Mercurial > repos > iuc > hyphy_prime

annotate test-data/relax-out1.json @ 17:6d29207a32c5 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
author iuc
date Tue, 27 Apr 2021 18:04:23 +0000
parents 725ef5f6d749
children f207757f9ca2
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
725ef5f6d749 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 751182d5067ac8378199058d9152ebfcaeb4c4b5"
iuc
parents:
diff changeset
1 {
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6d29207a32c5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
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2 "analysis":0,
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iuc
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3 "branch attributes":{
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iuc
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4 "0":{
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5 "Baboon":{
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6d29207a32c5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
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6 "General descriptive":0.001858767762813579,
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7 "MG94xREV with separate rates for branch sets":0.001769472024099301,
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diff changeset
8 "Nucleotide GTR":0.001680040630127455,
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9 "RELAX alternative":0.001872256662230973,
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10 "RELAX null":0.001855569334462731,
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11 "RELAX partitioned descriptive":0.001898170574782418,
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12 "k (general descriptive)":0.09971581394819819,
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iuc
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13 "original name":"Baboon"
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14 },
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15 "Cat":{
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16 "General descriptive":0.3644803308678196,
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17 "MG94xREV with separate rates for branch sets":0.2796030091674721,
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18 "Nucleotide GTR":0.2660909938917123,
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19 "RELAX alternative":0.3689219388980864,
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20 "RELAX null":0.3256077554105627,
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21 "RELAX partitioned descriptive":0.3717219559832593,
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22 "k (general descriptive)":2.314507643873676,
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diff changeset
23 "original name":"Cat"
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24 },
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25 "Chimp":{
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26 "General descriptive":0.001848680051431209,
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27 "MG94xREV with separate rates for branch sets":0.001825434296531533,
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28 "Nucleotide GTR":0.001818373670119325,
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29 "RELAX alternative":0.001831703934281931,
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30 "RELAX null":0.00183525802483954,
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31 "RELAX partitioned descriptive":0.001832717232153088,
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32 "k (general descriptive)":5.261186652622472,
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iuc
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33 "original name":"Chimp"
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34 },
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35 "Cow":{
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36 "General descriptive":0.3733627618450006,
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37 "MG94xREV with separate rates for branch sets":0.2520490246808783,
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38 "Nucleotide GTR":0.2481025999892287,
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39 "RELAX alternative":0.342739998512865,
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40 "RELAX null":0.2948256709356563,
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41 "RELAX partitioned descriptive":0.3466331923230422,
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42 "k (general descriptive)":2.846155982935764,
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43 "original name":"Cow"
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44 },
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45 "Horse":{
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46 "General descriptive":0.2802176313870697,
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47 "MG94xREV with separate rates for branch sets":0.2158304510870495,
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48 "Nucleotide GTR":0.2090310577070883,
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49 "RELAX alternative":0.3058487498567987,
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50 "RELAX null":0.2559911331878715,
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51 "RELAX partitioned descriptive":0.3034694616209482,
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52 "k (general descriptive)":1.926646959057857,
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53 "original name":"Horse"
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54 },
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55 "Human":{
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56 "General descriptive":0,
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57 "MG94xREV with separate rates for branch sets":0,
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58 "Nucleotide GTR":0,
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59 "RELAX alternative":0,
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60 "RELAX null":0,
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61 "RELAX partitioned descriptive":0,
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62 "k (general descriptive)":1.462532487172471,
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63 "original name":"Human"
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64 },
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65 "Mouse":{
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66 "General descriptive":0.1307950021191255,
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67 "MG94xREV with separate rates for branch sets":0.1197727080219867,
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68 "Nucleotide GTR":0.1180171198334285,
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69 "RELAX alternative":0.1346501492117481,
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70 "RELAX null":0.1468861666244963,
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71 "RELAX partitioned descriptive":0.1475623398849678,
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72 "k (general descriptive)":0.4639609139295889,
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73 "original name":"Mouse"
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74 },
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75 "Node1":{
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76 "General descriptive":0.350050900813081,
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77 "MG94xREV with separate rates for branch sets":0.2857356440257563,
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78 "Nucleotide GTR":0.2767237570684924,
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79 "RELAX alternative":0.3856490868629754,
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80 "RELAX null":0.4521046025119397,
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102 "Node3":{
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129 "Pig":{
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132 "Nucleotide GTR":0.1871893456388788,
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iuc
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136 "k (general descriptive)":1.577441472516679,
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iuc
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137 "original name":"Pig"
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139 "Rat":{
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140 "General descriptive":0.07164210204456434,
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iuc
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142 "Nucleotide GTR":0.06661283005976348,
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143 "RELAX alternative":0.07247047023746757,
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145 "RELAX partitioned descriptive":0.07560655472076994,
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iuc
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146 "k (general descriptive)":1.318174884032695,
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iuc
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147 "original name":"Rat"
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148 },
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149 "RhMonkey":{
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150 "General descriptive":0.003674505194636419,
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iuc
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152 "Nucleotide GTR":0.003775170135617877,
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153 "RELAX alternative":0.003636176595806718,
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154 "RELAX null":0.003665938723426083,
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iuc
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155 "RELAX partitioned descriptive":0.003624376345656283,
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iuc
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156 "k (general descriptive)":5.171610533872274,
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157 "original name":"RhMonkey"
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725ef5f6d749 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 751182d5067ac8378199058d9152ebfcaeb4c4b5"
iuc
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diff changeset
158 }
725ef5f6d749 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 751182d5067ac8378199058d9152ebfcaeb4c4b5"
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iuc
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160 "attributes":{
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161 "General descriptive":{
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diff changeset
162 "attribute type":"branch length",
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diff changeset
163 "display order":4
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iuc
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diff changeset
164 },
725ef5f6d749 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 751182d5067ac8378199058d9152ebfcaeb4c4b5"
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diff changeset
165 "MG94xREV with separate rates for branch sets":{
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diff changeset
166 "attribute type":"branch length",
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diff changeset
167 "display order":1
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diff changeset
168 },
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6d29207a32c5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
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diff changeset
169 "Nucleotide GTR":{
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725ef5f6d749 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 751182d5067ac8378199058d9152ebfcaeb4c4b5"
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diff changeset
170 "attribute type":"branch length",
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6d29207a32c5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
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171 "display order":0
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diff changeset
172 },
725ef5f6d749 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 751182d5067ac8378199058d9152ebfcaeb4c4b5"
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diff changeset
173 "RELAX alternative":{
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diff changeset
174 "attribute type":"branch length",
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175 "display order":2
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diff changeset
176 },
725ef5f6d749 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 751182d5067ac8378199058d9152ebfcaeb4c4b5"
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diff changeset
177 "RELAX null":{
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diff changeset
178 "attribute type":"branch length",
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diff changeset
179 "display order":3
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diff changeset
180 },
725ef5f6d749 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 751182d5067ac8378199058d9152ebfcaeb4c4b5"
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diff changeset
181 "RELAX partitioned descriptive":{
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diff changeset
182 "attribute type":"branch length",
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diff changeset
183 "display order":5
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184 },
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diff changeset
185 "k (general descriptive)":{
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186 "attribute type":"branch label",
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diff changeset
187 "display order":4
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diff changeset
188 },
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iuc
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diff changeset
189 "original name":{
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diff changeset
190 "attribute type":"node label",
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diff changeset
191 "display order":-1
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diff changeset
192 }
725ef5f6d749 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 751182d5067ac8378199058d9152ebfcaeb4c4b5"
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diff changeset
193 }
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194 },
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diff changeset
195 "data partitions":{
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196 "0":{
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diff changeset
197 "coverage": [
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diff changeset
198 [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142, 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155, 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168, 169, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 180, 181, 182, 183, 184, 185, 186]
6d29207a32c5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
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diff changeset
199 ],
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diff changeset
200 "name":"relax.filter.default"
6d29207a32c5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
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diff changeset
201 }
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diff changeset
202 },
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iuc
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diff changeset
203 "fits":{
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iuc
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diff changeset
204 "General descriptive":{
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iuc
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diff changeset
205 "AIC-c":6945.891353881681,
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iuc
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diff changeset
206 "Log Likelihood":-3420.486931066253,
6d29207a32c5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
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diff changeset
207 "Rate Distributions":{
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iuc
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diff changeset
208 "Shared":{
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iuc
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diff changeset
209 "0":{
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iuc
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diff changeset
210 "omega":2.202835393423959e-18,
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iuc
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diff changeset
211 "proportion":0.4487473029633234
6d29207a32c5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
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diff changeset
212 },
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iuc
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diff changeset
213 "1":{
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iuc
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diff changeset
214 "omega":2.202835393423959e-18,
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iuc
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diff changeset
215 "proportion":0.09729227592412616
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iuc
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diff changeset
216 },
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iuc
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diff changeset
217 "2":{
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iuc
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diff changeset
218 "omega":2.202835210940273,
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iuc
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diff changeset
219 "proportion":0.4539604211125504
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iuc
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diff changeset
220 }
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iuc
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diff changeset
221 }
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iuc
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diff changeset
222 },
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iuc
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diff changeset
223 "display order":4,
6d29207a32c5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
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diff changeset
224 "estimated parameters":51
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iuc
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diff changeset
225 },
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iuc
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diff changeset
226 "MG94xREV with separate rates for branch sets":{
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iuc
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diff changeset
227 "AIC-c":6987.565999172035,
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iuc
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diff changeset
228 "Equilibrium frequencies": [
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diff changeset
229 [0.04876086397632926],
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diff changeset
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289 [0.01189287130232129]
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290 ],
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iuc
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diff changeset
291 "Log Likelihood":-3461.208149286616,
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iuc
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diff changeset
292 "Rate Distributions":{
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iuc
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diff changeset
293 "non-synonymous/synonymous rate ratio for *Reference*": [
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iuc
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diff changeset
294 [0.7682335289209781, 1]
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iuc
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295 ],
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iuc
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diff changeset
296 "non-synonymous/synonymous rate ratio for *Test*": [
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iuc
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diff changeset
297 [1.605439824256426, 1]
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diff changeset
298 ]
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diff changeset
299 },
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iuc
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diff changeset
300 "display order":1,
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iuc
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diff changeset
301 "estimated parameters":32
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iuc
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diff changeset
302 },
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iuc
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diff changeset
303 "Nucleotide GTR":{
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iuc
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diff changeset
304 "AIC-c":7112.857310169033,
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iuc
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diff changeset
305 "Equilibrium frequencies": [
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iuc
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diff changeset
306 [0.3592490842490842],
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iuc
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307 [0.181959706959707],
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308 [0.240018315018315],
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iuc
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diff changeset
309 [0.2187728937728937]
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diff changeset
310 ],
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iuc
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diff changeset
311 "Log Likelihood":-3532.32122446679,
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iuc
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diff changeset
312 "Rate Distributions":{
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iuc
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diff changeset
313 "Substitution rate from nucleotide A to nucleotide C":0.5501644800943087,
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iuc
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diff changeset
314 "Substitution rate from nucleotide A to nucleotide G":1,
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iuc
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diff changeset
315 "Substitution rate from nucleotide A to nucleotide T":0.2647746107611847,
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iuc
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diff changeset
316 "Substitution rate from nucleotide C to nucleotide G":0.4917423221832032,
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iuc
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diff changeset
317 "Substitution rate from nucleotide C to nucleotide T":1.02837595903795,
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iuc
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diff changeset
318 "Substitution rate from nucleotide G to nucleotide T":0.304509117524575
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iuc
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diff changeset
319 },
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iuc
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diff changeset
320 "display order":0,
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iuc
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diff changeset
321 "estimated parameters":24
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iuc
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diff changeset
322 },
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iuc
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diff changeset
323 "RELAX alternative":{
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iuc
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diff changeset
324 "AIC-c":6931.922980697387,
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iuc
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diff changeset
325 "Log Likelihood":-3429.234812770952,
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iuc
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diff changeset
326 "Rate Distributions":{
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iuc
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diff changeset
327 "Reference":{
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iuc
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diff changeset
328 "0":{
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iuc
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diff changeset
329 "omega":1.762268314739328e-19,
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iuc
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diff changeset
330 "proportion":0.4504132080156107
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iuc
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diff changeset
331 },
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iuc
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diff changeset
332 "1":{
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iuc
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diff changeset
333 "omega":1.762268314739328e-19,
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diff changeset
334 "proportion":0.08749553114962015
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iuc
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diff changeset
335 },
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iuc
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diff changeset
336 "2":{
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iuc
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diff changeset
337 "omega":2.19971015101232,
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iuc
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diff changeset
338 "proportion":0.4620912608347691
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diff changeset
339 }
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iuc
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diff changeset
340 },
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iuc
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diff changeset
341 "Test":{
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iuc
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342 "0":{
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iuc
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diff changeset
343 "omega":1.054840660215593e-44,
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iuc
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diff changeset
344 "proportion":0.4504132080156107
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iuc
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diff changeset
345 },
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iuc
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diff changeset
346 "1":{
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iuc
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diff changeset
347 "omega":1.054840660215593e-44,
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iuc
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diff changeset
348 "proportion":0.08749553114962015
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iuc
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diff changeset
349 },
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iuc
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diff changeset
350 "2":{
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iuc
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diff changeset
351 "omega":6.350765030542244,
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iuc
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diff changeset
352 "proportion":0.4620912608347691
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353 }
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iuc
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diff changeset
354 }
6d29207a32c5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
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355 },
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iuc
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diff changeset
356 "display order":2,
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iuc
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diff changeset
357 "estimated parameters":36
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iuc
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diff changeset
358 },
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iuc
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diff changeset
359 "RELAX null":{
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iuc
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diff changeset
360 "AIC-c":6946.046672507471,
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iuc
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diff changeset
361 "Log Likelihood":-3437.336313352972,
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iuc
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diff changeset
362 "Rate Distributions":{
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iuc
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363 "Reference":{
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iuc
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364 "0":{
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iuc
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diff changeset
365 "omega":0.1150006822953211,
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iuc
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diff changeset
366 "proportion":0.542405144031307
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367 },
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iuc
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368 "1":{
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iuc
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diff changeset
369 "omega":0.2401508033814633,
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iuc
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diff changeset
370 "proportion":0.08223353569636478
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iuc
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371 },
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iuc
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372 "2":{
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iuc
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373 "omega":3.69263720947284,
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iuc
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diff changeset
374 "proportion":0.3753613202723282
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375 }
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iuc
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376 },
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iuc
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377 "Test":{
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iuc
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378 "0":{
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379 "omega":0.1150006822953211,
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380 "proportion":0.542405144031307
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381 },
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iuc
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382 "1":{
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iuc
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383 "omega":0.2401508033814633,
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iuc
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diff changeset
384 "proportion":0.08223353569636478
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iuc
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385 },
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iuc
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386 "2":{
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iuc
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diff changeset
387 "omega":3.69263720947284,
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iuc
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diff changeset
388 "proportion":0.3753613202723282
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iuc
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389 }
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iuc
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diff changeset
390 }
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iuc
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391 },
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iuc
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diff changeset
392 "display order":3,
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iuc
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diff changeset
393 "estimated parameters":35
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iuc
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394 },
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iuc
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diff changeset
395 "RELAX partitioned descriptive":{
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iuc
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diff changeset
396 "AIC-c":6937.04707353565,
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iuc
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diff changeset
397 "Log Likelihood":-3427.626871923648,
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iuc
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diff changeset
398 "Rate Distributions":{
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iuc
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diff changeset
399 "Reference":{
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iuc
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400 "0":{
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iuc
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diff changeset
401 "omega":0.1943306885168281,
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iuc
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diff changeset
402 "proportion":0.3359458135547653
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iuc
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diff changeset
403 },
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iuc
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404 "1":{
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iuc
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diff changeset
405 "omega":0.2607558478587815,
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iuc
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diff changeset
406 "proportion":0.4332550437039296
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iuc
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diff changeset
407 },
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iuc
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diff changeset
408 "2":{
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iuc
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diff changeset
409 "omega":4.134271224300374,
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iuc
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diff changeset
410 "proportion":0.2307991427413052
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iuc
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diff changeset
411 }
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iuc
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412 },
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iuc
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diff changeset
413 "Test":{
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iuc
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414 "0":{
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iuc
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diff changeset
415 "omega":0,
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iuc
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diff changeset
416 "proportion":0.4753488415962343
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417 },
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iuc
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418 "1":{
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iuc
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diff changeset
419 "omega":0,
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iuc
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diff changeset
420 "proportion":0.03858318603767072
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iuc
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diff changeset
421 },
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iuc
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diff changeset
422 "2":{
6d29207a32c5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
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diff changeset
423 "omega":6.017221959238516,
6d29207a32c5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
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diff changeset
424 "proportion":0.486067972366095
6d29207a32c5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
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diff changeset
425 }
6d29207a32c5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
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diff changeset
426 }
6d29207a32c5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
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diff changeset
427 },
6d29207a32c5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
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diff changeset
428 "display order":5,
6d29207a32c5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
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diff changeset
429 "estimated parameters":40
6d29207a32c5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
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diff changeset
430 }
6d29207a32c5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
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diff changeset
431 },
6d29207a32c5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
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diff changeset
432 "input":{
6d29207a32c5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
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diff changeset
433 "file name":"/tmp/tmpbauyxvdv/job_working_directory/000/3/working/./input.fasta",
6d29207a32c5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
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diff changeset
434 "number of sequences":10,
6d29207a32c5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
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diff changeset
435 "number of sites":187,
6d29207a32c5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
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diff changeset
436 "partition count":1,
6d29207a32c5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
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diff changeset
437 "trees":{
6d29207a32c5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
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diff changeset
438 "0":"((((Pig:0.147969,Cow:0.21343)Node3:0.08509899999999999,Horse:0.165787,Cat:0.264806)Node2:0.058611,((RhMonkey:0.002015,Baboon:0.003108)Node9:0.022733,(Human:0.004349,Chimp:0.000799)Node12:0.011873)Node8:0.101856)Node1:0.340802,Rat:0.050958,Mouse:0.09795)"
6d29207a32c5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
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diff changeset
439 }
6d29207a32c5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
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diff changeset
440 },
6d29207a32c5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
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diff changeset
441 "test results":{
6d29207a32c5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
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diff changeset
442 "LRT":16.20300116404087,
6d29207a32c5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
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diff changeset
443 "p-value":5.690389451429301e-05,
6d29207a32c5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
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diff changeset
444 "relaxation or intensification parameter":2.344938789085876
6d29207a32c5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
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diff changeset
445 },
6d29207a32c5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
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diff changeset
446 "tested":{
6d29207a32c5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
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diff changeset
447 "0":{
6d29207a32c5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
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diff changeset
448 "Baboon":"Reference",
6d29207a32c5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
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diff changeset
449 "Cat":"Test",
6d29207a32c5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
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diff changeset
450 "Chimp":"Reference",
6d29207a32c5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 0
diff changeset
451 "Cow":"Test",
6d29207a32c5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
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diff changeset
452 "Horse":"Test",
6d29207a32c5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
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diff changeset
453 "Human":"Reference",
6d29207a32c5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 0
diff changeset
454 "Mouse":"Reference",
6d29207a32c5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
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diff changeset
455 "Node1":"Reference",
6d29207a32c5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
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diff changeset
456 "Node12":"Reference",
6d29207a32c5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
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diff changeset
457 "Node2":"Reference",
6d29207a32c5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
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diff changeset
458 "Node3":"Reference",
6d29207a32c5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
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diff changeset
459 "Node8":"Reference",
6d29207a32c5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
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diff changeset
460 "Node9":"Reference",
6d29207a32c5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
parents: 0
diff changeset
461 "Pig":"Reference",
6d29207a32c5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
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diff changeset
462 "Rat":"Reference",
6d29207a32c5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
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diff changeset
463 "RhMonkey":"Reference"
6d29207a32c5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
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diff changeset
464 }
6d29207a32c5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
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diff changeset
465 },
6d29207a32c5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
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diff changeset
466 "timers":{
6d29207a32c5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
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diff changeset
467 "General descriptive model fitting":{
6d29207a32c5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
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diff changeset
468 "order":2,
6d29207a32c5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
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diff changeset
469 "timer":132
6d29207a32c5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
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diff changeset
470 },
6d29207a32c5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
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diff changeset
471 "Overall":{
6d29207a32c5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
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diff changeset
472 "order":0,
6d29207a32c5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
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diff changeset
473 "timer":324
6d29207a32c5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
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diff changeset
474 },
6d29207a32c5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
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diff changeset
475 "Preliminary model fitting":{
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iuc
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diff changeset
476 "order":1,
6d29207a32c5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
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diff changeset
477 "timer":8
6d29207a32c5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
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diff changeset
478 },
6d29207a32c5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
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diff changeset
479 "RELAX alternative model fitting":{
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iuc
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diff changeset
480 "order":3,
6d29207a32c5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
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diff changeset
481 "timer":65
6d29207a32c5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
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diff changeset
482 },
6d29207a32c5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
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diff changeset
483 "RELAX null model fitting":{
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iuc
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diff changeset
484 "order":4,
6d29207a32c5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
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diff changeset
485 "timer":66
6d29207a32c5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
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diff changeset
486 },
6d29207a32c5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
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diff changeset
487 "RELAX partitioned descriptive":{
6d29207a32c5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
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diff changeset
488 "order":5,
6d29207a32c5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
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diff changeset
489 "timer":53
6d29207a32c5 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
iuc
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diff changeset
490 }
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725ef5f6d749 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 751182d5067ac8378199058d9152ebfcaeb4c4b5"
iuc
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diff changeset
491 }
725ef5f6d749 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 751182d5067ac8378199058d9152ebfcaeb4c4b5"
iuc
parents:
diff changeset
492 }