOU_20_2005:0.003847909099661096,GOOSE_SHANTOU_2216_2005:0.005686200296849465)Node34:0.006130725555048717,PEREGRINEFALCON_HK_D0028_2004:8.387427766777967e-05)Node33:0.0009906361822363255,CK_HK_WF157_2003:0.005714641337818262)Node32:0.004952071733007253)Node18:0.002028752021615747)Node10:0.004186888950236505)Node8:0.002350770416932014)Node6:0.002154523112988181)Node2:0.0002651492563879275,TREESPARROW_HENAN_2_2004:0.007562549920247083); -END;
--- a/test-data/meme-in1.fa Mon Feb 17 14:53:45 2020 -0500 +++ b/test-data/meme-in1.fa Thu Feb 20 18:11:41 2020 -0500 @@ -1,1 +1,1 @@ ->HUMAN_VIETNAM_CL105_2005 ATGGAGAAAATAGTGCTTCTTTTTGCGATAGTCAGTCTTGTTAAAAGTGA TCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACA CAATAATGGAAAAGAACGTTACTGTTACACATGCCCAAGACATACTGGAA AAGACACACAACGGGAAGCTCTGCGATCTAGATGGAGTGAAGCCTCTAAT TTTGAGAGATTGTAGTGTAGCTGGATGGCTACTCGGAAACCCAATGTGTG ACGAATTCATCAATGTGCCGGAATGGTCTTACATAGTGGAGAAGGTCAAT CCAGTCAATGACCTCTGTTACCCAGGGGTTTTCAATGACTATGAAGAATT GAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCC CCAAAAGTTCTTGGTCCAGTCATGAAGCCTCATTAGGGGTGAGCTCAGTA TGTCCATACCAGGGAAAGTCCTCCTTTTTCAGAAATGTGGTATGGCTTAT CAAAAAGAACAGTACATACCCAACAATAAAGAGGAGCTACAATAATACCA ACCAAGAAGATCTTTTGGTAATATGGGGGATTCATCATCCTAATGATGCG GCAGAGCAGATAAAGCTCTATCAAAACCCAACCACCTATATTTCCGTTGG GACATCAACACTAAACCAGAGATTGGTACCAAGAATAGCTACTAGATCCA AAGTAAACGGGCAAAGTGGGAGGATGGAGTTCTTCTGGACAATTTTAAAA CCGAATGATGCAATCAACTTCGAGAGTAATGGAAATTTCATTGCTCCAGA ATATGCATACAAGATTGTCAAGAAAGGGGACTCAACAATTATGAAAAGTG AATTGGAATATGGTAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCG ATAAACTCTAGTATGCCATTCCACAATATACACCCTCTCACCATCGGGGA ATGCCCCAAATATGTGAAATCAAACAGATTAGTCCTTGCGACTGGGCTCA GAAATAGCCCTCAAAAAGAGAGAAGAAGAAAAAAGAGAGGATTATTTGGA GCTATAGCAGGTTTTATAGAGGGAGGATGGCAGGGAATGGTAGATGGTTG GTATGGGTACCACCATAGCAATGAGCAGGGGAGTGGGTACGCTGCAGACA AAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCG ATCATTGACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAA CAACTTAGAAAGGAGAATAGAGAATTTAAACAAGAAGATGGAAGACGGGT TCCTAGATGTCTGGACTTATAATGCTGAACTTCTGGTTCTCATGGAAAAT GAGAGAACTCTAGACTTTCATGACTCAAATGTCAAGAACCTTTACGACAA GGTCCGACTACAGCTTAGGGATAATGCAAAGGAGCTGGGTAACGGTTGTT TCGAGTTCTATCATAAATGTGATAATGAATGTATGGAAAGTGTAAGAAAC GGAACGTATGACTACCCGCAGTATTCAGAAGAAGCAAGATTAAAAAGAGA GGAAATAAGTGGAGTAAAATTGGAATCAATAGGAATTTACCAAATACTGT CAATTTATTCTACAGTGGCGAGTTCCCTAGCACTGGCAATCATGATAGCT GGTCTATCCTTATGGATGTGCTCCAATGGGTCGTTACAA--------- >CHICKEN_HEBEI_326_2005 ATGGAGAGAATAGTGCTTCTTCTTGCAATAATCGGTCTTGTTAAAAGTGA TCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACA CAATAATGGAAAAGAACGTTACTGTTACACATGCTCAAGACATACTGGAG AAGACACACAACGGGAAGCTCTGCAACCCAGATGGAGTGAAGCCTCTAAT TTTGAAAGATTGTAGTGTAGCTGGATGGCTCCTCGGAAACCCAATGTGTG ACGAATTTATCAATGTGCCGGAATGGTCTTACATAGTGGAGAAGGCCAGT CCAGCCAATGGCCTCTGTTACCCAGGGGATTTCAATGACTATGAAGAACT GAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCC CCAAAAGTTCTTGGTCCGATCATGGAGCCTCATCAGGGGTGAGCTCAGCA TGTTCCTATCTGGGGAAGCCCTCCTTTTTCAGAAATGTGGTATGGCTTAT CAAAAAGAATAATACATACCCACCAATAAAGGTGAGCTACAACAATACCA ACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCCAATGATGAG GCAGAGCAGATAAAGATCTATCAAAACCCAACCACCTATATTTCCGTTGG AACATCAACACTAAACCAGAGATTGGTACCAAAAATAGCTACTAGATCCA AAGTAAACGGGCAAAGTGGAAGAATGGAGTTCTTCTGGACAATTTTAAAG CCGAATGATGCTATCAATTTCGATAGTAATGGAAATTTCATTGCTCCAGA ATATGCATACAAAATTGTCAAGAAAGGGGACTCAGCGATTATGAAAAGTG AATTGGAATATGGCAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCG ATAAATTCTAGTATGCCATTCCACAACATACACCCTCTCACCGTCGGGGA ATGCCCCAAATATGTGAAATCAAACAGATTAGTCCTCGCGACTGGACTCA GAAATGCCCCTCAAAGAGAGGGAGGAAGAAAAAAGAGAGGACTATTTGGA GCCATAGCAGGGTTTATAGAGGGAGGATGGCAGGGAATGGTAGATGGTTG GTATGGGTACCACCATAGCAATGAGCAGGGGAGTGGATACGCTGCAGACA AAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCG ATCATTGACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAA TAACTTAGAAAGGAGAATAGAAAATTTAAACAAGAAGATGGAGGACGGAT TCCTAGATGTCTGGACTTATAACGCTGAACTTCTGGTTCTCATGGAAAAT GAGAGAACTCTAGACTTTCATGACTCAAATGTCAAGAACCTTTACGAAAA GGTCCGACTACAGCTTAGGGATAATGCAAAGGAGCTGGGTAACGGTTGTT TCGAGTTCTATCACAAATGTGATAATGAATGTATGGAAAGTGTAAAAAAC GGAACGTATGACTACCCGCAGTATTCAGAAGAAGCAAGACTAAACAGAGA GGAAATAAGTGGAGTAAAATTGGAATCAATGGGAACTTACCAAATACTGT CAATTTATTCAACAGTGGCGAGTTCCCTAGCATTGGCAATCATGGTAGCT GGTCTATCTTTATGGATGTGCTCCAATGGATCGTTACAATGCAGAATT >CHICKEN_HONGKONG_915_97 ATGGAGAAAATAGTGCTTCTTCTTGCAACAGTCAGTCTTGTTAAAAGTGA TCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACA CAATAATGGAAAAGAATGTTACTGTTACACATGCCCAAGACATACTGGAA AGGACACACAACGGGAAGCTCTGCGATCTAAATGGAGTGAAACCTCTCAT TTTGAGGGATTGTAGTGTAGCTGGATGGCTCCTCGGAAACCCTATGTGTG ACGAATTCATCAATGTGCCGGAATGGTCTTACATAGTGGAGAAGGCCAGT CCAGCCAATGACCTCTGTTATCCAGGGAATTTCAACGACTATGAAGAACT GAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCC CCAAAAGTTCTTGGTCCAATCATGATGCCTCATCAGGGGTGAGCTCAGCA TGTCCATACCTTGGGAGGTCCTCCTTTTTCAGAAATGTGGTATGGCTTAT CAAAAAGAACAGTGCATACCCAACAATAAAGAGGAGCTACAATAATACCA ACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCG GCAGAGCAGACAAAGCTCTATCAAAATCCAACCACCTACATTTCCGTTGG AACATCAACACTGAACCAGAGATTGGTTCCAGAAATAGCTACTAGACCCA AAGTAAACGGGCAAAGTGGAAGAATGGAGTTCTTCTGGACAATTTTAAAG CCGAATGATGCCATCAATTTCGAGAGTAATGGAAATTTCATTGCCCCAGA ATATGCATACAAAATTGTCAAGAAAGGGGACTCAACAATTATGAAAAGTG AATTGGAATATGGTAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCG ATAAACTCTAGTATGCCATTCCACAACATACACCCCCTCACCATCGGGGA ATGCCCCAAATATGTGAAATCAAACAGATTAGTTCTTGCGACTGGACTCA GAAATACCCCTCAAAGGGAGAGAAGAAGAAAAAAGAGAGGACTATTTGGA GCTATAGCAGGTTTTATAGAGGGAGGATGGCAGGGCATGGTAGATGGTTG GTATGGGTACCACCATAGCAATGAGCAGGGGAGTGGATACGCTGCAGACA AAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCG ATCATTAACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAA TAACTTAGAAAGGAGAATAGAGAATTTAAACAAGAAAATGGAAGACGGAT TCCTAGATGTCTGGACTTACAATGCTGAACTTCTGGTTCTCATGGAAAAT GAGAGAACTCTCGACTTTCATGACTCAAATGTCAAGAACCTTTACGACAA GGTCCGACTACAGCTTAGGGATAATGCAAAGGAACTGGGTAATGGTTGTT TCGAATTCTATCACAAATGTGATAATGAATGTATGGAAAGTGTAAAAAAC GGAACGTATGACTACCCGCAGTATTCAGAAGAAGCAAGACTAAACAGAGA GGAAATAAGTGGAGTAAAATTGGAATCAATGGGAACTTACCAAATACTGT CAATTTATTCAACAGTGGCGAGTTCCCTAGCACTGGCAATCATGGTAGCT GGTCTATCTTTATGGATGTGCTCCAATGGATCGTTACAATGCAGAATT >HUMAN_VIETNAM_3062_2004 ATGGAGAAAATAGTGCTTCTTTTTGCAATAGTCAGTCTTGTTAAAAGTGA TCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACA CAATAATGGAAAAGAACGTTACTGTTACACATGCCCAAGACATACTGGAA AAGACACACAACGGGAAGCTCTGCGATCTAGATGGAGTGAAGCCTCTAAT TTTGAGAGATTGTAGTGTAGCTGGATGGCTCCTCGGAAACCCAATGTGTG ACGAATTCATCAATGTGCCGGAATGGTCTTACATAGTGGAGAAGGCCAAT CCAGTCAATGACCTCTGTTACCCAGGGGATTTCAATGACTATGAAGAATT GAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCC CCAAAAGTTCTTGGTCCAGTCATGAAGCCTCATTAGGAGTGAGCTCAGCA TGTCCATACCAGGGAAAGTCCTCCTTTTTCAGAAATGTGGTATGGCTTAT CAAAAAGAACAGTACATACCCAACAATAAAGAGGAGCTACAATAATACCA ACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCG GCAGAGCAGACAAAGCTCTATCAAAACCCAACCACCTATATTTCCGTTGG GACATCAACACTAAACCAGAGGTTGGTACCAAGAATAGCTACTAGATCCA AAGTAAACGGGCAAAGTGGAAGGATGGAGTTCTTCTGGACAATTTTAAAA CCGAATGATGCAATCAACTTCGAGAGTAATGGAAATTTCATTGCTCCAGA ATATGCATACAAAATTGTCAAGAAAGGGGACTCAACAATTATGAAAAGTG AATTGGAATATGGTAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCG ATAAACTCTAGTATGCCATTCCACAATATACACCCTCTCACCATCGGGGA ATGCCCCAAATATGTGAAATCAAACAGATTAGTCCTTGCGACTGGGCTCA GAAATAGCCCTCAAAGAGAGAGAAGAAGAAAAAAGAGAGGATTATTTGGA GCTATAGCAGGTTTTATAGAGGGAGGATGGCAGGGAATGGTAGATGGTTG GTATGGGTACCACCATAGCAATGAGCAGGGGAGTGGGTACGCTGCAGACA AAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCG ATCATTGACAAAATGAACACTCAATTTGAGGCCGTTGGAAGGGAATTTAA CAACTTAGAAAGGAGAATAGAGAATTTAAACAAGAAGATGGAAGACGGGT TCCTAGATGTCTGGACTTATAATGCTGAACTTCTGGTTCTCATGGAAAAT GAGAGAACTCTAGACTTTCATGACTCAAATGTCAAGAACCTTTACGACAA GGTCCGACTACAGCTTAGGGATAATGCAAAGGAGCTGGGTAACGGTTGTT TCGAGTTCTATCATAAATGTGATAATGAATGTATGGAAAGTGTAAGAAAC GGAACGTATGACTACCCGCAGTATTCAGAAGAAGCAAGACTAAAAAGAGA GGAAATAAGTGGAGTAAAATTGGAATCAATAGGAATTTACCAAATACTGT CAATTTATTCTACAGTGGCGAGTTCCCTAGCACTGGCAATCATGGTAGCT GGTCTATCCTTATGGATGTGCTCCAATGGGTCG--------------- >GOOSE_HONGKONG_W355_97 ATGGAGAAAATAGTGCTTCTTCTTGCAACAGTCAGTCTTGTTAAAAGTGA TCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACA CAATAATGGAAAAGAATGTTACTGTTACACATGCCCAAGACATACTGGAA AGGACACACAACGGGAAGCTCTGCGATCTAAATGGAGTGAAACCTCTCAT TTTGAGGGATTGTAGTGTAGCTGGATGGCTCCTCGGAAACCCTATGTGTG ACGAATTCATCAATGTGCCGGAATGGTCTTACATAGTGGAGAAGGCCAGT CCAGCCAATGACCTCTGTTATCCAGGGAATTTCAACGACTATGAAGAACT GAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCC CCAAAAGTTCTTGGTCCAATCATGATGCCTCATCAGGGGTTAGCTCAGCA TGTCCATACCTTGGGAGGTCCTCCTTTTTCAGAAATGTGGTATGGCTTAT CAAAAAGAACAGTGCATACCCAACAATAAAGAGGAGCTACAATAATACCA ACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCG GCAGAGCAGACAAAGCTTTATCAAAATCCAACCACCTACATTTCCGTTGG AACATCAACACTGAACCAGAGATTGGTTCCAGAAATAGCTACTAGACCCA AAGTAAACGGGCAAAGTGGAAGAATGGAGTTCTTCTGGACAATTTTAAAG CCGAATGATGCCATCAATTTCGAGAGTAATGGAAATTTCATTGCCCCAGA ATATGCATACAAAATTGTCAAGAAAGGGGACTCAACAATTATGAAAAGTG AATTGGAATATGGTAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCG ATAAACTCTAGTATGCCATTCCACAACATACACCCCCTCACCATCGGGGA ATGCCCCAAATATGTGAAATCAAACAGATTAGTTCTTGCGACTGGACTCA GAAATACCCCTCAAAGGGAGAGAAGAAGAAAAAAGAGAGGACTATTTGGA GCTATAGCAGGTTTTATAGAGGGAGGATGGCAGGGCATGGTAGATGGTTG GTATGGGTACCACCATAGCAATGAGCAGGGGAGTGGATACGCTGCAGACA AAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCG ATCATTAACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAA TAACTTAGAAAGGAGAATAGAGAATTTAAACAAGAAAATGGAAGACGGAT TCCTAGATGTCTGGACTTACAATGCTGAACTTCTGGTTCTCATGGAAAAT GAGAGAACTCTCGACTTTCATGACTCAAATGTCAAGAACCTTTACGACAA GGTCCGACTACAGCTTAGGGATAATGCAAAGGAACTGGGTAATGGTTGTT TCGAATTCTATCACAAATGTGATAATGAATGTATGGAAAGTGTAAGAAAC GGAACGTATGACTACCCGCAGTATTCAGAAGAAGCAAGACTAAACAGAGA GGAAATAAGTGGAGTAAAATTGGAATCAATGGGAACTTACCAAATACTGT CAATTTATTCAACAGTGGCGAGTTCCCTAGCACTGGCAATCATGGTAGCT GGTCTATCTTTATGGATGTGCTCCAATGGATCGTTACAATGCAGAATT >MALLARD_VIETNAM_16_2003 ATGGAGAAAATAGTGCTTCTTTTTGCAATAGTCAGTCTTGTTAAAAGTGA TCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACA CAATAATGGAAAAGAACGTTACTGTTACACATGCCCAAGACATACTGGAA AAGACACACAACGGGAAGCTCTGCGATCTAGATGGAGTGAAGCCTCTAAT TTTGAGAGATTGTAGTGTAGCTGGATGGCTCCTCGGAAACCCAATGTGTG ACGAATTCATCAATGTGCCGGAATGGTCTTACATAGTGGAGAAGGCCAAT CCAGTCAATGACCTCTGTTACCCAGGGGATTTCAATGAATATGAAGAATT GAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCC CCAAAAGTTCTTGGTCCAGTCATGAAGCCTCATTAGGGGTGAGCTCAGCA TGTCCATACCAGGGAAAGTCCTCCTTTTTCAGAAATGTGGTATGGCTTGT CAAAAAGAACAGTACATACCCAACAATAAAGAGGAGCTACAATAATACCA ACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCG GCAGAGCAGACAAAGCTCTATCAAAATCCAACCACCTACATTTCCGTTGG GACATCAACACTAAACCAGAGATTGGTACCAAGAATAGCTACTAGATCCA AAGTAAACGGGCAAAGTGGAAGGATGGAGTTCTTCTGGACAATTTTAAAA CCGAATGATGCAATCAACTTCGAGAGTAATGGAAATTTCATTGCTCCAGA ATATGCATACAAAATTGTCAAGAAAGGGGACTCAACAATTATGAAAAGTG AATTGGAATATGGTAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCG ATAAACTCTAGTATGCCATTCCACAATATACACCCCCTCACCATCGGGGA ATGCCCCAAATATGTGAAATCAAACAGATTAGTCCTTGCGACTGGGCTCA GAAATAGCCCTCAAAGAGAGAGAAGAAGAAAAAAGAGAGGATTATTTGGA GCTATAGCAGGTTTTATAGAGGGAGGATGGCAAGGAATGGTAGATGGTTG GTATGGGTACCACCATAGCAATGAGCAGGGGAGTGGGTACGCTGCAGACA AAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCG ATCATTGACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAA CAACTTAGAAAGGAGAATAGAGAATTTAAACAAGAAGATGGAAGACGGGT TCCTAGATGTCTGGACTTATAATGCTGAACTTCTGGTTCTCATGGAAAAT GAGAGAACTCTAGACTTTCATGACTCAAATGTCAAGAACCTTTACGACAA GGTCCGACTACAGCTTAGGGATAATGCAAAGGAGCTGGGTAACGGTTGTT TCGAGTTCTATCATAAATGTGATAATGAATGTATGGAAAGTGTAAGAAAC GGAACGTATGACTACCCGCAGTATTCAGAAGAAGCAAGACTAAAAAGAGA GGAAATAAGTGGAGTAAAATTGGAATCAATAGGAATTTACCAAATACTGT CAATTTATTCTACAGTGGCGAGTTCCCTAGCACTGGCAATCATGGTAGCT GGTCTATCCTTATGGATGTGCTCCAATGGGTCGTTACAATGCAGA--- >CHICKEN_CK_160_2005 ATGGAGAAAATAGTGCTTCTTTTTGCAATAGTCAGTCTTGTTAAAAGTGA TCAGATTTGCATTGGTTACCATGCAAACAACTCAACAGAGCAGGTTGACA CAATAATGGAAAAGAACGTTACTGTTACACATGCCCAAGACATACTGGAA AAGACACACAACGGGAAGCTCTGTGATCTAGATGGAGTGAAGCCTCTAAT TTTGAGAGATTGTAGTGTAGCTGGATGGCTCCTTGGAAACCCAATGTGTG ATGAATTCATCAATGTGCCGGAATGGTCTTACATAGTGGAGAAGGCCAAT CCAGCCAATGACCTCTGTTACCCAGGGGATTTCAATGACTATGAAGAATT GAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCC CCAAAAGTTCTTGGTCCAGTCATGAAGCCTCATTAGGAGTGAGCTCAGCA TGTCCATATCAGGGAAAGTCCTCCTTTTTCAGAAATGTGGTATGGCTTAT CAAAAAGAACAGTACATACCCAACAATAAAGAGGAGCTACAATAATACCA ACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCG GCAGAGCAGACAAAGCTCTATCAAAACCCAACCACCTACATTTCCGTTGG GACATCAACACTAAACCAGAGATTGGTACCAAGAATAGCTACTAGATCCA AAGTAAACGGGCAAAGTGGAAGGATGGAGTTCTTCTGGACAATTTTAAAA CCGAATGATGCAATCAACTTCGAGAGTAATGGAAATTTCATTGCTCCAGA ATATGCATACAAAATTGTCAAGAAAGGGGACTCAACAATTATGAAAAGTG AATTGGAATATGGTAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCG ATAAACTCTAGTATGCCATTCCACAATATACACCCTCTCACCATCGGGGA ATGCCCCAAATATGTGAAATCAAACAGATTAGTCCTTGCGACTGGACTCA GAAATAGCCCTCAAAGAGAGAAAAGAAGAAAAAAGAGAGGATTATTTGGA GCTATAGCAGGTTTTATAGAGGGAGGATGGCAGGGAATGGTAGATGGTTG GTATGGGTACCACCATAGCAATGAGCAGGGGAGTGGGTACGCTGCAGACA AAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCG ATCATTGACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAA CAACTTAGAAAGGAGAATAGAGAATTTAAACAAGAAGATGGAAGACGGGT TCCTAGATGTCTGGACTTATAATGCTGAACTTCTGGTTCTCATGGAAAAT GAGAGAACTCTAGACTTTCATGACTCAAATGTCAAGAACCTTTACGACAA GGTCCGACTACAGCTTAGGGATAATGCAAAGGAGCTGGGTAACGGTTGTT TCGAGTTCTATCATAAATGTGATAATGAATGTATGGAAAGTGTAAGGAAC GGAACGTATGACTACCCGCAGTATTCAGAAGAAGCAAGACTAAAAAGAGA GGAAATAAGTGGAGTAAAATTGGAATCAATAGGAATTTACCAAATACTGT CAATTTATTCTACAGTAGCGAGTTCCCTAGCACTGGCAATCATGGTAGCT GGTCTATCCTTATGGATGTGCTTCAATGGGTCGTTACAATGCAGAATT >CK_HK_WF157_2003 ATGGAGAAAATAGTGCTTCTTCTTGCAATAGTCAGTCTTGTTAAAAGTGA TCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACA CAATAATGGAAAAGAACGTTACTGTTACACATGCCCAAGACATACTGGAA AAGACCCACAACGGGAAGCTCTGCGACCTAGATGGAGTGAAGCCTCTAAT TTTGAGAGATTGTAGTGTAGCTGGATGGCTCCTCGGGAACCCAATGTGTG ACGAATTCATCAATGTACCGGAATGGTCTTACATAGTGGAGAAGGCCAGT CCATCCAATGACCTCTGTTACCCAGGGGATTTCAACAATTATGAAGAACT GAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCC CCAAAAGCTCTTGGTCCAATCATGAAGCCTCATCAGGGGTGAGCTCAGCA TGTCCATACCTGGGAAAGCCCTCCTTTTTCAGAAATGTGGTATGGCTTAT CAAAAAGAACAGTACATACCCAACAATAAAGAGGAGCTACAATAATACCA ACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCG GCAGAGCAGATAAAGCTCTATCAAAACCCAACCACCTATATTTCCGTTGG AACATCAACACTAAACCAGAGATTGGTACCAAAAATAGCTACTAGATCCA AAGTAAACGGGCAAAGTGGAAGGATGGAGTTCTTCTGGACAATTTTAAAA CCGAATGATGCAATCAACTTCGAGAGTAATGGAAATTTCATTGCTCCAGA ATATGCATACAAAATTGTCAAGAAAGGGGACTCAGCAATTATGAAAAGTG AATTGGAATATGGTAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCG ATAAACTCTAGTATGCCCTTCCACAACATACACCCTCTCACCATCGGGGA ATGCCCCAAATATGTGAAATCAAACAGACTAGTCCTTGCGACTGGGCTCA GAAATAGCCCTCAAAGAGAGAGAAGAAGAAAAAAGAGAGGACTATTTGGA GCTATAGCGGGTTTTATAGAGGGAGGATGGCAGGGAATGGTAGATGGTTG GTATGGATACCACCATAGCAATGAGCAGGGGAGTGGATACGCTGCAGACA AAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCG ATCATTGACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAA TAACTTAGAAAGGAGAATAGAGAATTTAAACAAGAAGATGGAAGACGGAT TCCTAGATGTCTGGACTTATAATGCTGAACTTCTAGTTCTCATGGAAAAT GAGAGAACTCTAGACTTTCATGACTCAAATGTCAAGAACCTTTACGACAA GGTCCGACTACAGCTTAGGGATAATGCAAAAGAGCTGGGTAACGGTTGTT TCGAGTTCTATCACAAATGTGATAATGAATGTATGGAAAGTGTAAGAAAC GGAACGTATGACTACTCGCAGTATTCAGAAGAAGCAAGACTAAAAAGAGA GGAAATAAGTGGAGTAAAATTGGAATCAATAGGAACTTACCAAATACTGT CAATTTATTCAACAGTGGCGAGTTCCCTAGCACTGGCAATCATGGTAGCT GGTCTATCTTTATGGATGTGCTCCAATGGTTCGTTACAATGT------ >SWINE_ANHUI_1_2004 ATGGAGAAAATAGTGCTTCTTCTTGCAATAGTCAGTCTTGTTAAAGGTGA TCAGATTTGCACTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACA CAATAATGGAAAAGAACGTTACTGTTACACATGCTCAAGACATACTGGAA AAGACACACAACGGGAAGCTCTGCGACCTAGATGGAGTGAAGCCTCTAAT TTTAAGAGATTGTAGTGTAGCTGGATGGCTCCTCGGGAACCCAATGTGTG ACGAATTCATCAATGTGCCGGAATGGTCTTACATAGTGGAGAAGGCCAAT CCAGCCAATGACCTCTGTTACCCAGGGGATTTCAACGACTATGAAGAACT GAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCC CCAAAAGTTCTTGGTCCGATCATGAAGCCTCATCAGGGGTGAGCTCAGCA TGTCCATACCAGGGAAGGTCCTCCTTTTTCAGAAATGTGGTATGGCTTAT CAAAAAGAACAGTGCATACCCAACAATAAAGAGGAGCTACAATAATACCA ACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCACCCTAATGATGCG GCAGAGCAGATAAAGCTCTATCAAAACCCAACCACCTATATTTCCGTTGG GACATCAACACTAAACCAGAGATTGGTACCAAAAATAGCTACTAGATCCA AAGTAAACGGACAAAGTGGAAGAATGGAGTTCTTCTGGACAATTTTAAAA CCGAATGATGCTATCAATTTCGAGAGTAATGGAAATTTCATTGCTCCAGA ATATGCATACAAAATTGTCAAGAAAGGGGACTCTGCAATTATGAAAAGTG AATTGGAATATGGCAACTGCAACACCAAGTGTCAAACTCCAGTGGGGGCG ATAAATTCTAGCATGCCATTCCACAACATACACCCTCTCACCATCGGGGA ATGCCCCAAATATGTGAAATCAAACAGATTAGTCCTTGCGACTGGACTCA GAAATGCCCCTCAAAGAGAGGGAAGAAGAAAAAAGAGAGGACTATTTGGA GCTATAGCAGGGTTTATAGAGGGAGGATGGCAGGGGATGGTAGATGGTTG GTATGGGTACCACCATAGCAATGAGCAGGGGAGTGGATACGCTGCAGACA AAGAATCCACTCAAAAAGCAATAGATGGAGTCACCAATAAGGTCAACTCG ATCATTGACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAA TAACTTAGAAAGGAGAATAGAAAATTTAAACAAGAAGATGGAGGACGGAT TCCTAGATGTCTGGACTTATAATGCTGAACTTCTGGTTCTCATGGAAAAT GAGAGAACTCTAGACTTTCATGACTCAAATGTCAAGAACCTTTACGACAA GGTCCGACTACAGCTTAGGGATAATGCAAAGGAGCTGGGTAACGGTTGTT TCGAGTTCTATCACAGATGTGATAATGAATGTATGGAAAGTGTAAGAAAC GGAACGTATGACTACCCGCAGTATTCGGAAGAAGCAAGACTAAACAGAGA GGAAATAAGTGGAGTAAAATTGGAATCAATAGGAACTTACCAAATACTGT CAATTTATTCAACAGTGGCGAGTTCCCTAGCACTGGCAATCATGGTGGCT GGTCTATCTTTATGGATGTGCTCCAATGGATCGTTACAATGCAGAATT >HONGKONG_1_97_98 ------------------------------------------------GA CCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGATA CAATAATGGAAAAGAATGTTACTGTTACACATGCCCAAGACATACTGGAA AGGACACACGACGGGAAGCTCTGCGATCTAAATGGAGTGAAACCTCTCAT TTTGAGGGATTGTAGTGTAGCTGGATGGCTCCTCGGAAACCCTATGTGTG ACGAATTCATCAATGTGCCGGAATGGTCTTACATAGTGGAGAAGGCCAGT CCAGCCAATGACCTCTGTTATCCAGGGAATTTCAACGACTATGAAGAACT GAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCC CCAAAAGTTCTTGGTCCAATCATGATGCCTCATCAGGGGTGAGCTCAGCA TGTCCATACCTTGGGAGGTCCTCCTTTTTCAGAAATGTGGTATGGCTTAT CAAAAAGAACAGTGCATACCCAACAATAAAGAGGAGCTACAATAATACCA ACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCG GCAGAGCAGACAAAGCTCTATCAAAATCCAACCACCTACATTTCCGTTGG AACATCAACACTGAATCAGAGATTGGTTCCAGAAATAGCTACTAGACCCA AAGTAAACGGGCAAAGTGGAAGAATGGAGTTCTTCTGGACAATTTTAAAG CCGAATGATGCCATCAATTTCGAGAGTAATGGAAATTTCATTGCCCCAGA ATATGCATACAAAATTGTCAAGAAAGGGGACTCAACAATTATGAAAAGTG AATTGGAATATGGTAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCG ATAAACTCTAGTATGCCATTCCACAACATACACCCCCTCACCATCGGGGA ATGCCCCAAATATGTGAAATCAAACAGATTAGTTCTTGCGACTGGACTCA GAAATACCCCTCATAGGGAGAGAAGAAGAAAAAAGAGAGGACTATTTGGA GCTATAGCAGGTTTTATAGAAGGAGGATGGCAGGGAATGGTAGATGGTTG GTATGGGTACCACCATAGCAATGAGCAGGGGAGTGGATACGCTGCAGACC AAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCG ATCATTAACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAA TAACTTAGAAAGGAGAATAGAGAATTTAAACAAGAAAATGGAAGACGGAT TCCTAGATGTCTGGACTTACAATGCTGAACTTCTGGTTCTCATGGAAAAT GAGAGAACTCTCGACTTTCATGACTCAAATGTCAAGAACCTTTACGACAA GGTCCGACTACAGCTTAGGGATAATGCAAAGGAACTGGGTAATGGTTGTT TCGAATTCTATCACAAATGTGATAATGAATGTATGGAAAGTGTAAAAAAC GGAACGTATGACTACCCGCAGTATTCAGAAGAAGCAAGACTAAACAGAGA GGAAATAAGTGGAGTAAAATTGGAATCAATGGGAACTTACCAAATACTGT CAATTTATTCAACAGTGGCGAGTTCCCTAGCACTGGCAATCATGGTAGCT GGTCTATCTTTATGGATGTGCTCCAATGGATCGTTACAATGCAGAATT >GOOSE_SHANTOU_2216_2005 ATGGAGAAAATAGTGCTTCTTCTTGCAATAATCAGCCTTGTTAAAAGTGA TCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACA CAATAATGGAAAAGAACGTTACTGTTACACATGCCCAAGACATACTGGAA AAGACACACAATGGGAAGCTCTGCGACTTAGATGGGGTGAAGCCTCTAAT TTTGAGAGACTGTAGTGTAGCTGGATGGCTCCTCGGGAACCCAATGTGTG ACGAATTCATCAATGTACCGGAATGGTCTTACATAGTGGAGAAGGCCAGT CCAGCCAATGACCTCTGTTACCCAGGTGATTTCAACGATTATGAAGAACT GAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCC CCAAAAGTTCTTGGTCCAATCATGAAGCCTCATCAGGGGTGAGCTCAGCA TGTCCATACCTGGGAAAGCCCTCCTTTTTCAGAAATGTGGTATGGCTTAT CAAAAAGAACAGTGCATACCCAACAATAAAGAGGAGCTACAATAATACCA ACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCG GCAGAGCAGACAAAGCTCTATCAAAACCCAATCACCTATATTTCCGTTGG AACATCAACACTAAACCAGAGATTGGTACCAAAAATAGCTACCAGATCCA AAGTAAACGGGCAAAGTGGAAGGATGGAGTTCTTCTGGACAATTTTAAAA CCGAATGATTCAATCAACTTCGAGAGTAATGGAAATTTCATTGCTCCAGA ATATGCATACAAAATTGTCAAGAAAGGGGACTCAGCAATTATGAAAAGCG AATTGGAATATGGTAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCG ATAAACTCTAGTATGCCATTCCACAACATACACCCTCTCACCATCGGGGA ATGCCCCAAATATGTGAAATCAAACAGATTAGTCCTTGCGACTGGGCTCA GAAATAGCCCTCAAAGAGAGAGAAGAAGAAAGAAGAGAGGACTATTTGGA GCTATAGCAGGTTTTATAGAGGGAGGATGGCAGGGAATGGTAGATGGTTG GTATGGATACCACCATAGCAATGAGCAGGGGAGTGGATACGCTGCAGACA AAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCG ATCATTGACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAA TAACTTAGAAAGGAGAATAGAGAATTTAAACAAGAAGATGGAAGACGGAT TCCTAGATGTCTGGACTTATAATGCTGAACTTCTGGTTCTCATGGAAAAT GAGAGAACTCTAGACTTTCATGACTCAAATGTCAAGAACCTTTACGACAA GGTCCGACTACAGCTTAGGGATAATGCAAAAGAGCTAGGTAACGGTTGTT TCGAGTTCTATCACAAATGTGATAATGAATGCATGGAAAGTGTAAGAAAC GGAACGTATGACTACCCGCAATATTCAGAAGAAGCAAGGCTAAAAAGAGA GGAAATTAGTGGAGTAAAATTGGAATCAATAGGAACTTACCAAATACTGT CAATTTATTCAACAGTGGCAAGTTCCCTAGCGCTGGCAATCATGGTAGCT GGTCTATCTTTATGGATGTGCTCCAATGGTTCGTTACAATGCAGAATT >PEREGRINEFALCON_HK_D0028_2004 ATGGAGAAAATAGTGCTTCTTCTTGCAATAGTCAGTCTTGTTAAAAGTGA TCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACA CAATAATGGAAAAGAATGTTACTGTTACACATGCCCAAGACATACTGGAA AAGACACACAATGGGAAGCTCTGTGACCTAGATGGGGTGAAGCCTCTAAT TTTGAGAGATTGTAGTGTCGCTGGATGGCTCCTCGGGAACCCAATGTGTG ACGAATTCATCAATGTACCGGAATGGTCTTACATAGTGGAGAAGGCCAGT CCAGCCAATGACCTCTGTTACCCAGGTGATTTCAACGATTATGAAGAACT GAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCC CCAAAAGTTCTTGGTCCAATCATGAAGCCTCATCAGGGGTGAGCTCAGCA TGTCCATACCTGGGAAAGCCCTCCTTTTTCAGAAATGTGGTATGGCTTAT CAAAAAGAACAGTGCATACCCAACAATAAAGAGGAGCTACAATAATACCA ACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCG GCAGAGCAGACAAAGCTCTATCAAAACCCAACCACCTATGTTTCCGTTGG AACATCAACACTAAACCAGAGATTGGTACCAAAAATAGCCACCAGATCCA AAGTAAACGGGCAAAGTGGAAGGATGGAGTTCTTCTGGACAATTTTAAAA CCGAATGATGCAATCAACTTCGAGAGTAATGGAAATTTCATTGCTCCAGA ATATGCATACAAAATTGTCAAGAAAGGGGACTCAGCAATTATGAAAAGTG AATTGGAATATGGTAACTGCAATACCAAGTGTCAAACTCCAATGGGGGCG ATAAACTCTAGTATGCCATTCCACAACATACACCCTCTCACCATCGGGGA ATGCCCCAAATATGTGAAATCAAACAGATTAGTCCTTGCGACTGGGCTCA GAAATAGCCCTCAAAGAGAGAGAAGAAGAAAAAAGAGAGGACTATTTGGA GCTATAGCAGGTTTTATAGAGGGAGGATGGCAGGGAATGGTAGATGGTTG GTATGGATACCACCATAGCAATGAGCAGGGGAGTGGATACGCTGCAGACA AAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCG ATCATTGACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAA TAACTTAGAAAGGAGAATAGAGAATTTAAACAAGAAGATGGAAGACGGAT TCCTAGATGTCTGGACTTATAATGCTGAACTTCTGGTTCTCATGGAAAAT GAGAGAACTCTAGACTTTCATGACTCAAATGTCAAGAACCTTTACGACAA GGTCCGACTACAGCTTAGGGATAATGCAAAAGAGCTGGGTAACGGTTGTT TCGAGTTCTATCACAAATGTGATAATGAATGTATGGAAAGTGTAAGAAAC GGAACGTATGACTACCCGCAGTATTCAGAAGAAGCAAGACTAAAAAGAGA GGAAATAAGTGGAGTAAAATTGGAATCAATAGGAACTTACCAAATACTGT CAATTTATTCAACAGTGGCGAGTTCCCTAGCGCTGGCAATCATGGTAGCT GGTCTATCTTTATGGATGTGCTCC------------------------ >HONGKONG_1_538_97 ------------------------------------------------GA TCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACA CAATAATGGAAAAGAATGTTACTGTTACACATGCCCAAGACATACTGGAA AGGACACACAACGGGAAGCTCTGCGATCTAAATGGAGTGAAACCTCTCAT TTTGAGGGATTGTAGTGTAGCTGGATGGCTCCTCGGAAACCCTATGTGTG ACGAATTCATCAATGTGCCGGAATGGTCTTACATAGTGGAGAAGGCCAGT CCAGCCAATGACCTCTGTTATCCAGGGAATTTCAACGACTATGAAGAACT GAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCC CCAAAAGTTCTTGGTCCAATCATGATGCCTCATCAGGGGTGAGCTCAGCA TGTCCATACCTTGGGAGGTCCTCCTTTTTCAGAAATGTGGTATGGCTTAT CAAAAAGAACAGTGCATACCCAACAATAAAGAGGAGCTACAATAATACCA ACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCG GCAGAGCAGACAAAGCTCTATCAAAATCCAACCACCTACATTTCCGTTGG AACATCAACACTGAACCAGAGATTGGTTCCAGAAATAGCTACTAGACCCA AAGTAAACGGGCAAAGTGGAAGAATGGAGTTCTTCTGGACAATTTTAAAG CCGAATGATGCCATCAATTTCGAGAGTAATGGAAATTTCATTGCCCCAGA ATATGCATACAAAATTGTCAAGAAAGGGGACTCAACAATTATGAAAAGTG AATTGGAATATGGTAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCG ATAAACTCTAGTATGCCATTCCACAACATACACCCCCTCACCATCGGGGA ATGCCCCAAATATGTGAAATCAAACAGATTAGTTCTTGCGACTGGACTCA GAAATACCCCTCAAAGGGAGAGAAGAAGAAAAAAGAGAGGACTATTTGGA GCTATAGCAGGTTTTATAGAGGGAGGATGGCAGGGAATGGTAGATGGTTG GTATGGGTACCACCATAGCAATGAGCAGGGGAGTGGATACGCTGCAGACC AAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCG ATCATTAACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAA TAACTTAGAAAGGAGAATAGAGAATTTAAACAAGAAAATGGAAGACGGAT TCCTAGATGTCTGGACTTACAATGCTGAACTTCTGGTTCTCATGGAAAAT GAGAGAACTCTCGACTTTCATGACTCAAATGTCAAGAACCTTTACGACAA GGTCCGACTACAGCTTAGGGATAATGCAAAGGAACTGGGTAATGGTTGTT TCGAATTCTATCACAAATGTGATAATGAATGTATGGAAAGTGTAAGAAAC GGAACGTATGACTACCCGCAGTATTCAGAAGAAGCAAGACTAAACAGAGA GGAAATAAGTGGAGTAAAATTGGAATCAATGGGAACTTACCAAATACTGT CAATTTATTCAACAGTGGCGAGTTCCCTAGCACTGGCAATCATGGTAGCT GGTCTATCTTTATGGATGTGCTCCAATGGATCGTTACAATGCAGAATT \ No newline at end of file +>CHICKEN_HEBEI_326_2005 ATGGAGAGAATAGTGCTTCTTCTTGCAATAATCGGTCTTGTTAAAAGTGA TCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACA CAATAATGGAAAAGAACGTTACTGTTACACATGCTCAAGACATACTGGAG AAGACACACAACGGGAAGCTCTGCAACCCAGATGGAGTGAAGCCTCTAAT TTTGAAAGATTGTAGTGTAGCTGGATGGCTCCTCGGAAACCCAATGTGTG ACGAATTTATCAATGTGCCGGAATGGTCTTACATAGTGGAGAAGGCCAGT CCAGCCAATGGCCTCTGTTACCCAGGGGATTTCAATGACTATGAAGAACT GAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCC CCAAAAGTTCTTGGTCCGATCATGGAGCCTCATCAGGGGTGAGCTCAGCA TGTTCCTATCTGGGGAAGCCCTCCTTTTTCAGAAATGTGGTATGGCTTAT CAAAAAGAATAATACATACCCACCAATAAAGGTGAGCTACAACAATACCA ACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCCAATGATGAG GCAGAGCAGATAAAGATCTATCAAAACCCAACCACCTATATTTCCGTTGG AACATCAACACTAAACCAGAGATTGGTACCAAAAATAGCTACTAGATCCA AAGTAAACGGGCAAAGTGGAAGAATGGAGTTCTTCTGGACAATTTTAAAG CCGAATGATGCTATCAATTTCGATAGTAATGGAAATTTCATTGCTCCAGA ATATGCATACAAAATTGTCAAGAAAGGGGACTCAGCGATTATGAAAAGTG AATTGGAATATGGCAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCG ATAAATTCTAGTATGCCATTCCACAACATACACCCTCTCACCGTCGGGGA ATGCCCCAAATATGTGAAATCAAACAGATTAGTCCTCGCGACTGGACTCA GAAATGCCCCTCAAAGAGAGGGAGGAAGAAAAAAGAGAGGACTATTTGGA GCCATAGCAGGGTTTATAGAGGGAGGATGGCAGGGAATGGTAGATGGTTG GTATGGGTACCACCATAGCAATGAGCAGGGGAGTGGATACGCTGCAGACA AAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCG ATCATTGACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAA TAACTTAGAAAGGAGAATAGAAAATTTAAACAAGAAGATGGAGGACGGAT TCCTAGATGTCTGGACTTATAACGCTGAACTTCTGGTTCTCATGGAAAAT GAGAGAACTCTAGACTTTCATGACTCAAATGTCAAGAACCTTTACGAAAA GGTCCGACTACAGCTTAGGGATAATGCAAAGGAGCTGGGTAACGGTTGTT TCGAGTTCTATCACAAATGTGATAATGAATGTATGGAAAGTGTAAAAAAC GGAACGTATGACTACCCGCAGTATTCAGAAGAAGCAAGACTAAACAGAGA GGAAATAAGTGGAGTAAAATTGGAATCAATGGGAACTTACCAAATACTGT CAATTTATTCAACAGTGGCGAGTTCCCTAGCATTGGCAATCATGGTAGCT GGTCTATCTTTATGGATGTGCTCCAATGGATCGTTACAATGCAGAATT >MALLARD_VIETNAM_16_2003 ATGGAGAAAATAGTGCTTCTTTTTGCAATAGTCAGTCTTGTTAAAAGTGA TCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACA CAATAATGGAAAAGAACGTTACTGTTACACATGCCCAAGACATACTGGAA AAGACACACAACGGGAAGCTCTGCGATCTAGATGGAGTGAAGCCTCTAAT TTTGAGAGATTGTAGTGTAGCTGGATGGCTCCTCGGAAACCCAATGTGTG ACGAATTCATCAATGTGCCGGAATGGTCTTACATAGTGGAGAAGGCCAAT CCAGTCAATGACCTCTGTTACCCAGGGGATTTCAATGAATATGAAGAATT GAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCC CCAAAAGTTCTTGGTCCAGTCATGAAGCCTCATTAGGGGTGAGCTCAGCA TGTCCATACCAGGGAAAGTCCTCCTTTTTCAGAAATGTGGTATGGCTTGT CAAAAAGAACAGTACATACCCAACAATAAAGAGGAGCTACAATAATACCA ACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCG GCAGAGCAGACAAAGCTCTATCAAAATCCAACCACCTACATTTCCGTTGG GACATCAACACTAAACCAGAGATTGGTACCAAGAATAGCTACTAGATCCA AAGTAAACGGGCAAAGTGGAAGGATGGAGTTCTTCTGGACAATTTTAAAA CCGAATGATGCAATCAACTTCGAGAGTAATGGAAATTTCATTGCTCCAGA ATATGCATACAAAATTGTCAAGAAAGGGGACTCAACAATTATGAAAAGTG AATTGGAATATGGTAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCG ATAAACTCTAGTATGCCATTCCACAATATACACCCCCTCACCATCGGGGA ATGCCCCAAATATGTGAAATCAAACAGATTAGTCCTTGCGACTGGGCTCA GAAATAGCCCTCAAAGAGAGAGAAGAAGAAAAAAGAGAGGATTATTTGGA GCTATAGCAGGTTTTATAGAGGGAGGATGGCAAGGAATGGTAGATGGTTG GTATGGGTACCACCATAGCAATGAGCAGGGGAGTGGGTACGCTGCAGACA AAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCG ATCATTGACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAA CAACTTAGAAAGGAGAATAGAGAATTTAAACAAGAAGATGGAAGACGGGT TCCTAGATGTCTGGACTTATAATGCTGAACTTCTGGTTCTCATGGAAAAT GAGAGAACTCTAGACTTTCATGACTCAAATGTCAAGAACCTTTACGACAA GGTCCGACTACAGCTTAGGGATAATGCAAAGGAGCTGGGTAACGGTTGTT TCGAGTTCTATCATAAATGTGATAATGAATGTATGGAAAGTGTAAGAAAC GGAACGTATGACTACCCGCAGTATTCAGAAGAAGCAAGACTAAAAAGAGA GGAAATAAGTGGAGTAAAATTGGAATCAATAGGAATTTACCAAATACTGT CAATTTATTCTACAGTGGCGAGTTCCCTAGCACTGGCAATCATGGTAGCT GGTCTATCCTTATGGATGTGCTCCAATGGGTCGTTACAATGCAGA--- >CHICKEN_CK_160_2005 ATGGAGAAAATAGTGCTTCTTTTTGCAATAGTCAGTCTTGTTAAAAGTGA TCAGATTTGCATTGGTTACCATGCAAACAACTCAACAGAGCAGGTTGACA CAATAATGGAAAAGAACGTTACTGTTACACATGCCCAAGACATACTGGAA AAGACACACAACGGGAAGCTCTGTGATCTAGATGGAGTGAAGCCTCTAAT TTTGAGAGATTGTAGTGTAGCTGGATGGCTCCTTGGAAACCCAATGTGTG ATGAATTCATCAATGTGCCGGAATGGTCTTACATAGTGGAGAAGGCCAAT CCAGCCAATGACCTCTGTTACCCAGGGGATTTCAATGACTATGAAGAATT GAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCC CCAAAAGTTCTTGGTCCAGTCATGAAGCCTCATTAGGAGTGAGCTCAGCA TGTCCATATCAGGGAAAGTCCTCCTTTTTCAGAAATGTGGTATGGCTTAT CAAAAAGAACAGTACATACCCAACAATAAAGAGGAGCTACAATAATACCA ACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCG GCAGAGCAGACAAAGCTCTATCAAAACCCAACCACCTACATTTCCGTTGG GACATCAACACTAAACCAGAGATTGGTACCAAGAATAGCTACTAGATCCA AAGTAAACGGGCAAAGTGGAAGGATGGAGTTCTTCTGGACAATTTTAAAA CCGAATGATGCAATCAACTTCGAGAGTAATGGAAATTTCATTGCTCCAGA ATATGCATACAAAATTGTCAAGAAAGGGGACTCAACAATTATGAAAAGTG AATTGGAATATGGTAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCG ATAAACTCTAGTATGCCATTCCACAATATACACCCTCTCACCATCGGGGA ATGCCCCAAATATGTGAAATCAAACAGATTAGTCCTTGCGACTGGACTCA GAAATAGCCCTCAAAGAGAGAAAAGAAGAAAAAAGAGAGGATTATTTGGA GCTATAGCAGGTTTTATAGAGGGAGGATGGCAGGGAATGGTAGATGGTTG GTATGGGTACCACCATAGCAATGAGCAGGGGAGTGGGTACGCTGCAGACA AAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCG ATCATTGACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAA CAACTTAGAAAGGAGAATAGAGAATTTAAACAAGAAGATGGAAGACGGGT TCCTAGATGTCTGGACTTATAATGCTGAACTTCTGGTTCTCATGGAAAAT GAGAGAACTCTAGACTTTCATGACTCAAATGTCAAGAACCTTTACGACAA GGTCCGACTACAGCTTAGGGATAATGCAAAGGAGCTGGGTAACGGTTGTT TCGAGTTCTATCATAAATGTGATAATGAATGTATGGAAAGTGTAAGGAAC GGAACGTATGACTACCCGCAGTATTCAGAAGAAGCAAGACTAAAAAGAGA GGAAATAAGTGGAGTAAAATTGGAATCAATAGGAATTTACCAAATACTGT CAATTTATTCTACAGTAGCGAGTTCCCTAGCACTGGCAATCATGGTAGCT GGTCTATCCTTATGGATGTGCTTCAATGGGTCGTTACAATGCAGAATT >CK_HK_WF157_2003 ATGGAGAAAATAGTGCTTCTTCTTGCAATAGTCAGTCTTGTTAAAAGTGA TCAGATTTGCATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACA CAATAATGGAAAAGAACGTTACTGTTACACATGCCCAAGACATACTGGAA AAGACCCACAACGGGAAGCTCTGCGACCTAGATGGAGTGAAGCCTCTAAT TTTGAGAGATTGTAGTGTAGCTGGATGGCTCCTCGGGAACCCAATGTGTG ACGAATTCATCAATGTACCGGAATGGTCTTACATAGTGGAGAAGGCCAGT CCATCCAATGACCTCTGTTACCCAGGGGATTTCAACAATTATGAAGAACT GAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCC CCAAAAGCTCTTGGTCCAATCATGAAGCCTCATCAGGGGTGAGCTCAGCA TGTCCATACCTGGGAAAGCCCTCCTTTTTCAGAAATGTGGTATGGCTTAT CAAAAAGAACAGTACATACCCAACAATAAAGAGGAGCTACAATAATACCA ACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCG GCAGAGCAGATAAAGCTCTATCAAAACCCAACCACCTATATTTCCGTTGG AACATCAACACTAAACCAGAGATTGGTACCAAAAATAGCTACTAGATCCA AAGTAAACGGGCAAAGTGGAAGGATGGAGTTCTTCTGGACAATTTTAAAA CCGAATGATGCAATCAACTTCGAGAGTAATGGAAATTTCATTGCTCCAGA ATATGCATACAAAATTGTCAAGAAAGGGGACTCAGCAATTATGAAAAGTG AATTGGAATATGGTAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCG ATAAACTCTAGTATGCCCTTCCACAACATACACCCTCTCACCATCGGGGA ATGCCCCAAATATGTGAAATCAAACAGACTAGTCCTTGCGACTGGGCTCA GAAATAGCCCTCAAAGAGAGAGAAGAAGAAAAAAGAGAGGACTATTTGGA GCTATAGCGGGTTTTATAGAGGGAGGATGGCAGGGAATGGTAGATGGTTG GTATGGATACCACCATAGCAATGAGCAGGGGAGTGGATACGCTGCAGACA AAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCG ATCATTGACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAA TAACTTAGAAAGGAGAATAGAGAATTTAAACAAGAAGATGGAAGACGGAT TCCTAGATGTCTGGACTTATAATGCTGAACTTCTAGTTCTCATGGAAAAT GAGAGAACTCTAGACTTTCATGACTCAAATGTCAAGAACCTTTACGACAA GGTCCGACTACAGCTTAGGGATAATGCAAAAGAGCTGGGTAACGGTTGTT TCGAGTTCTATCACAAATGTGATAATGAATGTATGGAAAGTGTAAGAAAC GGAACGTATGACTACTCGCAGTATTCAGAAGAAGCAAGACTAAAAAGAGA GGAAATAAGTGGAGTAAAATTGGAATCAATAGGAACTTACCAAATACTGT CAATTTATTCAACAGTGGCGAGTTCCCTAGCACTGGCAATCATGGTAGCT GGTCTATCTTTATGGATGTGCTCCAATGGTTCGTTACAATGT------ >SWINE_ANHUI_1_2004 ATGGAGAAAATAGTGCTTCTTCTTGCAATAGTCAGTCTTGTTAAAGGTGA TCAGATTTGCACTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACA CAATAATGGAAAAGAACGTTACTGTTACACATGCTCAAGACATACTGGAA AAGACACACAACGGGAAGCTCTGCGACCTAGATGGAGTGAAGCCTCTAAT TTTAAGAGATTGTAGTGTAGCTGGATGGCTCCTCGGGAACCCAATGTGTG ACGAATTCATCAATGTGCCGGAATGGTCTTACATAGTGGAGAAGGCCAAT CCAGCCAATGACCTCTGTTACCCAGGGGATTTCAACGACTATGAAGAACT GAAACACCTATTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCC CCAAAAGTTCTTGGTCCGATCATGAAGCCTCATCAGGGGTGAGCTCAGCA TGTCCATACCAGGGAAGGTCCTCCTTTTTCAGAAATGTGGTATGGCTTAT CAAAAAGAACAGTGCATACCCAACAATAAAGAGGAGCTACAATAATACCA ACCAAGAAGATCTTTTGGTACTGTGGGGGATTCACCACCCTAATGATGCG GCAGAGCAGATAAAGCTCTATCAAAACCCAACCACCTATATTTCCGTTGG GACATCAACACTAAACCAGAGATTGGTACCAAAAATAGCTACTAGATCCA AAGTAAACGGACAAAGTGGAAGAATGGAGTTCTTCTGGACAATTTTAAAA CCGAATGATGCTATCAATTTCGAGAGTAATGGAAATTTCATTGCTCCAGA ATATGCATACAAAATTGTCAAGAAAGGGGACTCTGCAATTATGAAAAGTG AATTGGAATATGGCAACTGCAACACCAAGTGTCAAACTCCAGTGGGGGCG ATAAATTCTAGCATGCCATTCCACAACATACACCCTCTCACCATCGGGGA ATGCCCCAAATATGTGAAATCAAACAGATTAGTCCTTGCGACTGGACTCA GAAATGCCCCTCAAAGAGAGGGAAGAAGAAAAAAGAGAGGACTATTTGGA GCTATAGCAGGGTTTATAGAGGGAGGATGGCAGGGGATGGTAGATGGTTG GTATGGGTACCACCATAGCAATGAGCAGGGGAGTGGATACGCTGCAGACA AAGAATCCACTCAAAAAGCAATAGATGGAGTCACCAATAAGGTCAACTCG ATCATTGACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAA TAACTTAGAAAGGAGAATAGAAAATTTAAACAAGAAGATGGAGGACGGAT TCCTAGATGTCTGGACTTATAATGCTGAACTTCTGGTTCTCATGGAAAAT GAGAGAACTCTAGACTTTCATGACTCAAATGTCAAGAACCTTTACGACAA GGTCCGACTACAGCTTAGGGATAATGCAAAGGAGCTGGGTAACGGTTGTT TCGAGTTCTATCACAGATGTGATAATGAATGTATGGAAAGTGTAAGAAAC GGAACGTATGACTACCCGCAGTATTCGGAAGAAGCAAGACTAAACAGAGA GGAAATAAGTGGAGTAAAATTGGAATCAATAGGAACTTACCAAATACTGT CAATTTATTCAACAGTGGCGAGTTCCCTAGCACTGGCAATCATGGTGGCT GGTCTATCTTTATGGATGTGCTCCAATGGATCGTTACAATGCAGAATT \ No newline at end of file
--- a/test-data/meme-in1.nhx Mon Feb 17 14:53:45 2020 -0500 +++ b/test-data/meme-in1.nhx Thu Feb 20 18:11:41 2020 -0500 @@ -1,1 +1,1 @@ -((((((CHICKEN_HEBEI_326_2005:0.02100885319673648,(SWINE_ANHUI_1_2004:0.007702393698306516):0.002095219592954275):0.003887237703073042):0.003404921392531202,(((CHICKEN_HONGKONG_915_97,(GOOSE_HONGKONG_W355_97):0.002899766890966483):0.001306376767766534,HONGKONG_1_97_98:0.003844928589233716):0.000182535836694054,HONGKONG_1_538_97):0.02096173714686362):0.003130608143291779,(((GOOSE_SHANTOU_2216_2005:0.006207842095177651):0.002530613798219486,PEREGRINEFALCON_HK_D0028_2004:0.003608296348267232):0.003288900909856382,CK_HK_WF157_2003:0.00663129750258774):0.004655295319725731):0.0116808817874948,(((HUMAN_VIETNAM_CL105_2005:0.006521522005742001):0.001967887030302483,HUMAN_VIETNAM_3062_2004:0.001641397323851184):0.0003125512332168847,MALLARD_VIETNAM_16_2003:0.003244216605281072):0.0004125980823087554):0.0003400912533471183,CHICKEN_CK_160_2005:0.006168335080088849) +((((((CHICKEN_HEBEI_326_2005:0.02100885319673648,(SWINE_ANHUI_1_2004:0.007702393698306516):0.002095219592954275):0.003887237703073042)):0.003130608143291779,(CK_HK_WF157_2003:0.00663129750258774):0.004655295319725731):0.0116808817874948,(MALLARD_VIETNAM_16_2003:0.003244216605281072):0.0004125980823087554):0.0003400912533471183,CHICKEN_CK_160_2005:0.006168335080088849)
--- a/test-data/meme-out1.json Mon Feb 17 14:53:45 2020 -0500 +++ b/test-data/meme-out1.json Thu Feb 20 18:11:41 2020 -0500 @@ -4,568 +4,568 @@ "0": [ [0, 0, 1, 0, 0, 0, 1, 0, 0], [0, 0, 1, 0, 0, 0, 1, 0, 0], - [0, 0, 0, 1.817789942174416, 1, 0, 0.6666666666666666, 0, 0.1215618554703716], - [0, 0, 1, 0, 0, 0, 1, 0, 0], - [0, 0, 1, 0, 0, 0, 1, 0, 0], - [0, 0, 1, 0, 0, 0, 1, 0, 0], - [0, 0, 1, 0, 0, 0, 1, 0, 0], - [0, 0, 0, 1.900735833403759, 1, 0, 0.6666666666666666, 0, 0.1271087320415013], - [4.223295318660594, 0, 0.1812832787403597, 0, 0.8187167212596403, 0, 0.6666666666666666, 0, 0.1220041843130002], - [0, 0, 0, 1.454313013998262, 1, 0, 0.6666666666666666, 0, 0.0972549051541481], - [0, 0, 0, 3.87077558632765, 1, 0, 0.6666666666666666, 0, 0.2588520551613089], - [5.621376790757513, 1.370160457631764, 0.9999999999999731, 0.7647952134694137, 2.686739719592879e-14, 0, 0.6666666666666666, 0, 0.254019836850675], - [0, 0, 1, 0, 0, 0, 1, 0, 0], - [0, 0, 1, 0, 0, 0, 1, 0, 0], - [0, 0, 1, 0, 0, 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(partition 1)":1, + "CHICKEN_HEBEI_326_2005":{ "EBF site 100 (partition 1)":1, - "EBF site 102 (partition 1)":1379.756035017705, + "EBF site 102 (partition 1)":0.06569877494136181, "EBF site 104 (partition 1)":1, - "EBF site 107 (partition 1)":1, - "EBF site 109 (partition 1)":1, "EBF site 11 (partition 1)":1, - "EBF site 110 (partition 1)":1, "EBF site 112 (partition 1)":1, "EBF site 113 (partition 1)":1, "EBF site 117 (partition 1)":1, @@ -1124,27 +717,22 @@ "EBF site 136 (partition 1)":1, "EBF site 140 (partition 1)":1, "EBF site 142 (partition 1)":1, - "EBF site 145 (partition 1)":0.9437923890358962, + "EBF site 145 (partition 1)":1, "EBF site 146 (partition 1)":1, - "EBF site 147 (partition 1)":1, - "EBF site 150 (partition 1)":0.8851921878588614, "EBF site 152 (partition 1)":1, "EBF site 153 (partition 1)":1, - "EBF site 154 (partition 1)":0.6798007785957374, + "EBF site 154 (partition 1)":1, "EBF site 155 (partition 1)":1, "EBF site 156 (partition 1)":1, "EBF site 157 (partition 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site 327 (partition 1)":1, - "EBF site 328 (partition 1)":1, "EBF site 329 (partition 1)":1, - "EBF site 33 (partition 1)":1, "EBF site 332 (partition 1)":1, - "EBF site 336 (partition 1)":0.04728563578028874, - "EBF site 338 (partition 1)":0.6046360278098571, - "EBF site 339 (partition 1)":1, - "EBF site 341 (partition 1)":1, + "EBF site 336 (partition 1)":0.02455830900453714, + "EBF site 341 (partition 1)":0.3158303901000457, "EBF site 342 (partition 1)":1, - "EBF site 344 (partition 1)":1, "EBF site 348 (partition 1)":1, "EBF site 351 (partition 1)":1, "EBF site 353 (partition 1)":1, "EBF site 354 (partition 1)":1, - "EBF site 357 (partition 1)":1, "EBF site 361 (partition 1)":1, "EBF site 362 (partition 1)":1, "EBF site 369 (partition 1)":1, "EBF site 379 (partition 1)":1, - "EBF site 384 (partition 1)":1, "EBF site 389 (partition 1)":1, - "EBF site 39 (partition 1)":1, - "EBF site 403 (partition 1)":1, - "EBF site 408 (partition 1)":1, "EBF site 417 (partition 1)":1, "EBF site 424 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(partition 1)":1, "EBF site 8 (partition 1)":1, - "EBF site 81 (partition 1)":1, "EBF site 84 (partition 1)":1, "EBF site 86 (partition 1)":1, "EBF site 89 (partition 1)":1, - "EBF site 9 (partition 1)":1, - "EBF site 99 (partition 1)":0.8814241490294908, - "Global MG94xREV":0.007138402704329205, - "Nucleotide GTR":0.007037915764630463, - "original name":"CK_HK_WF157_2003" + "Global MG94xREV":0.02423152216561739, + "Nucleotide GTR":0.02374038722405768, + "original name":"CHICKEN_HEBEI_326_2005" }, - "GOOSE_HONGKONG_W355_97":{ - "EBF site 10 (partition 1)":1, + "CK_HK_WF157_2003":{ "EBF site 100 (partition 1)":1, - "EBF site 102 (partition 1)":0.8777289496419938, + "EBF site 102 (partition 1)":3.856684674269879, "EBF site 104 (partition 1)":1, - "EBF site 107 (partition 1)":1, - "EBF site 109 (partition 1)":1, "EBF site 11 (partition 1)":1, - "EBF site 110 (partition 1)":1, "EBF site 112 (partition 1)":1, "EBF site 113 (partition 1)":1, "EBF site 117 (partition 1)":1, @@ -1296,27 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(partition 1)":1, "EBF site 302 (partition 1)":1, "EBF site 304 (partition 1)":1, @@ -3419,106 +1325,66 @@ "EBF site 312 (partition 1)":1, "EBF site 315 (partition 1)":1, "EBF site 327 (partition 1)":1, - "EBF site 328 (partition 1)":1, "EBF site 329 (partition 1)":1, - "EBF site 33 (partition 1)":1, "EBF site 332 (partition 1)":1, - "EBF site 336 (partition 1)":1, - "EBF site 338 (partition 1)":1, - "EBF site 339 (partition 1)":1, - "EBF site 341 (partition 1)":1, + "EBF site 336 (partition 1)":5.529638339483919, + "EBF site 341 (partition 1)":1.478556710666465, "EBF site 342 (partition 1)":1, - "EBF site 344 (partition 1)":1, "EBF site 348 (partition 1)":1, "EBF site 351 (partition 1)":1, "EBF site 353 (partition 1)":1, "EBF site 354 (partition 1)":1, - "EBF site 357 (partition 1)":1, "EBF site 361 (partition 1)":1, "EBF site 362 (partition 1)":1, "EBF site 369 (partition 1)":1, "EBF site 379 (partition 1)":1, - "EBF site 384 (partition 1)":1, "EBF site 389 (partition 1)":1, - "EBF 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(partition 1)":1, "EBF site 142 (partition 1)":1, - "EBF site 145 (partition 1)":159.4832746952417, + "EBF site 145 (partition 1)":1, "EBF site 146 (partition 1)":1, - "EBF site 147 (partition 1)":1, - "EBF site 150 (partition 1)":0.8001668156939907, "EBF site 152 (partition 1)":1, "EBF site 153 (partition 1)":1, - "EBF site 154 (partition 1)":39.92575073528594, + "EBF site 154 (partition 1)":1, "EBF site 155 (partition 1)":1, "EBF site 156 (partition 1)":1, "EBF site 157 (partition 1)":1, - "EBF site 16 (partition 1)":1, - "EBF site 167 (partition 1)":0.2385451274628346, - "EBF site 17 (partition 1)":1, + "EBF site 16 (partition 1)":0.9932935525732471, + "EBF site 167 (partition 1)":0.4553024703787611, "EBF site 170 (partition 1)":1, "EBF site 171 (partition 1)":1, "EBF site 172 (partition 1)":1, "EBF site 175 (partition 1)":1, - "EBF site 178 (partition 1)":0.2088079752385484, + "EBF site 178 (partition 1)":0.7349411890690492, "EBF site 181 (partition 1)":1, - "EBF site 191 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"EBF site 73 (partition 1)":1, - "EBF site 77 (partition 1)":1, "EBF site 78 (partition 1)":1, "EBF site 79 (partition 1)":1, "EBF site 8 (partition 1)":1, - "EBF site 81 (partition 1)":1, "EBF site 84 (partition 1)":1, "EBF site 86 (partition 1)":1, "EBF site 89 (partition 1)":1, - "EBF site 9 (partition 1)":1, - "EBF site 99 (partition 1)":0.6821851695454719, - "Global MG94xREV":0.02246388212380395, - "Nucleotide GTR":0.02179689595862389 + "Global MG94xREV":0.004576755835518515, + "Nucleotide GTR":0.004637868093937116 }, - "PEREGRINEFALCON_HK_D0028_2004":{ - "EBF site 10 (partition 1)":1, + "SWINE_ANHUI_1_2004":{ "EBF site 100 (partition 1)":1, - "EBF site 102 (partition 1)":0.1032034263258886, + "EBF site 102 (partition 1)":0.1686787772874804, "EBF site 104 (partition 1)":1, - "EBF site 107 (partition 1)":1, - "EBF site 109 (partition 1)":1, "EBF site 11 (partition 1)":1, - "EBF site 110 (partition 1)":1, "EBF site 112 (partition 1)":1, "EBF site 113 (partition 1)":1, "EBF site 117 (partition 1)":1, @@ -5065,27 +1840,22 @@ "EBF site 136 (partition 1)":1, "EBF site 140 (partition 1)":1, "EBF site 142 (partition 1)":1, - "EBF site 145 (partition 1)":0.9706303930779846, + "EBF site 145 (partition 1)":1, "EBF site 146 (partition 1)":1, - "EBF site 147 (partition 1)":1, - "EBF site 150 (partition 1)":0.9389846074715197, "EBF site 152 (partition 1)":1, "EBF site 153 (partition 1)":1, - "EBF site 154 (partition 1)":0.8125542656684678, + "EBF site 154 (partition 1)":1, "EBF site 155 (partition 1)":1, "EBF site 156 (partition 1)":1, "EBF site 157 (partition 1)":1, - "EBF site 16 (partition 1)":1, - "EBF site 167 (partition 1)":0.5671096289256772, - "EBF site 17 (partition 1)":1, + "EBF site 16 (partition 1)":2.825233043426132, + "EBF site 167 (partition 1)":0.1907402925694587, "EBF site 170 (partition 1)":1, "EBF site 171 (partition 1)":1, "EBF site 172 (partition 1)":1, "EBF site 175 (partition 1)":1, - "EBF site 178 (partition 1)":0.5702976100075504, + "EBF site 178 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"EBF site 558 (partition 1)":0.9365183434132754, + "EBF site 558 (partition 1)":0.6961922557341373, "EBF site 560 (partition 1)":1, "EBF site 564 (partition 1)":1, "EBF site 58 (partition 1)":1, "EBF site 59 (partition 1)":1, "EBF site 60 (partition 1)":1, - "EBF site 61 (partition 1)":1, - "EBF site 62 (partition 1)":1, - "EBF site 64 (partition 1)":1, - "EBF site 66 (partition 1)":1, "EBF site 68 (partition 1)":1, "EBF site 69 (partition 1)":1, - "EBF site 70 (partition 1)":1, - "EBF site 73 (partition 1)":1, - "EBF site 77 (partition 1)":1, "EBF site 78 (partition 1)":1, "EBF site 79 (partition 1)":1, "EBF site 8 (partition 1)":1, - "EBF site 81 (partition 1)":1, "EBF site 84 (partition 1)":1, "EBF site 86 (partition 1)":1, "EBF site 89 (partition 1)":1, - "EBF site 9 (partition 1)":1, - "EBF site 99 (partition 1)":0.9369013856364607, - "Global MG94xREV":0.003655946853100859, - "Nucleotide GTR":0.003602525374571392, - "original name":"PEREGRINEFALCON_HK_D0028_2004" - }, - 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GTR":0.007656566904909031, + "Global MG94xREV":0.007944352318354534, + "Nucleotide GTR":0.00775874788653539, "original name":"SWINE_ANHUI_1_2004" } }, "attributes":{ - "EBF site 10 (partition 1)":{ - "attribute type":"branch label", - "display order":12 - }, "EBF site 100 (partition 1)":{ "attribute type":"branch label", "display order":102 @@ -5411,22 +1955,10 @@ "attribute type":"branch label", "display order":106 }, - "EBF site 107 (partition 1)":{ - "attribute type":"branch label", - "display order":109 - }, - "EBF site 109 (partition 1)":{ - "attribute type":"branch label", - "display order":111 - }, "EBF site 11 (partition 1)":{ "attribute type":"branch label", "display order":13 }, - "EBF site 110 (partition 1)":{ - "attribute type":"branch label", - "display order":112 - }, "EBF site 112 (partition 1)":{ "attribute type":"branch label", "display order":114 @@ -5463,14 +1995,6 @@ "attribute type":"branch label", "display order":148 }, - "EBF site 147 (partition 1)":{ - "attribute type":"branch label", - "display order":149 - }, - "EBF site 150 (partition 1)":{ - "attribute type":"branch label", - "display order":152 - }, "EBF site 152 (partition 1)":{ "attribute type":"branch label", "display order":154 @@ -5503,10 +2027,6 @@ "attribute type":"branch label", "display order":169 }, - "EBF site 17 (partition 1)":{ - "attribute type":"branch label", - "display order":19 - }, "EBF site 170 (partition 1)":{ "attribute type":"branch label", "display order":172 @@ -5531,14 +2051,6 @@ "attribute type":"branch label", "display order":183 }, - "EBF site 191 (partition 1)":{ - "attribute type":"branch label", - "display order":193 - }, - "EBF site 195 (partition 1)":{ - "attribute type":"branch label", - "display order":197 - }, "EBF site 196 (partition 1)":{ "attribute type":"branch label", "display order":198 @@ -5567,62 +2079,22 @@ "attribute type":"branch label", "display order":23 }, - "EBF site 211 (partition 1)":{ - "attribute type":"branch label", - "display order":213 - }, "EBF site 213 (partition 1)":{ "attribute type":"branch label", "display order":215 }, - "EBF site 214 (partition 1)":{ - "attribute type":"branch label", - "display order":216 - }, "EBF site 217 (partition 1)":{ "attribute type":"branch label", "display order":219 }, - "EBF site 221 (partition 1)":{ - "attribute type":"branch label", - "display order":223 - }, - "EBF site 222 (partition 1)":{ - "attribute type":"branch label", - "display order":224 - }, - "EBF site 224 (partition 1)":{ - "attribute type":"branch label", - "display order":226 - }, - "EBF site 226 (partition 1)":{ - "attribute type":"branch label", - "display order":228 - }, "EBF site 228 (partition 1)":{ "attribute type":"branch label", "display order":230 }, - "EBF site 230 (partition 1)":{ - "attribute type":"branch label", - "display order":232 - }, - "EBF site 231 (partition 1)":{ - "attribute type":"branch label", - "display order":233 - }, - "EBF site 233 (partition 1)":{ - "attribute type":"branch label", - "display order":235 - }, "EBF site 237 (partition 1)":{ "attribute type":"branch label", "display order":239 }, - "EBF site 240 (partition 1)":{ - "attribute type":"branch label", - "display order":242 - }, "EBF site 241 (partition 1)":{ "attribute type":"branch label", "display order":243 @@ -5643,14 +2115,6 @@ "attribute type":"branch label", "display order":260 }, - "EBF site 265 (partition 1)":{ - "attribute type":"branch label", - "display order":267 - }, - "EBF site 271 (partition 1)":{ - "attribute type":"branch label", - "display order":273 - }, "EBF site 278 (partition 1)":{ "attribute type":"branch label", "display order":280 @@ -5663,18 +2127,10 @@ "attribute type":"branch label", "display order":30 }, - "EBF site 283 (partition 1)":{ - "attribute type":"branch label", - "display order":285 - }, "EBF site 288 (partition 1)":{ "attribute type":"branch label", "display order":290 }, - "EBF site 291 (partition 1)":{ - "attribute type":"branch label", - "display order":293 - }, "EBF site 298 (partition 1)":{ "attribute type":"branch label", "display order":300 @@ -5711,18 +2167,10 @@ "attribute type":"branch label", "display order":329 }, - "EBF site 328 (partition 1)":{ - "attribute type":"branch label", - "display order":330 - }, "EBF site 329 (partition 1)":{ "attribute type":"branch label", "display order":331 }, - "EBF site 33 (partition 1)":{ - "attribute type":"branch label", - "display order":35 - }, "EBF site 332 (partition 1)":{ "attribute type":"branch label", "display order":334 @@ -5731,14 +2179,6 @@ "attribute type":"branch label", "display order":338 }, - "EBF site 338 (partition 1)":{ - "attribute type":"branch label", - "display order":340 - }, - "EBF site 339 (partition 1)":{ - "attribute type":"branch label", - "display order":341 - }, "EBF site 341 (partition 1)":{ "attribute type":"branch label", "display order":343 @@ -5747,10 +2187,6 @@ "attribute type":"branch label", "display order":344 }, - "EBF site 344 (partition 1)":{ - "attribute type":"branch label", - "display order":346 - }, "EBF site 348 (partition 1)":{ "attribute type":"branch label", "display order":350 @@ -5767,10 +2203,6 @@ "attribute type":"branch label", "display order":356 }, - "EBF site 357 (partition 1)":{ - "attribute type":"branch label", - "display order":359 - }, "EBF site 361 (partition 1)":{ "attribute type":"branch label", "display order":363 @@ -5787,26 +2219,10 @@ "attribute type":"branch label", "display order":381 }, - "EBF site 384 (partition 1)":{ - "attribute type":"branch label", - "display order":386 - }, "EBF site 389 (partition 1)":{ "attribute type":"branch label", "display order":391 }, - "EBF site 39 (partition 1)":{ - "attribute type":"branch label", - "display order":41 - }, - "EBF site 403 (partition 1)":{ - "attribute type":"branch label", - "display order":405 - }, - "EBF site 408 (partition 1)":{ - "attribute type":"branch label", - "display order":410 - }, "EBF site 417 (partition 1)":{ "attribute type":"branch label", "display order":419 @@ -5815,10 +2231,6 @@ "attribute type":"branch label", "display order":426 }, - "EBF site 429 (partition 1)":{ - "attribute type":"branch label", - "display order":431 - }, "EBF site 431 (partition 1)":{ "attribute type":"branch label", "display order":433 @@ -5827,10 +2239,6 @@ "attribute type":"branch label", "display order":435 }, - "EBF site 440 (partition 1)":{ - "attribute type":"branch label", - "display order":442 - }, "EBF site 441 (partition 1)":{ "attribute type":"branch label", "display order":443 @@ -5843,10 +2251,6 @@ "attribute type":"branch label", "display order":47 }, - "EBF site 454 (partition 1)":{ - "attribute type":"branch label", - "display order":456 - }, "EBF site 466 (partition 1)":{ "attribute type":"branch label", "display order":468 @@ -5855,22 +2259,6 @@ "attribute type":"branch label", "display order":479 }, - "EBF site 478 (partition 1)":{ - "attribute type":"branch label", - "display order":480 - }, - "EBF site 479 (partition 1)":{ - "attribute type":"branch label", - "display order":481 - }, - "EBF site 481 (partition 1)":{ - "attribute type":"branch label", - "display order":483 - }, - "EBF site 485 (partition 1)":{ - "attribute type":"branch label", - "display order":487 - }, "EBF site 488 (partition 1)":{ "attribute type":"branch label", "display order":490 @@ -5879,10 +2267,6 @@ "attribute type":"branch label", "display order":491 }, - "EBF site 494 (partition 1)":{ - "attribute type":"branch label", - "display order":496 - }, "EBF site 499 (partition 1)":{ "attribute type":"branch label", "display order":501 @@ -5895,34 +2279,14 @@ "attribute type":"branch label", "display order":508 }, - "EBF site 507 (partition 1)":{ - "attribute type":"branch label", - "display order":509 - }, "EBF site 509 (partition 1)":{ "attribute type":"branch label", "display order":511 }, - "EBF site 51 (partition 1)":{ - "attribute type":"branch label", - "display order":53 - }, - "EBF site 513 (partition 1)":{ - "attribute type":"branch label", - "display order":515 - }, - "EBF site 514 (partition 1)":{ - "attribute type":"branch label", - "display order":516 - }, "EBF site 515 (partition 1)":{ "attribute type":"branch label", "display order":517 }, - "EBF site 519 (partition 1)":{ - "attribute type":"branch label", - "display order":521 - }, "EBF site 52 (partition 1)":{ "attribute type":"branch label", "display order":54 @@ -5943,18 +2307,6 @@ "attribute type":"branch label", "display order":541 }, - "EBF site 54 (partition 1)":{ - "attribute type":"branch label", - "display order":56 - }, - "EBF site 540 (partition 1)":{ - "attribute type":"branch label", - "display order":542 - }, - "EBF site 544 (partition 1)":{ - "attribute type":"branch label", - "display order":546 - }, "EBF site 545 (partition 1)":{ "attribute type":"branch label", "display order":547 @@ -5991,22 +2343,6 @@ "attribute type":"branch label", "display order":62 }, - "EBF site 61 (partition 1)":{ - "attribute type":"branch label", - "display order":63 - }, - "EBF site 62 (partition 1)":{ - "attribute type":"branch label", - "display order":64 - }, - "EBF site 64 (partition 1)":{ - "attribute type":"branch label", - "display order":66 - }, - "EBF site 66 (partition 1)":{ - "attribute type":"branch label", - "display order":68 - }, "EBF site 68 (partition 1)":{ "attribute type":"branch label", "display order":70 @@ -6015,18 +2351,6 @@ "attribute type":"branch label", "display order":71 }, - "EBF site 70 (partition 1)":{ - "attribute type":"branch label", - "display order":72 - }, - "EBF site 73 (partition 1)":{ - "attribute type":"branch label", - "display order":75 - }, - "EBF site 77 (partition 1)":{ - "attribute type":"branch label", - "display order":79 - }, "EBF site 78 (partition 1)":{ "attribute type":"branch label", "display order":80 @@ -6039,10 +2363,6 @@ "attribute type":"branch label", "display order":10 }, - "EBF site 81 (partition 1)":{ - "attribute type":"branch label", - "display order":83 - }, "EBF site 84 (partition 1)":{ "attribute type":"branch label", "display order":86 @@ -6055,14 +2375,6 @@ "attribute type":"branch label", "display order":91 }, - "EBF site 9 (partition 1)":{ - "attribute type":"branch label", - "display order":11 - }, - "EBF site 99 (partition 1)":{ - "attribute type":"branch label", - "display order":101 - }, "Global MG94xREV":{ "attribute type":"branch length", "display order":1 @@ -6087,153 +2399,137 @@ }, "fits":{ "Global MG94xREV":{ - "AIC-c":7226.087178885974, + "AIC-c":6011.13695012892, "Equilibrium frequencies": [ -[0.0485984009412611], - [0.02956900357719973], - [0.03108082672838122], - [0.03449710399341214], - [0.02053762541952889], - [0.01249582512460089], - [0.01313471975854296], - [0.01457843439605254], - [0.02308459048229354], - [0.01404548967308914], - [0.01476361655896873], - [0.01638637286596178], - [0.03046946697462319], - [0.01853871239625653], - [0.01948657168142254], - [0.0216284558851606], - [0.02112660536120122], - [0.01285418156565452], - [0.01351139847963371], - [0.01499651610047861], - [0.008928077856285582], - [0.005432161572334556], - [0.005709900644757894], - [0.006337509553901212], - [0.01003528971321133], - [0.006105828827307119], - [0.006418011595122538], - [0.007123453161742795], - [0.01324562931848419], - [0.008059114150152886], - [0.008471165754069981], - [0.009402281622603544], - [0.03932718962871962], - [0.02392806734975356], - [0.02515147706283166], - [0.0279160244805243], - [0.01661962273972026], - [0.01011197230206122], - [0.01062898376612524], - [0.01179727815893297], - [0.01868069833194261], - [0.0113660043356041], - [0.01194713276105585], - [0.01326031269640911], - [0.02465674759639369], - [0.01500204623524711], - [0.01576908056409512], - [0.01750235335932507], - [0.02110645419006403], - [0.02462414883970813], - [0.01465982608978509], - [0.008919561995751803], - [0.009375607133978042], - [0.01040613549725428], - [0.01002571776178019], - [0.01053831914788704], - [0.0116966480569341], - [0.02174920799128454], - [0.01323299525169244], - [0.01390958039696969], - [0.01543846454447198] +[0.0487448731499957], + [0.02916309663834602], + [0.03100171502919514], + [0.03392179881163448], + [0.02040080210426937], + [0.01220539771302355], + [0.01297489997065711], + [0.01419701929364967], + [0.02306796533539959], + [0.0138011088931582], + [0.01467121445635504], + [0.01605311140503505], + [0.03067687144383888], + [0.01835336741416609], + [0.01951047494908151], + [0.02134818687672324], + [0.02126077850204813], + [0.01271990463804815], + [0.01352184453103644], + [0.01479548113102975], + [0.008898103672735205], + [0.005323560008197935], + [0.005659189501089015], + [0.006192234446128948], + [0.010061425331433], + [0.006019552422614294], + [0.006399061496227086], + [0.007001795754005012], + [0.01338015932252603], + [0.008005085543223482], + [0.008509774660521757], + [0.009311319186526256], + [0.04013232935583105], + [0.02401038147590574], + [0.02552414146855538], + [0.02792828690027832], + [0.01679626299677307], + [0.01004887302569606], + [0.0106824148947738], + [0.01168860266413242], + [0.01899217543474583], + [0.01136264414662781], + [0.01207901411089265], + [0.0132167490129733], + [0.02525669324448205], + [0.01511058165209229], + [0.0160632443156804], + [0.01757625800461362], + [0.02112670632168297], + [0.02457406668036405], + [0.01477901198657192], + [0.008841991514828857], + [0.009399444257673735], + [0.01028478768834936], + [0.009997977173519282], + [0.01062831025955897], + [0.01162940185705429], + [0.02222333457585675], + [0.01329578296096281], + [0.01413402971424556], + [0.01546532867335853] ], - "Log Likelihood":-3569.784907463222, + "Log Likelihood":-2978.298667783946, "Rate Distributions":{ "non-synonymous/synonymous rate ratio for *test*": [ -[0.248895715005128, 1] +[0.2932353608697501, 1] ] }, "display order":1, - "estimated parameters":43 + "estimated parameters":27 }, "Nucleotide GTR":{ - "AIC-c":7431.204675852382, + "AIC-c":6152.529196194525, "Equilibrium frequencies": [ -[0.3476574973769445], - [0.1861228958532913], - [0.2296428082660462], - [0.2365767985037179] +[0.3478363400542389], + [0.184883858035609], + [0.2307510906732697], + [0.2365287112368824] ], - "Log Likelihood":-3679.541894127126, + "Log Likelihood":-3056.215005465311, "Rate Distributions":{ - "Substitution rate from nucleotide A to nucleotide C":0.2089484190839437, + "Substitution rate from nucleotide A to nucleotide C":0.1810796022573985, "Substitution rate from nucleotide A to nucleotide G":1, - "Substitution rate from nucleotide A to nucleotide T":0.1069376934774225, - "Substitution rate from nucleotide C to nucleotide G":0.01756475048192434, - "Substitution rate from nucleotide C to nucleotide T":1.483513244796427, - "Substitution rate from nucleotide G to nucleotide T":0.1186889750817524 + "Substitution rate from nucleotide A to nucleotide T":0.08708610799393901, + "Substitution rate from nucleotide C to nucleotide G":0.02931879134098465, + "Substitution rate from nucleotide C to nucleotide T":1.419136867291551, + "Substitution rate from nucleotide G to nucleotide T":0.1065442350926398 }, "display order":0, - "estimated parameters":36 + "estimated parameters":20 } }, "input":{ - "file name":"/tmp/tmpu23i1b/job_working_directory/000/3/working/meme_input.fa", - "number of sequences":13, + "file name":"/tmp/tmpdqyv1aux/job_working_directory/000/3/working/./meme_input.fa", + "number of sequences":5, "number of sites":566, "partition count":1, "trees":{ - "0":"(((((CHICKEN_HEBEI_326_2005:0.02100885319673648,(SWINE_ANHUI_1_2004:0.007702393698306516)Node7:0.002095219592954275)Node5:0.003887237703073042)Node4:0.003404921392531202,(((CHICKEN_HONGKONG_915_97:-1,(GOOSE_HONGKONG_W355_97:-1)Node13:0.002899766890966483)Node11:0.001306376767766534,HONGKONG_1_97_98:0.003844928589233716)Node10:0.000182535836694054,HONGKONG_1_538_97:-1)Node9:0.02096173714686362)Node3:0.003130608143291779,(((GOOSE_SHANTOU_2216_2005:0.006207842095177651)Node19:0.002530613798219486,PEREGRINEFALCON_HK_D0028_2004:0.003608296348267232)Node18:0.003288900909856382,CK_HK_WF157_2003:0.00663129750258774)Node17:0.004655295319725731)Node2:0.0116808817874948,(((HUMAN_VIETNAM_CL105_2005:0.006521522005742001)Node25:0.001967887030302483,HUMAN_VIETNAM_3062_2004:0.001641397323851184)Node24:0.0003125512332168847,MALLARD_VIETNAM_16_2003:0.003244216605281072)Node23:0.0004125980823087554,CHICKEN_CK_160_2005:0.006168335080088849)" + "0":"(((((CHICKEN_HEBEI_326_2005:0.02100885319673648,(SWINE_ANHUI_1_2004:0.007702393698306516)Node7:0.002095219592954275)Node5:0.003887237703073042)Node4:-1)Node3:0.003130608143291779,(CK_HK_WF157_2003:0.00663129750258774)Node9:0.004655295319725731)Node2:0.0116808817874948,(MALLARD_VIETNAM_16_2003:0.003244216605281072)Node11:0.0004125980823087554,CHICKEN_CK_160_2005:0.006168335080088849)" } }, "tested":{ "0":{ "CHICKEN_CK_160_2005":"test", "CHICKEN_HEBEI_326_2005":"test", - "CHICKEN_HONGKONG_915_97":"test", "CK_HK_WF157_2003":"test", - "GOOSE_HONGKONG_W355_97":"test", - "GOOSE_SHANTOU_2216_2005":"test", - "HONGKONG_1_538_97":"test", - "HONGKONG_1_97_98":"test", - "HUMAN_VIETNAM_3062_2004":"test", - "HUMAN_VIETNAM_CL105_2005":"test", "MALLARD_VIETNAM_16_2003":"test", - "Node10":"test", "Node11":"test", - "Node13":"test", - "Node17":"test", - "Node18":"test", - "Node19":"test", "Node2":"test", - "Node23":"test", - "Node24":"test", - "Node25":"test", "Node3":"test", "Node4":"test", "Node5":"test", "Node7":"test", "Node9":"test", - "PEREGRINEFALCON_HK_D0028_2004":"test", "SWINE_ANHUI_1_2004":"test" } }, "timers":{ "MEME analysis":{ "order":2, - "timer":249 + "timer":437 }, "Model fitting":{ "order":1, - "timer":2 + "timer":4 }, "Total time":{ "order":0, - "timer":252 + "timer":442 } } } \ No newline at end of file