Mercurial > repos > iuc > hyphy_prime

comparison test-data/summary/nsp7.SLAC.json @ 18:966ba45cbd44 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 00684bab4c9e740cfa6a39abc444380e6818fd97"
author iuc
date Wed, 09 Jun 2021 07:11:05 +0000
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17:6d29207a32c5 18:966ba45cbd44
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798 "RESOLVED": [
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840 [1, 2, 0, 2, 0.3333333333333333, 0, 1, 1.238723396333347, 0.4444444444444445, 1, 0.8072827258773227],
841 [0.7591792736066558, 2.228558008412809, 0, 1, 0.2540984035562568, 0, 0.4487206508536007, 0.5558407686302825, 0.7459015964437432, 1, 0.8072827258773227],
842 [0.7774053520985391, 2.222594647901461, 1, 1, 0.2591351173661797, 1.286330223094793, 0.4499245964369546, -1.036075218565919, 0.9328489909476163, 0.4511192256799758, 0.8072827258773227],
843 [0.9994484362811826, 2.000551563718818, 0, 2, 0.3331494787603942, 0, 0.9997242941752562, 1.238381873077732, 0.4446896176775341, 1, 0.8072827258773227],
844 [0.9994481747395748, 2.000551825260426, 1, 3, 0.3331493915798582, 1.000552129939673, 1.499586245214852, 0.6181652341598769, 0.5929196001294283, 0.8022510405191996, 0.8072827258773227],
845 [0.7583810142522311, 1.928616254392244, 1, 0, 0.282241081188302, 1.318598410570717, 0, -1.633378701541912, 1, 0.282241081188302, 0.8072827258773227],
846 [1, 2, 1, 0, 0.3333333333333333, 1, 0, -1.238723396333347, 1, 0.3333333333333333, 0.8072827258773227],
847 [0.7778149173745659, 2.222185082625434, 0, 1, 0.2592716391248553, 0, 0.4500075208940449, 0.5574348446574212, 0.7407283608751447, 1, 0.8072827258773227],
848 [0.7589988721443262, 1.927998396500149, 1, 1, 0.2824710248132193, 1.317525014463851, 0.5186726305453764, -0.9895571381764842, 0.9202101201409696, 0.4851521697674084, 0.8072827258773227],
849 [0.7591803138316288, 2.228556968187836, 0, 1, 0.2540987517210634, 0, 0.4487208603032283, 0.5558410280804365, 0.7459012482789367, 1, 0.8072827258773227],
850 [0.002011174674192812, 2.997988825325807, 0, 1, 0.0006703915580642705, 0, 0.3335569470947994, 0.4131847943758526, 0.9993296084419357, 1, 0.8072827258773227],
851 [1, 2, 1, 0, 0.3333333333333333, 1, 0, -1.238723396333347, 1, 0.3333333333333333, 0.8072827258773227],
852 [1.001373090881763, 1.838826056763581, 1, 2, 0.3525714356023054, 0.9986287919115604, 1.087650456465737, 0.1102732186637976, 0.714734073356012, 0.7286214176809162, 0.8072827258773227],
853 [1.839148713197612, 1.160280205411443, 1, 0, 0.6131662936858302, 0.5437298206632585, 0, -0.6735308501397135, 1, 0.6131662936858302, 0.8072827258773227],
854 [0.9982854918531924, 2.001714508146808, 0, 1, 0.3327618306177308, 0, 0.4995717400908497, 0.6188312025974977, 0.6672381693822692, 1, 0.8072827258773227],
855 [1, 1.999590049260449, 2, 1, 0.3333788896407863, 2, 0.5001025086966456, -1.857958114579159, 0.9629477754516735, 0.259320003077718, 0.8072827258773227],
856 [0.9994482870394445, 2.000551712960556, 2, 3, 0.3331494290131482, 2.001104035031547, 1.499586329393301, -0.6212417156495161, 0.7903958324567839, 0.5387313323355689, 0.8072827258773227],
857 [1.452946857989199, 1.53954183823159, 0, 0, 0.4855312769682721, 0, 0, 0, 1, 1, 0.8072827258773227],
858 [0.9994291891847041, 2.000570810815296, 0, 1, 0.333143063061568, 0, 0.4998573380126787, 0.6191849794252114, 0.666856936938432, 1, 0.8072827258773227],
859 [1, 2, 2, 1, 0.3333333333333333, 2, 0.5, -1.858085094500021, 0.962962962962963, 0.2592592592592592, 0.8072827258773227],
860 [0.01986879658595536, 2.980092816461452, 1, 4, 0.0066230169411309, 50.33017453643213, 1.342240073163084, -60.68250055769608, 0.9995671379428394, 0.03267933670752199, 0.8072827258773227],
861 [0.6766954835493494, 1.489837183700754, 1, 1, 0.3123403093701111, 1.477769579242467, 0.6712142849838136, -0.9990989134347219, 0.9024435311425832, 0.5271241498828055, 0.8072827258773227],
862 [0.9988589340386834, 2.001102589193153, 1, 2, 0.332957248385846, 1.001142369480246, 0.9994490091616954, -0.002097605045010715, 0.7412420457911157, 0.7032019741740851, 0.8072827258773227],
863 [1, 2, 1, 1, 0.3333333333333333, 1, 0.5, -0.6193616981666737, 0.8888888888888891, 0.5555555555555555, 0.8072827258773227],
864 [0.9941557145356668, 2.005844285464333, 1, 1, 0.3313852381785556, 1.005878641925891, 0.4985431856533718, -0.6284482994742232, 0.8901838239173419, 0.5529543002744532, 0.8072827258773227],
865 [0.8400160328031669, 2.15998396719683, 2, 2, 0.2800053442677226, 2.380906937366327, 0.925932798749218, -1.802310506564972, 0.9306280598656467, 0.3132329887935226, 0.8072827258773227],
866 [0.2433476859724634, 2.756652314027536, 0, 1, 0.08111589532415447, 0, 0.3627588415526279, 0.4493578642580219, 0.9188841046758456, 1, 0.8072827258773227],
867 [0.8394457545024913, 2.160554245497506, 3, 0, 0.2798152515008307, 3.573786613261258, 0, -4.426933091349637, 0.9999999999999999, 0.02190857581757633, 0.8072827258773227],
868 [0.6772807471460363, 2.310582111963777, 1, 2, 0.2266773205741516, 1.476492583339858, 0.8655827419611539, -0.7567483135660945, 0.8691467206701469, 0.5375314105635132, 0.8072827258773227],
869 [0.9981473154961721, 2.001852684503828, 1, 1, 0.3327157718320574, 1.00185612331473, 0.4995372575319429, -0.6222341314647692, 0.8893002151741984, 0.554731758838313, 0.8072827258773227],
870 [0.7772449850526268, 2.215262948819313, 0, 1, 0.2597303005465943, 0, 0.4514136800477697, 0.5591766869001084, 0.7402696994534057, 1, 0.8072827258773227],
871 [0.7585890037024779, 1.929979761612837, 1, 2, 0.2821534689716262, 1.318236878097701, 1.036280296705624, -0.3492662141205336, 0.8060930624992708, 0.6300910680854303, 0.8072827258773227],
872 [0.7588011262779647, 1.928996740628306, 0, 1, 0.2823133151569042, 0, 0.5184041937127813, 0.6421594035093471, 0.7176866848430958, 1, 0.8072827258773227],
873 [0.01517270281839815, 2.984827297181602, 0, 3, 0.005057567606132718, 0, 1.005083276621306, 1.245020170014193, 0.9849039047844019, 1, 0.8072827258773227],
874 [1.823625347374459, 1.176316824082454, 6, 2, 0.6078868335281348, 3.290149486372528, 1.700222218244675, -1.969480105498335, 0.8851352218907108, 0.3320935283677464, 0.8072827258773227],
875 [0.8396943081030963, 2.160305691896901, 2, 2, 0.2798981027010323, 2.381819170024007, 0.925794903703586, -1.803611324320203, 0.9307006825509567, 0.3130462000208031, 0.8072827258773227],
876 [0.8391237623245899, 2.160876237675408, 1, 2, 0.2797079207748635, 1.191719320675345, 0.9255504619512719, -0.329709592676855, 0.8090571863713292, 0.626297574093959, 0.8072827258773227],
877 [0.9053481263261418, 2.094589009010901, 1, 2, 0.3017890327306562, 1.104547489436965, 0.9548412559199058, -0.1854446140345247, 0.7817419894457323, 0.659623162500077, 0.8072827258773227],
878 [1, 2, 2, 2, 0.3333333333333333, 2, 1, -1.238723396333347, 0.8888888888888891, 0.4074074074074072, 0.8072827258773227],
879 [0.9997195765670419, 2.000280423432959, 3, 2, 0.3332398588556805, 3.000841506276953, 0.9998598079400899, -2.478662845364709, 0.9547786543452442, 0.2097380819215824, 0.8072827258773227],
880 [1.536404257421061, 1.241961579621288, 2, 0, 0.5529884642753194, 1.301740730240561, 0, -1.61249669850904, 1, 0.3057962416215763, 0.8072827258773227],
881 [0.7579583226361453, 1.402113362058995, 1, 0, 0.3508949855722585, 1.319333755083056, 0, -1.634289589993712, 1, 0.3508949855722585, 0.8072827258773227]
882 ]
883 }
884 }
885 },
886 "headers": [
887 ["ES", "Expected synonymous sites"],
888 ["EN", "Expected non-synonymous sites"],
889 ["S", "Inferred synonymous substitutions"],
890 ["N", "Inferred non-synonymous substitutions"],
891 ["P[S]", "Expected proportion of synonymous sites"],
892 ["dS", "Inferred synonymous susbsitution rate"],
893 ["dN", "Inferred non-synonymous susbsitution rate"],
894 ["dN-dS", "Scaled by the length of the tested branches"],
895 ["P [dN/dS > 1]", "Binomial probability that S is no greater than the observed value, with P<sub>s</sub> probability of success"],
896 ["P [dN/dS < 1]", "Binomial probability that S is no less than the observed value, with P<sub>s</sub> probability of success"],
897 ["Total branch length", "The total length of branches contributing to inference at this site, and used to scale dN-dS"]
898 ]
899 },
900 "analysis":{
901 "authors":"Sergei L Kosakovsky Pond and Simon DW Frost",
902 "citation":"Not So Different After All: A Comparison of Methods for Detecting Amino Acid Sites Under Selection (2005). _Mol Biol Evol_ 22 (5): 1208-1222",
903 "contact":"spond@temple.edu",
904 "info":"SLAC (Single Likelihood Ancestor Counting)\n uses a maximum likelihood ancestral state reconstruction\n and minimum path substitution counting to estimate site - level\n dS and dN,\n and applies a simple binomial - based test to test\n if dS differs drom dN.\n The estimates aggregate information over all branches,\n so the signal is derived from\n pervasive diversification or conservation. A subset of branches can be selected\n for testing as well.\n Multiple partitions within a NEXUS file are also supported\n for recombination - aware analysis.\n ",
905 "requirements":"in-frame codon alignment and a phylogenetic tree",
906 "version":"2.00"
907 },
908 "branch attributes":{
909 "0":{
910 "Node126":{
911 "Global MG94xREV":0.004136417827218518,
912 "Nucleotide GTR":0.004026916786386125,
913 "amino-acid": [
914 ["S", "K", "M", "S", "D", "V", "K", "C", "T", "S", "V", "V", "L", "L", "S", "V", "L", "Q", "Q", "L", "R", "V", "E", "S", "S", "S", "K", "L", "W", "A", "Q", "C", "V", "Q", "L", "H", "N", "D", "I", "L", "L", "A", "K", "D", "T", "T", "E", "A", "F", "E", "K", "M", "V", "S", "L", "L", "S", "V", "L", "L", "S", "M", "Q", "C", "A", "V", "D", "I", "N", "K", "L", "C", "E", "E", "M", "L", "D", "N", "R", "A", "T", "L", "Q"]
915 ],
916 "codon": [
917 ["TCT", "AAA", "ATG", "TCA", "GAT", "GTA", "AAG", "TGC", "ACA", "TCA", "GTA", "GTC", "TTA", "CTC", "TCA", "GTT", "TTG", "CAA", "CAA", "CTC", "AGA", "GTA", "GAA", "TCA", "TCA", "TCT", "AAA", "TTG", "TGG", "GCT", "CAA", "TGT", "GTC", "CAG", "TTA", "CAC", "AAT", "GAC", "ATT", "CTC", "TTA", "GCT", "AAA", "GAT", "ACT", "ACT", "GAA", "GCC", "TTT", "GAA", "AAA", "ATG", "GTT", "TCA", "CTA", "CTT", "TCT", "GTT", "TTG", "CTT", "TCC", "ATG", "CAG", "TGT", "GCT", "GTA", "GAC", "ATA", "AAC", "AAG", "CTT", "TGT", "GAA", "GAA", "ATG", "CTG", "GAC", "AAC", "AGG", "GCA", "ACC", "TTA", "CAA"]
918 ],
919 "nonsynonymous substitution count": [
920 [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
921 ],
922 "synonymous substitution count": [
923 [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
924 ]
925 },
926 "Node13":{
927 "Global MG94xREV":0.004138233218455412,
928 "Nucleotide GTR":0.004028684119801425,
929 "amino-acid": [
930 ["S", "K", "M", "S", "D", "V", "K", "C", "T", "S", "V", "V", "L", "L", "S", "V", "L", "Q", "Q", "L", "R", "V", "E", "S", "S", "S", "K", "L", "W", "A", "Q", "C", "V", "Q", "L", "H", "N", "D", "I", "L", "L", "A", "K", "D", "T", "T", "E", "A", "F", "E", "K", "M", "V", "S", "L", "L", "S", "V", "L", "L", "S", "M", "Q", "G", "A", "V", "D", "I", "N", "K", "L", "C", "E", "E", "M", "L", "D", "N", "R", "A", "T", "L", "Q"]
931 ],
932 "codon": [
933 ["TCT", "AAA", "ATG", "TCA", "GAT", "GTA", "AAG", "TGC", "ACA", "TCA", "GTA", "GTC", "TTA", "CTT", "TCA", "GTT", "TTG", "CAA", "CAA", "CTC", "AGA", "GTA", "GAA", "TCA", "TCA", "TCT", "AAA", "TTG", "TGG", "GCT", "CAA", "TGT", "GTC", "CAG", "TTA", "CAC", "AAT", "GAC", "ATT", "CTC", "TTA", "GCT", "AAA", "GAT", "ACT", "ACT", "GAA", "GCC", "TTT", "GAA", "AAA", "ATG", "GTT", "TCA", "CTA", "CTT", "TCT", "GTT", "TTG", "CTT", "TCC", "ATG", "CAG", "GGT", "GCT", "GTA", "GAC", "ATA", "AAC", "AAG", "CTT", "TGT", "GAA", "GAA", "ATG", "CTG", "GAC", "AAC", "AGG", "GCA", "ACC", "TTA", "CAA"]
934 ],
935 "nonsynonymous substitution count": [
936 [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
937 ],
938 "synonymous substitution count": [
939 [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
940 ]
941 },
942 "Node133":{
943 "Global MG94xREV":0.004131538529738033,
944 "Nucleotide GTR":0.004022166655777783,
945 "amino-acid": [
946 ["S", "K", "M", "S", "D", "V", "K", "C", "T", "S", "V", "V", "L", "L", "S", "V", "L", "Q", "Q", "L", "R", "V", "E", "S", "S", "S", "K", "L", "W", "A", "Q", "C", "V", "Q", "L", "H", "N", "D", "I", "L", "L", "A", "K", "D", "T", "T", "E", "A", "F", "E", "K", "M", "V", "S", "L", "L", "S", "V", "L", "L", "S", "M", "Q", "G", "A", "V", "D", "I", "N", "K", "L", "C", "E", "E", "M", "L", "D", "N", "R", "A", "T", "L", "Q"]
947 ],
948 "codon": [
949 ["TCT", "AAA", "ATG", "TCA", "GAT", "GTA", "AAG", "TGC", "ACA", "TCA", "GTA", "GTC", "TTA", "CTC", "TCA", "GTT", "TTG", "CAA", "CAA", "CTC", "AGA", "GTA", "GAA", "TCA", "TCA", "TCT", "AAA", "TTG", "TGG", "GCT", "CAA", "TGT", "GTC", "CAG", "TTA", "CAC", "AAT", "GAC", "ATT", "CTC", "TTA", "GCT", "AAA", "GAT", "ACT", "ACC", "GAA", "GCC", "TTT", "GAA", "AAA", "ATG", "GTT", "TCA", "CTA", "CTT", "TCT", "GTT", "TTG", "CTT", "TCC", "ATG", "CAG", "GGT", "GCT", "GTA", "GAC", "ATA", "AAC", "AAG", "CTT", "TGT", "GAA", "GAA", "ATG", "CTG", "GAC", "AAC", "AGG", "GCA", "ACC", "TTA", "CAA"]
950 ],
951 "nonsynonymous substitution count": [
952 [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
953 ],
954 "synonymous substitution count": [
955 [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
956 ]
957 },
958 "Node154":{
959 "Global MG94xREV":0.004138233223489171,
960 "Nucleotide GTR":0.004028684124701925,
961 "amino-acid": [
962 ["S", "K", "M", "S", "D", "V", "K", "C", "T", "S", "V", "V", "L", "L", "S", "V", "L", "Q", "Q", "L", "R", "V", "E", "S", "S", "S", "K", "L", "W", "V", "Q", "C", "V", "Q", "L", "H", "N", "D", "I", "L", "L", "A", "K", "D", "T", "T", "E", "A", "F", "E", "K", "M", "V", "S", "L", "L", "S", "V", "L", "L", "S", "M", "Q", "G", "A", "V", "D", "I", "N", "K", "L", "C", "E", "E", "M", "L", "D", "N", "R", "A", "T", "L", "Q"]
963 ],
964 "codon": [
965 ["TCT", "AAA", "ATG", "TCA", "GAT", "GTA", "AAG", "TGC", "ACA", "TCA", "GTA", "GTC", "TTA", "CTC", "TCA", "GTT", "TTG", "CAA", "CAA", "CTC", "AGA", "GTA", "GAA", "TCA", "TCA", "TCT", "AAA", "TTG", "TGG", "GTT", "CAA", "TGT", "GTC", "CAG", "TTA", "CAC", "AAT", "GAC", "ATT", "CTC", "TTA", "GCT", "AAA", "GAT", "ACT", "ACT", "GAA", "GCC", "TTT", "GAA", "AAA", "ATG", "GTT", "TCA", "CTA", "CTT", "TCT", "GTT", "TTG", "CTT", "TCC", "ATG", "CAG", "GGT", "GCT", "GTA", "GAC", "ATA", "AAC", "AAG", "CTT", "TGT", "GAA", "GAA", "ATG", "CTG", "GAC", "AAC", "AGG", "GCA", "ACC", "TTA", "CAA"]
966 ],
967 "nonsynonymous substitution count": [
968 [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
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970 "synonymous substitution count": [
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1461 "nonsynonymous substitution count": [
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1464 "synonymous substitution count": [
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1468 "Node54":{
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1477 "nonsynonymous substitution count": [
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1480 "synonymous substitution count": [
1481 [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
1482 ]
1483 },
1484 "Node61":{
1485 "Global MG94xREV":0.004130904226702948,
1486 "Nucleotide GTR":0.00402154914428684,
1487 "amino-acid": [
1488 ["S", "K", "M", "S", "D", "V", "K", "C", "T", "S", "V", "V", "L", "L", "S", "V", "L", "Q", "Q", "L", "R", "V", "E", "S", "S", "S", "K", "L", "W", "A", "Q", "C", "V", "Q", "L", "H", "N", "D", "I", "L", "L", "A", "K", "D", "T", "T", "E", "A", "F", "E", "K", "M", "V", "S", "L", "L", "S", "V", "L", "L", "S", "M", "Q", "G", "A", "V", "D", "I", "N", "K", "L", "C", "E", "E", "M", "L", "D", "N", "R", "A", "T", "L", "Q"]
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1490 "codon": [
1491 ["TCC", "AAA", "ATG", "TCA", "GAT", "GTA", "AAG", "TGC", "ACA", "TCA", "GTA", "GTC", "TTA", "CTC", "TCA", "GTT", "TTG", "CAA", "CAA", "CTC", "AGA", "GTA", "GAA", "TCA", "TCA", "TCT", "AAA", "TTG", "TGG", "GCT", "CAA", "TGT", "GTC", "CAG", "TTA", "CAC", "AAT", "GAC", "ATT", "CTC", "TTA", "GCT", "AAA", "GAT", "ACT", "ACT", "GAA", "GCC", "TTT", "GAA", "AAA", "ATG", "GTT", "TCA", "CTA", "CTT", "TCT", "GTT", "TTG", "CTT", "TCC", "ATG", "CAG", "GGT", "GCT", "GTA", "GAC", "ATA", "AAC", "AAG", "CTT", "TGT", "GAA", "GAA", "ATG", "CTG", "GAC", "AAC", "AGG", "GCA", "ACC", "TTA", "CAA"]
1492 ],
1493 "nonsynonymous substitution count": [
1494 [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
1495 ],
1496 "synonymous substitution count": [
1497 [1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
1498 ]
1499 },
1500 "Node76":{
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1502 "Nucleotide GTR":0.004027958627015223,
1503 "amino-acid": [
1504 ["S", "K", "M", "S", "D", "V", "K", "C", "T", "S", "V", "V", "L", "L", "S", "V", "L", "Q", "Q", "L", "R", "V", "E", "S", "S", "S", "K", "L", "W", "A", "Q", "C", "V", "Q", "L", "H", "N", "D", "I", "L", "L", "A", "K", "D", "T", "T", "E", "A", "F", "E", "K", "M", "V", "S", "L", "L", "S", "V", "L", "L", "S", "M", "Q", "G", "A", "V", "D", "I", "N", "K", "L", "C", "E", "E", "M", "L", "D", "N", "R", "A", "T", "L", "Q"]
1505 ],
1506 "codon": [
1507 ["TCT", "AAA", "ATG", "TCA", "GAT", "GTA", "AAG", "TGC", "ACA", "TCA", "GTA", "GTC", "TTA", "CTC", "TCA", "GTT", "TTG", "CAA", "CAA", "CTC", "AGA", "GTA", "GAA", "TCA", "TCA", "TCT", "AAA", "TTG", "TGG", "GCT", "CAA", "TGT", "GTC", "CAG", "TTA", "CAC", "AAT", "GAC", "ATT", "CTC", "TTA", "GCT", "AAA", "GAT", "ACT", "ACT", "GAA", "GCC", "TTT", "GAA", "AAA", "ATG", "GTT", "TCA", "CTA", "CTT", "TCT", "GTT", "TTG", "CTT", "TCC", "ATG", "CAG", "GGT", "GCT", "GTA", "GAC", "ATA", "AAC", "AAG", "CTT", "TGT", "GAA", "GAA", "ATG", "CTG", "GAC", "AAT", "AGG", "GCA", "ACC", "TTA", "CAA"]
1508 ],
1509 "nonsynonymous substitution count": [
1510 [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
1511 ],
1512 "synonymous substitution count": [
1513 [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0]
1514 ]
1515 },
1516 "REFERENCE":{
1517 "Global MG94xREV":0,
1518 "Nucleotide GTR":0,
1519 "amino-acid": [
1520 ["S", "K", "M", "S", "D", "V", "K", "C", "T", "S", "V", "V", "L", "L", "S", "V", "L", "Q", "Q", "L", "R", "V", "E", "S", "S", "S", "K", "L", "W", "A", "Q", "C", "V", "Q", "L", "H", "N", "D", "I", "L", "L", "A", "K", "D", "T", "T", "E", "A", "F", "E", "K", "M", "V", "S", "L", "L", "S", "V", "L", "L", "S", "M", "Q", "G", "A", "V", "D", "I", "N", "K", "L", "C", "E", "E", "M", "L", "D", "N", "R", "A", "T", "L", "Q"]
1521 ],
1522 "codon": [
1523 ["TCT", "AAA", "ATG", "TCA", "GAT", "GTA", "AAG", "TGC", "ACA", "TCA", "GTA", "GTC", "TTA", "CTC", "TCA", "GTT", "TTG", "CAA", "CAA", "CTC", "AGA", "GTA", "GAA", "TCA", "TCA", "TCT", "AAA", "TTG", "TGG", "GCT", "CAA", "TGT", "GTC", "CAG", "TTA", "CAC", "AAT", "GAC", "ATT", "CTC", "TTA", "GCT", "AAA", "GAT", "ACT", "ACT", "GAA", "GCC", "TTT", "GAA", "AAA", "ATG", "GTT", "TCA", "CTA", "CTT", "TCT", "GTT", "TTG", "CTT", "TCC", "ATG", "CAG", "GGT", "GCT", "GTA", "GAC", "ATA", "AAC", "AAG", "CTT", "TGT", "GAA", "GAA", "ATG", "CTG", "GAC", "AAC", "AGG", "GCA", "ACC", "TTA", "CAA"]
1524 ],
1525 "nonsynonymous substitution count": [
1526 [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
1527 ],
1528 "original name":"REFERENCE",
1529 "synonymous substitution count": [
1530 [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
1531 ]
1532 },
1533 "epi_isl_1181694_hCoV_19_USA_DE_DHSS_B1064373_2021":{
1534 "Global MG94xREV":0,
1535 "Nucleotide GTR":0,
1536 "amino-acid": [
1537 ["S", "K", "M", "S", "D", "V", "K", "C", "T", "S", "V", "V", "L", "L", "S", "V", "L", "Q", "Q", "L", "R", "V", "E", "S", "S", "S", "K", "L", "W", "A", "Q", "C", "V", "Q", "L", "H", "N", "D", "I", "L", "L", "A", "K", "D", "T", "T", "E", "A", "F", "E", "K", "M", "V", "S", "L", "L", "S", "V", "L", "L", "S", "M", "Q", "G", "A", "V", "D", "I", "N", "K", "L", "C", "E", "E", "M", "L", "D", "N", "R", "A", "T", "L", "Q"]
1538 ],
1539 "codon": [
1540 ["TCT", "AAA", "ATG", "TCA", "GAT", "GTA", "AAG", "TGC", "ACA", "TCA", "GTA", "GTC", "TTA", "CTC", "TCA", "GTT", "TTG", "CAA", "CAA", "CTC", "AGA", "GTA", "GAA", "TCA", "TCA", "TCT", "AAA", "TTG", "TGG", "GCT", "CAA", "TGT", "GTC", "CAG", "TTA", "CAC", "AAT", "GAC", "ATT", "CTC", "TTA", "GCT", "AAA", "GAT", "ACT", "ACT", "GAA", "GCC", "TTT", "GAA", "AAA", "ATG", "GTT", "TCA", "CTA", "CTT", "TCT", "GTT", "TTG", "CTT", "TCC", "ATG", "CAG", "GGT", "GCT", "GTA", "GAC", "ATA", "AAC", "AAG", "CTT", "TGT", "GAA", "GAA", "ATG", "CTG", "GAC", "AAC", "AGG", "GCA", "ACC", "TTA", "CAA"]
1541 ],
1542 "nonsynonymous substitution count": [
1543 [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
1544 ],
1545 "original name":"epi_isl_1181694/hCoV-19/USA/DE-DHSS-B1064373/2021",
1546 "synonymous substitution count": [
1547 [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
1548 ]
1549 },
1550 "epi_isl_1409773_hCoV_19_England_CAMC_141DB08_2021":{
1551 "Global MG94xREV":0,
1552 "Nucleotide GTR":0,
1553 "amino-acid": [
1554 ["S", "K", "M", "S", "D", "V", "K", "C", "T", "S", "V", "V", "L", "L", "S", "V", "L", "Q", "Q", "L", "R", "V", "E", "S", "S", "S", "K", "L", "W", "A", "Q", "C", "V", "Q", "L", "H", "N", "D", "I", "L", "L", "A", "K", "D", "T", "T", "E", "A", "F", "E", "K", "M", "V", "S", "L", "L", "S", "V", "L", "L", "S", "M", "Q", "G", "A", "V", "D", "I", "N", "K", "L", "C", "E", "E", "I", "L", "D", "N", "R", "A", "T", "L", "Q"]
1555 ],
1556 "codon": [
1557 ["TCT", "AAA", "ATG", "TCA", "GAT", "GTA", "AAG", "TGC", "ACA", "TCA", "GTA", "GTC", "TTA", "CTC", "TCA", "GTT", "TTG", "CAA", "CAA", "CTC", "AGA", "GTA", "GAA", "TCA", "TCA", "TCT", "AAA", "TTG", "TGG", "GCT", "CAA", "TGT", "GTC", "CAG", "TTA", "CAC", "AAT", "GAC", "ATT", "CTC", "TTA", "GCT", "AAA", "GAT", "ACT", "ACT", "GAA", "GCC", "TTT", "GAA", "AAA", "ATG", "GTT", "TCA", "CTA", "CTT", "TCT", "GTT", "TTG", "CTT", "TCC", "ATG", "CAG", "GGT", "GCT", "GTA", "GAC", "ATA", "AAC", "AAG", "CTT", "TGT", "GAA", "GAA", "ATT", "CTG", "GAC", "AAC", "AGG", "GCA", "ACC", "TTA", "CAA"]
1558 ],
1559 "nonsynonymous substitution count": [
1560 [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
1561 ],
1562 "original name":"epi_isl_1409773/hCoV-19/England/CAMC-141DB08/2021",
1563 "synonymous substitution count": [
1564 [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
1565 ]
1566 },
1567 "epi_isl_1415264_hCoV_19_India_MH_NCCS_128864_2021":{
1568 "Global MG94xREV":0,
1569 "Nucleotide GTR":0,
1570 "amino-acid": [
1571 ["S", "K", "M", "S", "D", "V", "K", "C", "T", "S", "V", "V", "L", "L", "S", "V", "L", "Q", "Q", "L", "R", "V", "E", "S", "S", "S", "K", "L", "W", "A", "Q", "C", "V", "Q", "L", "H", "N", "D", "I", "L", "L", "A", "K", "D", "T", "T", "E", "A", "F", "E", "K", "M", "V", "S", "L", "L", "S", "V", "L", "L", "S", "M", "Q", "G", "A", "V", "D", "I", "N", "K", "F", "C", "E", "E", "M", "L", "D", "N", "R", "A", "T", "L", "Q"]
1572 ],
1573 "codon": [
1574 ["TCT", "AAA", "ATG", "TCA", "GAT", "GTA", "AAG", "TGC", "ACA", "TCA", "GTA", "GTC", "TTA", "CTC", "TCA", "GTT", "TTG", "CAA", "CAA", "CTC", "AGA", "GTA", "GAA", "TCA", "TCA", "TCT", "AAA", "TTG", "TGG", "GCT", "CAA", "TGT", "GTC", "CAG", "TTA", "CAC", "AAT", "GAC", "ATT", "CTC", "TTA", "GCT", "AAA", "GAT", "ACT", "ACT", "GAA", "GCC", "TTT", "GAA", "AAA", "ATG", "GTT", "TCA", "CTA", "CTT", "TCT", "GTT", "TTG", "CTT", "TCC", "ATG", "CAG", "GGT", "GCT", "GTA", "GAC", "ATA", "AAC", "AAG", "TTT", "TGT", "GAA", "GAA", "ATG", "CTG", "GAC", "AAC", "AGG", "GCA", "ACC", "TTA", "CAA"]
1575 ],
1576 "nonsynonymous substitution count": [
1577 [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
1578 ],
1579 "original name":"epi_isl_1415264/hCoV-19/India/MH-NCCS-128864/2021",
1580 "synonymous substitution count": [
1581 [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
1582 ]
1583 },
1584 "epi_isl_1415273_hCoV_19_India_MH_NCCS_87216_2021":{
1585 "Global MG94xREV":0.00413987136382643,
1586 "Nucleotide GTR":0.004030278899480038,
1587 "amino-acid": [
1588 ["S", "K", "M", "S", "D", "V", "K", "C", "T", "S", "V", "V", "L", "L", "S", "V", "L", "Q", "Q", "L", "R", "V", "E", "S", "S", "S", "K", "L", "W", "A", "Q", "C", "V", "Q", "L", "H", "N", "D", "I", "L", "L", "A", "K", "D", "T", "T", "E", "A", "F", "E", "K", "M", "V", "S", "L", "L", "S", "V", "L", "L", "S", "M", "Q", "G", "A", "V", "D", "I", "N", "K", "L", "C", "E", "E", "M", "L", "D", "N", "R", "A", "T", "L", "Q"]
1589 ],
1590 "codon": [
1591 ["TCT", "AAA", "ATG", "TCA", "GAT", "GTA", "AAG", "TGC", "ACA", "TCA", "GTA", "GTC", "TTA", "CTC", "TCA", "GTT", "TTG", "CAA", "CAA", "CTC", "AGA", "GTA", "GAA", "TCA", "TCA", "TCT", "AAA", "TTG", "TGG", "GCT", "CAA", "TGT", "GTC", "CAG", "TTA", "CAC", "AAT", "GAC", "ATT", "CTC", "TTA", "GCT", "AAA", "GAT", "ACT", "ACT", "GAA", "GCC", "TTT", "GAA", "AAA", "ATG", "GTT", "TCA", "CTA", "CTT", "TCT", "GTT", "TTG", "CTT", "TCC", "ATG", "CAG", "GGT", "GCT", "GTA", "GAC", "ATA", "AAT", "AAG", "CTT", "TGT", "GAA", "GAA", "ATG", "CTG", "GAC", "AAC", "AGG", "GCA", "ACC", "TTA", "CAA"]
1592 ],
1593 "nonsynonymous substitution count": [
1594 [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
1595 ],
1596 "original name":"epi_isl_1415273/hCoV-19/India/MH-NCCS-87216/2021",
1597 "synonymous substitution count": [
1598 [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
1599 ]
1600 },
1601 "epi_isl_1416968_hCoV_19_Guadeloupe_IPP06229_2021":{
1602 "Global MG94xREV":0.00413734151262962,
1603 "Nucleotide GTR":0.004027816019597722,
1604 "amino-acid": [
1605 ["S", "K", "M", "S", "D", "V", "K", "C", "T", "S", "V", "V", "L", "L", "S", "V", "L", "Q", "Q", "L", "R", "V", "E", "S", "S", "S", "K", "L", "W", "A", "Q", "C", "V", "Q", "L", "H", "N", "D", "I", "L", "L", "A", "K", "D", "T", "T", "E", "A", "F", "E", "K", "M", "V", "S", "L", "L", "S", "V", "L", "L", "S", "M", "Q", "G", "A", "V", "D", "I", "N", "K", "L", "C", "E", "E", "M", "L", "D", "N", "R", "A", "T", "L", "Q"]
1606 ],
1607 "codon": [
1608 ["TCT", "AAA", "ATG", "TCA", "GAT", "GTA", "AAG", "TGC", "ACA", "TCA", "GTA", "GTC", "TTA", "CTC", "TCA", "GTT", "TTG", "CAA", "CAA", "CTC", "AGA", "GTA", "GAA", "TCA", "TCA", "TCT", "AAA", "TTG", "TGG", "GCT", "CAA", "TGT", "GTC", "CAG", "TTA", "CAC", "AAT", "GAC", "ATT", "CTC", "TTA", "GCT", "AAA", "GAT", "ACT", "ACT", "GAA", "GCC", "TTT", "GAA", "AAA", "ATG", "GTT", "TCA", "CTA", "CTT", "TCT", "GTT", "TTG", "CTT", "TCC", "ATG", "CAG", "GGT", "GCT", "GTA", "GAT", "ATA", "AAC", "AAG", "CTT", "TGT", "GAA", "GAA", "ATG", "CTG", "GAC", "AAC", "AGG", "GCA", "ACC", "TTA", "CAA"]
1609 ],
1610 "nonsynonymous substitution count": [
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1612 ],
1613 "original name":"epi_isl_1416968/hCoV-19/Guadeloupe/IPP06229/2021",
1614 "synonymous substitution count": [
1615 [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
1616 ]
1617 },
1618 "epi_isl_1564187_hCoV_19_England_CAMC_14D5BFD_2021":{
1619 "Global MG94xREV":0,
1620 "Nucleotide GTR":0,
1621 "amino-acid": [
1622 ["S", "K", "M", "S", "D", "V", "K", "C", "T", "S", "V", "V", "L", "L", "S", "V", "L", "Q", "Q", "L", "R", "V", "E", "S", "S", "S", "K", "L", "W", "A", "Q", "C", "V", "Q", "L", "H", "N", "D", "I", "L", "L", "A", "K", "D", "T", "T", "E", "A", "F", "E", "K", "M", "V", "S", "L", "L", "S", "V", "L", "L", "S", "M", "Q", "G", "A", "V", "D", "I", "N", "K", "L", "C", "E", "E", "M", "L", "D", "N", "R", "A", "T", "L", "Q"]
1623 ],
1624 "codon": [
1625 ["TCT", "AAA", "ATG", "TCA", "GAT", "GTA", "AAG", "TGC", "ACA", "TCA", "GTA", "GTC", "TTA", "CTC", "TCA", "GTT", "TTG", "CAA", "CAA", "CTC", "AGA", "GTA", "GAA", "TCA", "TCA", "TCT", "AAA", "TTG", "TGG", "GCT", "CAA", "TGT", "GTC", "CAG", "TTA", "CAC", "AAT", "GAC", "ATT", "CTC", "TTA", "GCT", "AAA", "GAT", "ACT", "ACT", "GAA", "GCC", "TTT", "GAA", "AAA", "ATG", "GTT", "TCA", "CTA", "CTT", "TCT", "GTT", "TTG", "CTT", "TCT", "ATG", "CAG", "GGT", "GCT", "GTA", "GAC", "ATA", "AAC", "AAG", "CTT", "TGT", "GAA", "GAA", "ATG", "CTG", "GAC", "AAC", "AGG", "GCA", "ACC", "TTA", "CAA"]
1626 ],
1627 "nonsynonymous substitution count": [
1628 [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
1629 ],
1630 "original name":"epi_isl_1564187/hCoV-19/England/CAMC-14D5BFD/2021",
1631 "synonymous substitution count": [
1632 [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
1633 ]
1634 },
1635 "epi_isl_1583966_hCoV_19_England_CAMC_14D1B4C_2021":{
1636 "Global MG94xREV":0.004140528599929408,
1637 "Nucleotide GTR":0.004030918736944789,
1638 "amino-acid": [
1639 ["S", "K", "M", "S", "D", "V", "K", "C", "T", "S", "V", "V", "L", "L", "S", "V", "L", "Q", "Q", "L", "R", "V", "E", "S", "S", "F", "K", "L", "W", "A", "Q", "C", "V", "Q", "L", "H", "N", "D", "I", "L", "L", "A", "K", "D", "T", "T", "E", "A", "F", "E", "K", "M", "V", "S", "L", "L", "S", "V", "L", "L", "S", "M", "Q", "G", "A", "V", "D", "I", "N", "K", "L", "C", "E", "E", "M", "L", "D", "N", "R", "A", "T", "L", "Q"]
1640 ],
1641 "codon": [
1642 ["TCT", "AAA", "ATG", "TCA", "GAT", "GTA", "AAG", "TGC", "ACA", "TCA", "GTA", "GTC", "TTA", "CTC", "TCA", "GTT", "TTG", "CAA", "CAA", "CTC", "AGA", "GTA", "GAA", "TCA", "TCA", "TTT", "AAA", "TTG", "TGG", "GCT", "CAA", "TGT", "GTC", "CAG", "TTA", "CAC", "AAT", "GAC", "ATT", "CTC", "TTA", "GCT", "AAA", "GAT", "ACT", "ACT", "GAA", "GCC", "TTT", "GAA", "AAA", "ATG", "GTT", "TCA", "CTA", "CTT", "TCT", "GTT", "TTG", "CTT", "TCC", "ATG", "CAG", "GGT", "GCT", "GTA", "GAC", "ATA", "AAC", "AAG", "CTT", "TGT", "GAA", "GAA", "ATG", "CTG", "GAC", "AAC", "AGG", "GCA", "ACC", "TTA", "CAA"]
1643 ],
1644 "nonsynonymous substitution count": [
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1646 ],
1647 "original name":"epi_isl_1583966/hCoV-19/England/CAMC-14D1B4C/2021",
1648 "synonymous substitution count": [
1649 [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
1650 ]
1651 },
1652 "epi_isl_1635400_hCoV_19_Scotland_CAMC_14DEDB2_2021":{
1653 "Global MG94xREV":0,
1654 "Nucleotide GTR":0,
1655 "amino-acid": [
1656 ["S", "K", "M", "S", "D", "V", "K", "C", "T", "S", "V", "V", "L", "L", "S", "V", "L", "Q", "Q", "L", "R", "V", "E", "S", "S", "S", "K", "L", "W", "A", "Q", "C", "V", "Q", "L", "H", "N", "D", "I", "L", "L", "A", "K", "D", "T", "T", "E", "A", "F", "E", "K", "M", "V", "S", "L", "L", "S", "V", "L", "L", "S", "M", "Q", "G", "A", "V", "D", "I", "N", "K", "L", "C", "E", "E", "M", "L", "D", "N", "R", "A", "T", "L", "Q"]
1657 ],
1658 "codon": [
1659 ["TCT", "AAA", "ATG", "TCA", "GAT", "GTA", "AAG", "TGC", "ACA", "TCA", "GTA", "GTC", "TTA", "CTC", "TCA", "GTT", "TTG", "CAA", "CAA", "CTC", "AGA", "GTA", "GAA", "TCA", "TCA", "TCT", "AAA", "TTG", "TGG", "GCT", "CAA", "TGC", "GTC", "CAG", "TTA", "CAC", "AAT", "GAC", "ATT", "CTC", "TTA", "GCT", "AAA", "GAT", "ACT", "ACT", "GAA", "GCC", "TTT", "GAA", "AAA", "ATG", "GTT", "TCA", "CTA", "CTT", "TCT", "GTT", "TTG", "CTT", "TCC", "ATG", "CAG", "GGT", "GCT", "GTA", "GAC", "ATA", "AAC", "AAG", "CTT", "TGT", "GAA", "GAA", "ATG", "CTG", "GAC", "AAC", "AGG", "GCA", "ACC", "TTA", "CAA"]
1660 ],
1661 "nonsynonymous substitution count": [
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1663 ],
1664 "original name":"epi_isl_1635400/hCoV-19/Scotland/CAMC-14DEDB2/2021",
1665 "synonymous substitution count": [
1666 [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
1667 ]
1668 },
1669 "epi_isl_1641831_hCoV_19_Germany_BY_RKI_I_076082_2021":{
1670 "Global MG94xREV":0.004129734870461834,
1671 "Nucleotide GTR":0.004020410743749638,
1672 "amino-acid": [
1673 ["S", "K", "M", "S", "D", "V", "K", "C", "T", "S", "V", "V", "L", "L", "S", "V", "L", "Q", "Q", "L", "R", "V", "E", "S", "S", "S", "K", "L", "W", "A", "Q", "C", "V", "Q", "L", "H", "N", "D", "I", "L", "L", "A", "K", "D", "T", "T", "E", "A", "F", "E", "K", "M", "V", "S", "L", "L", "S", "V", "L", "L", "S", "M", "Q", "G", "A", "V", "D", "I", "N", "K", "L", "C", "E", "D", "M", "L", "D", "N", "R", "A", "T", "L", "Q"]
1674 ],
1675 "codon": [
1676 ["TCT", "AAA", "ATG", "TCA", "GAT", "GTA", "AAG", "TGC", "ACA", "TCA", "GTA", "GTC", "TTA", "CTC", "TCA", "GTT", "TTG", "CAA", "CAA", "CTC", "AGA", "GTA", "GAA", "TCA", "TCA", "TCT", "AAA", "TTG", "TGG", "GCT", "CAA", "TGT", "GTC", "CAG", "TTA", "CAC", "AAT", "GAC", "ATT", "CTC", "TTA", "GCT", "AAA", "GAT", "ACT", "ACT", "GAA", "GCC", "TTT", "GAA", "AAA", "ATG", "GTT", "TCA", "CTA", "CTT", "TCT", "GTT", "TTG", "CTT", "TCC", "ATG", "CAG", "GGT", "GCT", "GTA", "GAC", "ATA", "AAC", "AAG", "CTT", "TGT", "GAA", "GAC", "ATG", "CTG", "GAC", "AAC", "AGG", "GCA", "ACC", "TTA", "CAA"]
1677 ],
1678 "nonsynonymous substitution count": [
1679 [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0]
1680 ],
1681 "original name":"epi_isl_1641831/hCoV-19/Germany/BY-RKI-I-076082/2021",
1682 "synonymous substitution count": [
1683 [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
1684 ]
1685 },
1686 "epi_isl_1648157_hCoV_19_USA_CA_CDC_QDX23571833_2021":{
1687 "Global MG94xREV":0.004144895440883205,
1688 "Nucleotide GTR":0.004035169976997134,
1689 "amino-acid": [
1690 ["S", "K", "M", "S", "D", "V", "K", "C", "T", "S", "V", "V", "L", "L", "S", "V", "L", "Q", "Q", "L", "R", "V", "E", "S", "S", "S", "K", "L", "W", "A", "Q", "C", "V", "Q", "L", "H", "N", "D", "I", "L", "L", "A", "K", "D", "T", "T", "E", "A", "F", "E", "K", "M", "V", "S", "L", "L", "S", "V", "L", "L", "S", "M", "Q", "G", "A", "V", "D", "I", "N", "K", "L", "C", "E", "E", "M", "L", "D", "N", "R", "A", "I", "L", "Q"]
1691 ],
1692 "codon": [
1693 ["TCT", "AAA", "ATG", "TCA", "GAT", "GTA", "AAG", "TGC", "ACA", "TCA", "GTA", "GTC", "TTA", "CTC", "TCA", "GTT", "TTG", "CAA", "CAA", "CTC", "AGA", "GTA", "GAA", "TCA", "TCA", "TCT", "AAA", "TTG", "TGG", "GCT", "CAA", "TGT", "GTC", "CAG", "TTA", "CAC", "AAT", "GAC", "ATT", "CTT", "TTA", "GCT", "AAA", "GAT", "ACT", "ACT", "GAA", "GCC", "TTT", "GAA", "AAA", "ATG", "GTT", "TCA", "CTA", "CTT", "TCT", "GTT", "TTG", "CTT", "TCC", "ATG", "CAG", "GGT", "GCT", "GTA", "GAC", "ATA", "AAC", "AAG", "CTT", "TGT", "GAA", "GAA", "ATG", "CTG", "GAC", "AAC", "AGG", "GCA", "ATC", "TTA", "CAA"]
1694 ],
1695 "nonsynonymous substitution count": [
1696 [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
1697 ],
1698 "original name":"epi_isl_1648157/hCoV-19/USA/CA-CDC-QDX23571833/2021",
1699 "synonymous substitution count": [
1700 [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
1701 ]
1702 },
1703 "epi_isl_1652109_hCoV_19_Singapore_565_2021":{
1704 "Global MG94xREV":0.004131163404666352,
1705 "Nucleotide GTR":0.004021801461179163,
1706 "amino-acid": [
1707 ["S", "K", "M", "S", "D", "V", "K", "C", "T", "S", "V", "V", "L", "L", "S", "V", "L", "Q", "Q", "L", "R", "V", "E", "S", "S", "S", "K", "L", "W", "A", "Q", "C", "V", "Q", "L", "H", "N", "D", "I", "L", "L", "A", "K", "D", "T", "T", "E", "A", "F", "E", "K", "M", "V", "S", "L", "L", "S", "V", "L", "L", "S", "M", "Q", "G", "A", "V", "D", "I", "N", "K", "L", "C", "E", "E", "V", "L", "D", "N", "R", "A", "T", "L", "Q"]
1708 ],
1709 "codon": [
1710 ["TCT", "AAA", "ATG", "TCA", "GAT", "GTA", "AAG", "TGC", "ACA", "TCA", "GTA", "GTC", "TTA", "CTC", "TCA", "GTT", "TTG", "CAA", "CAA", "CTC", "AGA", "GTA", "GAA", "TCA", "TCA", "TCT", "AAA", "TTG", "TGG", "GCT", "CAA", "TGT", "GTC", "CAG", "TTA", "CAC", "AAT", "GAC", "ATT", "CTC", "TTA", "GCT", "AAA", "GAT", "ACT", "ACT", "GAA", "GCC", "TTT", "GAA", "AAA", "ATG", "GTT", "TCA", "CTA", "CTT", "TCT", "GTT", "TTG", "CTT", "TCC", "ATG", "CAG", "GGT", "GCT", "GTA", "GAC", "ATA", "AAC", "AAG", "CTT", "TGT", "GAA", "GAA", "GTG", "CTG", "GAC", "AAC", "AGG", "GCA", "ACC", "TTA", "CAA"]
1711 ],
1712 "nonsynonymous substitution count": [
1713 [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0]
1714 ],
1715 "original name":"epi_isl_1652109/hCoV-19/Singapore/565/2021",
1716 "synonymous substitution count": [
1717 [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
1718 ]
1719 },
1720 "gb_MT226610_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_CHN_KMS1_2020_Segment_null_Host_Human":{
1721 "Global MG94xREV":0.004383347170948128,
1722 "Nucleotide GTR":0.004267309309784737,
1723 "amino-acid": [
1724 ["S", "K", "M", "S", "D", "V", "K", "C", "T", "S", "V", "V", "L", "L", "S", "V", "L", "Q", "Q", "L", "R", "V", "E", "S", "S", "S", "K", "L", "W", "A", "Q", "C", "V", "Q", "L", "H", "N", "D", "I", "L", "L", "A", "K", "D", "T", "T", "E", "A", "F", "E", "K", "M", "V", "S", "L", "L", "S", "V", "L", "L", "S", "M", "Q", "G", "A", "V", "H", "I", "N", "K", "L", "C", "E", "E", "M", "L", "D", "N", "R", "A", "T", "L", "Q"]
1725 ],
1726 "codon": [
1727 ["TCT", "AAA", "ATG", "TCA", "GAT", "GTA", "AAG", "TGC", "ACA", "TCA", "GTA", "GTC", "TTA", "CTC", "TCA", "GTT", "TTG", "CAA", "CAA", "CTC", "AGA", "GTA", "GAA", "TCA", "TCA", "TCT", "AAA", "TTG", "TGG", "GCT", "CAA", "TGT", "GTC", "CAG", "TTA", "CAC", "AAT", "GAC", "ATT", "CTC", "TTA", "GCT", "AAA", "GAT", "ACT", "ACT", "GAA", "GCC", "TTT", "GAA", "AAA", "ATG", "GTT", "TCA", "CTA", "CTT", "TCT", "GTT", "TTG", "CTT", "TCC", "ATG", "CAG", "GGT", "GCT", "GTA", "CAC", "ATA", "AAC", "AAG", "CTT", "TGT", "GAA", "GAA", "ATG", "CTG", "GAC", "AAC", "AGG", "GCA", "ACC", "TTA", "CAA"]
1728 ],
1729 "nonsynonymous substitution count": [
1730 [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
1731 ],
1732 "original name":"gb_MT226610_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_CHN_KMS1_2020_Segment_null_Host_Human",
1733 "synonymous substitution count": [
1734 [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
1735 ]
1736 },
1737 "gb_MT291831_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_CHN_Beijing_IME_BJ01_2020_Segment_null_Host_Human":{
1738 "Global MG94xREV":0.004140526003645435,
1739 "Nucleotide GTR":0.004030916209390761,
1740 "amino-acid": [
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1820 ]
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1825 "amino-acid": [
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1837 ]
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1841 "Nucleotide GTR":0.004027695612427458,
1842 "amino-acid": [
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1852 "synonymous substitution count": [
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1854 ]
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1856 "gb_MT460125_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_CA_CZB_1105_2020_Segment_null_Host_Human":{
1857 "Global MG94xREV":0.004131414720512286,
1858 "Nucleotide GTR":0.004022046124083386,
1859 "amino-acid": [
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1973 ]
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1983 ],
1984 "nonsynonymous substitution count": [
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1986 ],
1987 "original name":"gb_MT628119_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_CA_CZB_1404_2020_Segment_null_Host_Human",
1988 "synonymous substitution count": [
1989 [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
1990 ]
1991 },
1992 "gb_MT628199_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_CA_CZB_1525_2020_Segment_null_Host_Human":{
1993 "Global MG94xREV":0.00413387672462659,
1994 "Nucleotide GTR":0.004024442952960482,
1995 "amino-acid": [
1996 ["S", "K", "M", "S", "D", "V", "K", "C", "T", "S", "V", "V", "L", "L", "S", "V", "F", "Q", "Q", "L", "G", "V", "E", "S", "S", "S", "K", "L", "W", "A", "Q", "C", "V", "Q", "L", "H", "N", "D", "I", "L", "L", "A", "K", "D", "T", "T", "E", "A", "F", "E", "K", "M", "V", "S", "L", "L", "S", "V", "L", "L", "S", "M", "Q", "G", "A", "V", "D", "I", "N", "K", "L", "C", "E", "E", "M", "L", "D", "N", "R", "A", "T", "L", "Q"]
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1998 "codon": [
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2000 ],
2001 "nonsynonymous substitution count": [
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2003 ],
2004 "original name":"gb_MT628199_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_CA_CZB_1525_2020_Segment_null_Host_Human",
2005 "synonymous substitution count": [
2006 [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
2007 ]
2008 },
2009 "gb_MT642069_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_WA_S1116_2020_Segment_null_Host_Human":{
2010 "Global MG94xREV":0.004130964400772737,
2011 "Nucleotide GTR":0.004021607725402646,
2012 "amino-acid": [
2013 ["S", "K", "M", "S", "D", "V", "K", "C", "T", "S", "V", "V", "L", "L", "S", "V", "L", "Q", "Q", "L", "R", "V", "E", "S", "S", "S", "K", "L", "W", "A", "Q", "C", "V", "Q", "L", "H", "N", "D", "I", "L", "L", "A", "K", "D", "T", "T", "E", "A", "L", "E", "K", "M", "V", "S", "L", "L", "S", "V", "L", "L", "S", "M", "Q", "G", "A", "V", "D", "I", "N", "K", "L", "C", "E", "E", "M", "L", "D", "N", "R", "A", "T", "L", "Q"]
2014 ],
2015 "codon": [
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2017 ],
2018 "nonsynonymous substitution count": [
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2020 ],
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2022 "synonymous substitution count": [
2023 [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
2024 ]
2025 },
2026 "gb_MT704128_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_MD_MDH_0028_2020_Segment_null_Host_Human":{
2027 "Global MG94xREV":0.004135274065278229,
2028 "Nucleotide GTR":0.004025803302606343,
2029 "amino-acid": [
2030 ["S", "K", "M", "S", "D", "V", "K", "C", "T", "S", "V", "V", "L", "L", "S", "V", "L", "Q", "Q", "L", "R", "V", "E", "S", "S", "S", "K", "L", "W", "A", "Q", "C", "V", "Q", "L", "H", "N", "D", "I", "L", "L", "A", "K", "D", "T", "T", "E", "A", "F", "E", "K", "M", "V", "A", "L", "L", "S", "V", "L", "L", "S", "M", "Q", "G", "A", "V", "D", "I", "N", "K", "L", "C", "E", "E", "M", "L", "D", "N", "R", "A", "T", "L", "Q"]
2031 ],
2032 "codon": [
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2034 ],
2035 "nonsynonymous substitution count": [
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2037 ],
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2039 "synonymous substitution count": [
2040 [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
2041 ]
2042 },
2043 "gb_MT731735_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_BGD_BCSIR_NILMRC_137_2020_Segment_null_Host_Human":{
2044 "Global MG94xREV":0.004129995051828744,
2045 "Nucleotide GTR":0.004020664037482934,
2046 "amino-acid": [
2047 ["S", "K", "M", "S", "D", "V", "K", "C", "T", "S", "V", "V", "L", "L", "S", "V", "L", "Q", "Q", "L", "R", "V", "E", "S", "S", "S", "K", "L", "W", "A", "Q", "C", "V", "Q", "L", "H", "N", "D", "I", "L", "L", "A", "K", "D", "T", "T", "E", "A", "F", "E", "K", "M", "V", "S", "L", "L", "S", "V", "L", "L", "S", "M", "Q", "G", "A", "V", "D", "I", "N", "K", "L", "C", "E", "E", "M", "L", "D", "N", "R", "A", "T", "L", "Q"]
2048 ],
2049 "codon": [
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2051 ],
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2054 ],
2055 "original name":"gb_MT731735_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_BGD_BCSIR_NILMRC_137_2020_Segment_null_Host_Human",
2056 "synonymous substitution count": [
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2058 ]
2059 },
2060 "gb_MT755838_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_BGD_BCSIR_NILMRC_245_2020_Segment_null_Host_Human":{
2061 "Global MG94xREV":0.004128878985071015,
2062 "Nucleotide GTR":0.004019577515726879,
2063 "amino-acid": [
2064 ["S", "K", "M", "S", "D", "V", "K", "C", "T", "S", "V", "V", "L", "L", "S", "V", "L", "Q", "Q", "L", "R", "V", "E", "S", "S", "S", "K", "L", "W", "A", "Q", "C", "V", "Q", "L", "H", "N", "D", "I", "L", "L", "A", "K", "D", "T", "T", "E", "A", "F", "E", "K", "M", "V", "S", "L", "L", "S", "V", "L", "L", "S", "M", "Q", "G", "A", "V", "D", "I", "N", "K", "L", "C", "E", "E", "M", "L", "D", "N", "R", "A", "A", "L", "Q"]
2065 ],
2066 "codon": [
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2068 ],
2069 "nonsynonymous substitution count": [
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2071 ],
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2073 "synonymous substitution count": [
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2075 ]
2076 },
2077 "gb_MT786817_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_IN_QDX_182_2020_Segment_null_Host_Human":{
2078 "Global MG94xREV":0.00414751495060976,
2079 "Nucleotide GTR":0.00403772014192983,
2080 "amino-acid": [
2081 ["S", "K", "M", "S", "D", "V", "K", "C", "T", "S", "V", "V", "L", "L", "S", "V", "L", "Q", "Q", "L", "R", "V", "E", "S", "L", "S", "K", "L", "W", "A", "Q", "C", "V", "Q", "L", "H", "N", "D", "I", "L", "L", "A", "K", "D", "T", "T", "E", "A", "F", "E", "K", "M", "V", "S", "L", "L", "S", "V", "L", "L", "S", "M", "Q", "G", "A", "V", "D", "I", "N", "K", "L", "C", "E", "E", "M", "L", "D", "N", "R", "A", "T", "L", "Q"]
2082 ],
2083 "codon": [
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2085 ],
2086 "nonsynonymous substitution count": [
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2088 ],
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2090 "synonymous substitution count": [
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2092 ]
2093 },
2094 "gb_MT810119_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_KOR_CNUHV03_CA22_2020_Segment_null_Host_Human":{
2095 "Global MG94xREV":0.004128324697072589,
2096 "Nucleotide GTR":0.004019037901079946,
2097 "amino-acid": [
2098 ["S", "K", "M", "S", "D", "V", "K", "C", "T", "S", "V", "V", "L", "L", "S", "V", "L", "Q", "Q", "L", "R", "V", "E", "S", "S", "S", "K", "L", "W", "A", "Q", "C", "V", "Q", "L", "H", "N", "D", "I", "L", "L", "A", "K", "D", "T", "T", "E", "A", "F", "E", "K", "M", "V", "S", "L", "L", "S", "V", "L", "L", "S", "M", "Q", "G", "A", "V", "A", "I", "N", "K", "L", "C", "E", "E", "M", "L", "D", "N", "R", "A", "T", "L", "Q"]
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2100 "codon": [
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2143 ]
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2177 ]
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2194 ]
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2211 ]
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2213 "gb_MT856455_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_BGD_BCSIR_NILMRC_306_2020_Segment_null_Host_Human":{
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2216 "amino-acid": [
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2249 "Nucleotide GTR":0,
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2313 ]
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2315 "gb_MT937823_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_MD_MDH_0160_2020_Segment_null_Host_Human":{
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2317 "Nucleotide GTR":0.004032648165585153,
2318 "amino-acid": [
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2330 ]
2331 },
2332 "gb_MT940476_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_IND_GBRC336_2020_Segment_null_Host_Human":{
2333 "Global MG94xREV":0.004129305312742796,
2334 "Nucleotide GTR":0.004019992557468228,
2335 "amino-acid": [
2336 ["S", "K", "M", "S", "D", "V", "K", "C", "T", "S", "V", "V", "L", "L", "S", "V", "L", "Q", "Q", "L", "R", "V", "E", "S", "S", "S", "K", "L", "W", "A", "Q", "C", "V", "Q", "L", "H", "N", "D", "I", "L", "L", "A", "K", "D", "T", "T", "E", "A", "F", "E", "K", "M", "V", "S", "L", "L", "S", "V", "L", "L", "S", "M", "Q", "G", "A", "V", "D", "I", "N", "K", "L", "C", "E", "E", "M", "L", "D", "N", "R", "A", "T", "L", "Q"]
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2432 ]
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2437 "amino-acid": [
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2449 ]
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2451 "gb_MT981432_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_COVID20_0585_2020_Segment_null_Host_Human":{
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2453 "Nucleotide GTR":0.00403772014192983,
2454 "amino-acid": [
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2568 ]
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2573 "amino-acid": [
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2655 "gb_MW067706_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_VA_DCLS_1288_2020_Segment_null_Host_Human":{
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2658 "amino-acid": [
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2670 ]
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2672 "gb_MW067772_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_VA_DCLS_1293_2020_Segment_null_Host_Human":{
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2675 "amino-acid": [
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2687 ]
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2689 "gb_MW067820_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_COVID20_1113_2020_Segment_null_Host_Human":{
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2691 "Nucleotide GTR":0.004011539898857469,
2692 "amino-acid": [
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2755 ]
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2789 ]
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2811 "amino-acid": [
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2908 ]
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2913 "amino-acid": [
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2925 ]
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2927 "gb_MW276413_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_CA_CZB_10909_2020_Segment_null_Host_Human":{
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2929 "Nucleotide GTR":0.004021982748240418,
2930 "amino-acid": [
2931 ["S", "K", "M", "S", "D", "V", "K", "C", "T", "S", "V", "V", "L", "L", "S", "V", "L", "Q", "Q", "L", "R", "V", "E", "S", "S", "S", "K", "L", "W", "A", "Q", "C", "V", "Q", "L", "H", "N", "D", "I", "L", "L", "A", "K", "D", "T", "T", "E", "A", "F", "E", "K", "M", "V", "S", "L", "L", "S", "V", "L", "L", "S", "M", "Q", "G", "A", "V", "D", "I", "N", "R", "L", "C", "E", "E", "M", "L", "D", "N", "R", "A", "T", "L", "Q"]
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2981 "amino-acid": [
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3010 ]
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3012 "gb_MW276661_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_CA_CZB_11859_2020_Segment_null_Host_Human":{
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3014 "Nucleotide GTR":0.004028491244612409,
3015 "amino-acid": [
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3027 ]
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3031 "Nucleotide GTR":0,
3032 "amino-acid": [
3033 ["S", "K", "M", "S", "D", "V", "K", "C", "T", "S", "V", "V", "L", "L", "S", "V", "L", "Q", "Q", "L", "R", "V", "E", "S", "S", "S", "K", "L", "W", "A", "Q", "C", "V", "Q", "L", "H", "N", "D", "I", "L", "L", "A", "K", "D", "T", "T", "E", "A", "F", "E", "K", "M", "V", "S", "L", "L", "S", "V", "L", "L", "S", "M", "Q", "G", "A", "V", "D", "I", "N", "K", "L", "C", "E", "E", "M", "L", "D", "N", "R", "A", "I", "L", "Q"]
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3035 "codon": [
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3042 "synonymous substitution count": [
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3044 ]
3045 },
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3047 "Global MG94xREV":0.004142305040013091,
3048 "Nucleotide GTR":0.004032648150338642,
3049 "amino-acid": [
3050 ["S", "K", "M", "S", "D", "V", "K", "C", "T", "S", "V", "V", "L", "L", "S", "V", "L", "Q", "Q", "L", "R", "V", "E", "S", "S", "S", "K", "L", "W", "D", "Q", "C", "V", "Q", "L", "H", "N", "D", "I", "L", "L", "A", "K", "D", "T", "T", "E", "A", "F", "E", "K", "M", "V", "S", "L", "L", "S", "V", "L", "L", "S", "M", "Q", "G", "A", "V", "D", "I", "N", "K", "L", "C", "E", "E", "M", "L", "D", "N", "R", "A", "T", "L", "Q"]
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3112 ]
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3114 "gb_MW281864_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_West_Bank_Jericho_SARS_CoV_2_2020_Segment_null_Host_Human":{
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3129 ]
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3131 "gb_MW306408_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_CA_CZB_12385_2020_Segment_null_Host_Human":{
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3134 "amino-acid": [
3135 ["S", "K", "M", "S", "D", "V", "K", "C", "T", "S", "V", "V", "L", "L", "S", "V", "L", "Q", "Q", "L", "R", "V", "E", "S", "S", "S", "K", "L", "W", "A", "Q", "C", "V", "Q", "L", "H", "N", "D", "I", "L", "L", "V", "K", "D", "T", "T", "E", "A", "F", "E", "K", "M", "V", "S", "L", "L", "S", "V", "L", "L", "S", "M", "Q", "G", "A", "V", "D", "I", "N", "K", "L", "C", "E", "E", "M", "L", "D", "N", "R", "A", "T", "L", "Q"]
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3146 ]
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3151 "amino-acid": [
3152 ["S", "K", "M", "S", "D", "V", "K", "C", "T", "S", "V", "V", "L", "L", "S", "V", "L", "Q", "Q", "L", "R", "V", "E", "S", "S", "S", "K", "L", "W", "A", "Q", "C", "V", "Q", "L", "H", "N", "D", "I", "L", "L", "A", "K", "D", "T", "T", "E", "A", "F", "E", "K", "M", "V", "S", "L", "L", "S", "V", "L", "L", "S", "M", "Q", "G", "A", "V", "D", "I", "N", "K", "L", "C", "E", "E", "M", "L", "D", "N", "R", "A", "T", "L", "Q"]
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3163 ]
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3166 "Global MG94xREV":0.004130313242590159,
3167 "Nucleotide GTR":0.00402097380496096,
3168 "amino-acid": [
3169 ["S", "K", "M", "S", "D", "V", "K", "C", "T", "S", "V", "V", "L", "L", "S", "V", "L", "Q", "Q", "L", "R", "V", "E", "S", "S", "S", "K", "L", "W", "A", "Q", "C", "V", "Q", "L", "H", "N", "D", "I", "L", "L", "A", "K", "D", "T", "T", "E", "A", "F", "E", "K", "M", "V", "S", "L", "L", "S", "V", "L", "L", "S", "M", "Q", "G", "A", "V", "D", "I", "N", "K", "L", "C", "E", "E", "M", "L", "D", "N", "R", "A", "T", "L", "Q"]
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3184 "Nucleotide GTR":0,
3185 "amino-acid": [
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3199 "gb_MW338802_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_VA_DCLS_2062_2020_Segment_null_Host_Human":{
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3202 "amino-acid": [
3203 ["S", "K", "M", "S", "D", "V", "K", "C", "T", "S", "V", "V", "L", "L", "S", "V", "L", "Q", "Q", "L", "R", "V", "E", "S", "L", "S", "K", "L", "W", "A", "Q", "C", "V", "Q", "L", "H", "N", "D", "I", "L", "L", "A", "K", "D", "T", "T", "E", "A", "F", "E", "K", "M", "V", "S", "L", "L", "S", "V", "L", "L", "S", "M", "Q", "G", "A", "V", "D", "I", "N", "K", "L", "C", "E", "E", "M", "L", "D", "N", "R", "A", "T", "L", "Q"]
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3214 ]
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3216 "gb_MW341806_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_IL_UW_1937_2020_Segment_null_Host_Human":{
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3218 "Nucleotide GTR":0.004036358361988931,
3219 "amino-acid": [
3220 ["S", "K", "M", "S", "D", "V", "K", "C", "T", "S", "V", "V", "L", "L", "S", "V", "L", "Q", "Q", "L", "R", "V", "E", "S", "S", "S", "K", "L", "W", "A", "Q", "C", "V", "Q", "L", "H", "N", "D", "I", "L", "L", "A", "K", "D", "T", "T", "E", "A", "F", "E", "K", "M", "V", "S", "L", "L", "S", "V", "L", "L", "S", "M", "Q", "G", "A", "V", "D", "I", "N", "K", "L", "C", "E", "E", "M", "L", "D", "N", "R", "A", "T", "L", "Q"]
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3229 "synonymous substitution count": [
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3231 ]
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3233 "gb_MW365025_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_CHL_Santiago_PUC_MVL_0397_2020_Segment_null_Host_Human":{
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3235 "Nucleotide GTR":0.004027811421136077,
3236 "amino-acid": [
3237 ["S", "K", "M", "S", "D", "V", "K", "C", "T", "S", "V", "V", "L", "L", "S", "V", "L", "Q", "Q", "L", "R", "V", "E", "S", "S", "S", "K", "L", "W", "A", "Q", "C", "V", "Q", "L", "H", "N", "D", "I", "L", "L", "A", "K", "D", "I", "T", "E", "A", "F", "E", "K", "M", "V", "S", "L", "L", "S", "V", "L", "L", "S", "M", "Q", "G", "A", "V", "D", "I", "N", "K", "L", "C", "E", "E", "M", "L", "D", "N", "R", "A", "T", "L", "Q"]
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3239 "codon": [
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3248 ]
3249 },
3250 "gb_MW403680_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_VA_DCLS_2414_2020_Segment_null_Host_Human":{
3251 "Global MG94xREV":0.004140564063776486,
3252 "Nucleotide GTR":0.004030953261977568,
3253 "amino-acid": [
3254 ["S", "K", "M", "S", "D", "V", "K", "C", "T", "S", "V", "V", "L", "L", "S", "V", "L", "Q", "Q", "L", "R", "V", "E", "S", "S", "S", "K", "L", "W", "T", "Q", "C", "V", "Q", "L", "H", "N", "D", "I", "L", "L", "A", "K", "D", "T", "T", "E", "A", "F", "E", "K", "M", "V", "S", "L", "L", "S", "V", "L", "L", "S", "M", "Q", "G", "A", "V", "D", "I", "N", "K", "L", "C", "E", "E", "M", "L", "D", "N", "R", "A", "T", "L", "Q"]
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3256 "codon": [
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3258 ],
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3263 "synonymous substitution count": [
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3265 ]
3266 },
3267 "gb_MW406516_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_AR_CDC_2_3693765_2020_Segment_null_Host_Human":{
3268 "Global MG94xREV":0.004133715723948402,
3269 "Nucleotide GTR":0.004024286214361844,
3270 "amino-acid": [
3271 ["S", "K", "M", "S", "D", "V", "K", "C", "T", "S", "V", "V", "L", "L", "S", "V", "L", "Q", "Q", "L", "R", "V", "E", "S", "S", "S", "K", "L", "W", "A", "Q", "C", "V", "Q", "L", "H", "N", "D", "I", "L", "L", "A", "K", "D", "T", "T", "E", "A", "F", "E", "K", "M", "V", "S", "L", "L", "S", "V", "L", "L", "S", "M", "Q", "G", "A", "V", "D", "I", "N", "K", "L", "C", "E", "E", "M", "L", "D", "N", "R", "A", "T", "L", "Q"]
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3273 "codon": [
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3275 ],
3276 "nonsynonymous substitution count": [
3277 [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
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3280 "synonymous substitution count": [
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3282 ]
3283 },
3284 "gb_MW406549_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_OK_CDC_2_3693789_2020_Segment_null_Host_Human":{
3285 "Global MG94xREV":0,
3286 "Nucleotide GTR":0,
3287 "amino-acid": [
3288 ["S", "K", "M", "S", "D", "V", "K", "C", "T", "S", "V", "V", "L", "L", "S", "V", "L", "Q", "Q", "L", "R", "V", "E", "S", "S", "S", "K", "L", "W", "A", "Q", "C", "C", "Q", "L", "H", "N", "D", "I", "L", "L", "A", "K", "D", "T", "T", "E", "A", "F", "E", "K", "M", "V", "S", "L", "L", "S", "V", "L", "L", "S", "M", "Q", "G", "A", "V", "D", "I", "N", "K", "L", "C", "E", "E", "M", "L", "D", "N", "R", "A", "I", "L", "Q"]
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3299 ]
3300 },
3301 "gb_MW406612_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_OK_CDC_2_3693466_2020_Segment_null_Host_Human":{
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3304 "amino-acid": [
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3316 ]
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3333 ]
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3335 "gb_MW420097_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_UT_UPHL_2012061461_2020_Segment_null_Host_Human":{
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3338 "amino-acid": [
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3350 ]
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3352 "gb_MW420606_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_UT_UPHL_2012663262_2020_Segment_null_Host_Human":{
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3354 "Nucleotide GTR":0.00403518969195818,
3355 "amino-acid": [
3356 ["S", "K", "M", "S", "D", "V", "K", "C", "T", "S", "V", "V", "L", "L", "S", "V", "L", "Q", "Q", "L", "R", "V", "E", "S", "S", "F", "K", "L", "W", "A", "Q", "C", "V", "Q", "L", "H", "N", "D", "I", "L", "L", "A", "K", "D", "T", "T", "E", "A", "F", "E", "K", "M", "V", "S", "L", "L", "S", "V", "L", "L", "S", "M", "Q", "G", "A", "V", "D", "I", "N", "K", "L", "C", "E", "E", "M", "L", "D", "N", "R", "A", "T", "L", "Q"]
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3367 ]
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3369 "gb_MW420777_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_UT_UPHL_2012868464_2020_Segment_null_Host_Human":{
3370 "Global MG94xREV":0.00412910826676859,
3371 "Nucleotide GTR":0.00401980072778023,
3372 "amino-acid": [
3373 ["S", "K", "M", "S", "D", "V", "K", "C", "T", "S", "V", "V", "L", "L", "S", "V", "L", "Q", "Q", "L", "R", "V", "E", "S", "S", "S", "K", "L", "W", "A", "Q", "C", "V", "Q", "L", "H", "N", "D", "I", "L", "L", "A", "K", "D", "T", "T", "E", "A", "F", "E", "K", "M", "V", "S", "L", "L", "S", "V", "L", "L", "S", "M", "Q", "G", "A", "V", "D", "I", "N", "K", "L", "C", "E", "E", "M", "L", "D", "N", "R", "A", "T", "L", "Q"]
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3384 ]
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3386 "gb_MW446829_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_MD_MDH_0493_2020_Segment_null_Host_Human":{
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3388 "Nucleotide GTR":0,
3389 "amino-acid": [
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3401 ]
3402 },
3403 "gb_MW449300_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_UT_UPHL_2012152791_2020_Segment_null_Host_Human":{
3404 "Global MG94xREV":0.004141726112508552,
3405 "Nucleotide GTR":0.00403208454845327,
3406 "amino-acid": [
3407 ["S", "K", "M", "S", "D", "V", "K", "C", "T", "S", "V", "V", "L", "L", "S", "V", "L", "Q", "Q", "L", "R", "V", "E", "S", "S", "S", "K", "L", "W", "A", "Q", "C", "V", "Q", "L", "H", "N", "D", "I", "L", "L", "A", "K", "D", "T", "T", "E", "A", "F", "E", "K", "M", "V", "S", "L", "L", "S", "V", "L", "L", "S", "M", "Q", "G", "A", "V", "D", "I", "N", "K", "L", "C", "E", "E", "I", "L", "D", "N", "R", "A", "T", "L", "Q"]
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3457 "amino-acid": [
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3486 ]
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3503 ]
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3508 "amino-acid": [
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3518 "synonymous substitution count": [
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3520 ]
3521 },
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3523 "Global MG94xREV":0.00415332728618899,
3524 "Nucleotide GTR":0.004043378610849028,
3525 "amino-acid": [
3526 ["S", "K", "M", "S", "D", "V", "K", "C", "T", "S", "V", "V", "L", "L", "S", "V", "L", "Q", "Q", "F", "R", "V", "E", "S", "S", "S", "K", "L", "W", "A", "Q", "C", "V", "Q", "L", "H", "N", "D", "I", "L", "L", "A", "K", "D", "T", "T", "E", "A", "F", "E", "K", "M", "V", "S", "L", "L", "S", "V", "L", "L", "S", "M", "Q", "G", "A", "V", "D", "I", "N", "K", "L", "C", "E", "E", "M", "L", "D", "N", "R", "A", "T", "L", "Q"]
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3590 "gb_MW483436_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_CA_CZB_12951_2020_Segment_null_Host_Human":{
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3593 "amino-acid": [
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3610 "amino-acid": [
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3627 "amino-acid": [
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3707 ]
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3709 "gb_MW495235_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_NH_QDX_3003_2021_Segment_null_Host_Human":{
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3712 "amino-acid": [
3713 ["S", "K", "M", "S", "D", "V", "K", "C", "T", "S", "V", "V", "L", "L", "S", "V", "L", "Q", "Q", "L", "R", "V", "E", "S", "S", "S", "K", "L", "W", "A", "Q", "C", "V", "Q", "L", "H", "N", "D", "I", "L", "L", "A", "K", "D", "T", "T", "E", "A", "F", "E", "K", "M", "V", "S", "L", "L", "S", "V", "L", "L", "S", "L", "Q", "G", "A", "V", "D", "I", "N", "K", "L", "C", "E", "E", "M", "L", "D", "N", "R", "A", "T", "L", "Q"]
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3724 ]
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3729 "amino-acid": [
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3739 "synonymous substitution count": [
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3741 ]
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3743 "gb_MW517337_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_SC_COVID21_0048_2021_Segment_null_Host_Human":{
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3745 "Nucleotide GTR":0.004035059596667426,
3746 "amino-acid": [
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3751 ],
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3756 "synonymous substitution count": [
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3758 ]
3759 },
3760 "gb_MW517339_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_SC_COVID21_0044_2021_Segment_null_Host_Human":{
3761 "Global MG94xREV":0.00413497429142954,
3762 "Nucleotide GTR":0.004025511464500564,
3763 "amino-acid": [
3764 ["S", "K", "M", "S", "D", "V", "K", "C", "T", "S", "V", "V", "L", "L", "S", "V", "L", "Q", "Q", "L", "R", "V", "E", "S", "S", "S", "K", "L", "W", "A", "Q", "C", "V", "Q", "L", "H", "N", "D", "I", "L", "L", "A", "K", "D", "T", "T", "E", "A", "F", "E", "K", "M", "V", "S", "L", "L", "S", "V", "L", "L", "S", "M", "Q", "G", "A", "V", "D", "I", "N", "K", "L", "C", "E", "E", "M", "L", "D", "N", "R", "A", "T", "L", "Q"]
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3780 "amino-acid": [
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3811 "gb_MW518838_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_MT_CDC_STM_227_2020_Segment_null_Host_Human":{
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3831 "amino-acid": [
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3848 "amino-acid": [
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3860 ]
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3865 "amino-acid": [
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3877 ]
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3879 "gb_MW521689_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_FL_QDX_3455_2020_Segment_null_Host_Human":{
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3881 "Nucleotide GTR":0.004018669473854881,
3882 "amino-acid": [
3883 ["S", "K", "M", "S", "D", "V", "K", "C", "T", "S", "V", "V", "L", "L", "S", "V", "L", "Q", "Q", "L", "R", "V", "E", "S", "S", "S", "K", "L", "W", "A", "Q", "C", "V", "Q", "L", "H", "N", "D", "I", "L", "L", "A", "K", "D", "T", "T", "E", "A", "F", "E", "K", "M", "V", "S", "L", "L", "S", "V", "L", "L", "S", "M", "Q", "G", "A", "V", "D", "I", "N", "K", "L", "C", "D", "E", "M", "L", "D", "N", "R", "A", "T", "L", "Q"]
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3930 "gb_MW524933_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_CA_CDC_STM_0000014_D07_2021_Segment_null_Host_Human":{
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3945 ]
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3947 "gb_MW525001_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_MI_CDC_STM_0000014_B04_2021_Segment_null_Host_Human":{
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3962 ]
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3967 "amino-acid": [
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3979 ]
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3984 "amino-acid": [
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3996 ]
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4000 "Nucleotide GTR":0.004034950627229877,
4001 "amino-acid": [
4002 ["S", "K", "M", "S", "D", "V", "K", "C", "T", "S", "V", "V", "L", "L", "S", "V", "L", "Q", "Q", "L", "R", "V", "E", "S", "S", "S", "K", "L", "W", "A", "Q", "C", "V", "Q", "L", "H", "N", "D", "I", "L", "L", "A", "K", "D", "T", "T", "E", "A", "F", "E", "K", "M", "V", "S", "L", "L", "S", "V", "L", "L", "S", "M", "Q", "G", "A", "V", "D", "I", "N", "K", "L", "C", "E", "E", "M", "L", "D", "N", "R", "A", "T", "L", "Q"]
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4047 ]
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4064 ]
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4081 ]
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4085 "Nucleotide GTR":0.004030909613639421,
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4098 ]
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4115 ]
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4117 "gb_MW550562_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_DC_CDC_2_3773950_2020_Segment_null_Host_Human":{
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4119 "Nucleotide GTR":0.004028273006727388,
4120 "amino-acid": [
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4134 "gb_MW550565_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_MN_CDC_2_3768593_2020_Segment_null_Host_Human":{
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4166 ]
4167 },
4168 "gb_MW550711_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_VA_CDC_2_3767585_2020_Segment_null_Host_Human":{
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4183 ]
4184 },
4185 "gb_MW550719_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_PA_CDC_2_3768763_2020_Segment_null_Host_Human":{
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4188 "amino-acid": [
4189 ["S", "K", "M", "S", "D", "V", "K", "C", "I", "S", "V", "V", "L", "L", "S", "V", "L", "Q", "Q", "L", "R", "V", "E", "S", "S", "S", "K", "L", "W", "A", "Q", "C", "V", "Q", "L", "H", "N", "D", "I", "L", "L", "A", "K", "D", "T", "T", "E", "A", "F", "E", "K", "M", "V", "S", "L", "L", "S", "V", "L", "L", "S", "M", "Q", "G", "A", "V", "D", "I", "N", "K", "L", "C", "E", "E", "M", "L", "D", "N", "R", "A", "T", "L", "Q"]
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4200 ]
4201 },
4202 "gb_MW556183_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_IL_CDC_9MR4_8909_2021_Segment_null_Host_Human":{
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4204 "Nucleotide GTR":0.004020979481510085,
4205 "amino-acid": [
4206 ["S", "K", "M", "S", "D", "V", "K", "C", "T", "S", "V", "V", "L", "L", "S", "V", "L", "Q", "Q", "L", "R", "V", "E", "S", "S", "S", "K", "L", "W", "A", "Q", "C", "V", "Q", "L", "H", "N", "D", "I", "L", "L", "A", "K", "D", "T", "T", "E", "A", "F", "E", "K", "M", "V", "S", "L", "L", "S", "V", "L", "L", "S", "M", "Q", "G", "A", "V", "D", "I", "N", "K", "L", "C", "E", "E", "M", "L", "G", "N", "R", "A", "T", "L", "Q"]
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4217 ]
4218 },
4219 "gb_MW559163_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_UT_UPHL_2101251032_2020_Segment_null_Host_Human":{
4220 "Global MG94xREV":0.004138466821219899,
4221 "Nucleotide GTR":0.004028911538532549,
4222 "amino-acid": [
4223 ["S", "K", "M", "S", "D", "V", "K", "C", "T", "S", "V", "V", "L", "L", "S", "V", "L", "Q", "Q", "L", "R", "V", "E", "S", "S", "S", "K", "L", "W", "A", "Q", "C", "V", "Q", "L", "H", "N", "N", "I", "L", "L", "A", "K", "D", "T", "T", "E", "A", "F", "E", "K", "M", "V", "S", "L", "L", "S", "V", "L", "L", "S", "M", "Q", "G", "A", "V", "D", "I", "N", "K", "L", "C", "E", "E", "M", "L", "D", "N", "R", "A", "T", "L", "Q"]
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4225 "codon": [
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4234 ]
4235 },
4236 "gb_MW559165_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_UT_UPHL_2101316853_2020_Segment_null_Host_Human":{
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4238 "Nucleotide GTR":0.004039892711421579,
4239 "amino-acid": [
4240 ["S", "K", "M", "S", "D", "V", "K", "C", "T", "S", "V", "V", "L", "L", "S", "V", "L", "Q", "Q", "L", "R", "V", "E", "S", "S", "S", "K", "L", "W", "A", "Q", "C", "I", "Q", "L", "H", "N", "D", "I", "L", "L", "A", "K", "D", "T", "T", "E", "A", "F", "E", "K", "M", "V", "S", "L", "L", "S", "V", "L", "L", "S", "M", "Q", "G", "A", "V", "D", "I", "N", "K", "L", "C", "E", "E", "M", "L", "D", "N", "R", "A", "T", "L", "Q"]
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4287 "gb_MW564881_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_CA_CZB_14887_2020_Segment_null_Host_Human":{
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4302 ]
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4304 "gb_MW565288_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_CA_CZB_14671_2020_Segment_null_Host_Human":{
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4306 "Nucleotide GTR":0,
4307 "amino-acid": [
4308 ["S", "K", "M", "S", "D", "V", "K", "C", "T", "S", "V", "V", "L", "L", "S", "V", "L", "Q", "Q", "L", "R", "V", "E", "S", "S", "S", "K", "L", "W", "A", "Q", "C", "V", "Q", "L", "H", "N", "D", "I", "L", "L", "A", "K", "D", "T", "T", "E", "A", "F", "E", "K", "M", "V", "S", "L", "L", "S", "V", "L", "L", "S", "M", "H", "G", "A", "V", "D", "I", "N", "K", "L", "C", "E", "E", "M", "L", "D", "N", "R", "A", "T", "L", "Q"]
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4319 ]
4320 },
4321 "gb_MW565436_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_CA_CZB_14349_2020_Segment_null_Host_Human":{
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4323 "Nucleotide GTR":0.004021428967918212,
4324 "amino-acid": [
4325 ["S", "K", "M", "S", "D", "V", "K", "C", "T", "S", "V", "V", "L", "L", "S", "V", "L", "Q", "Q", "L", "R", "V", "E", "S", "S", "S", "K", "L", "W", "A", "Q", "C", "V", "Q", "L", "H", "N", "D", "I", "L", "L", "A", "K", "D", "T", "T", "E", "A", "F", "E", "K", "M", "V", "S", "L", "L", "S", "V", "L", "L", "S", "M", "Q", "G", "A", "V", "D", "I", "N", "K", "L", "C", "E", "E", "M", "L", "D", "N", "R", "A", "T", "L", "Q"]
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4327 "codon": [
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4330 "nonsynonymous substitution count": [
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4336 ]
4337 },
4338 "gb_MW565664_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_CA_CZB_13917_2020_Segment_null_Host_Human":{
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4340 "Nucleotide GTR":0.00403028551886317,
4341 "amino-acid": [
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4346 ],
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4353 ]
4354 },
4355 "gb_MW566520_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_MO_QDX_4438_2020_Segment_null_Host_Human":{
4356 "Global MG94xREV":0.004128853482765106,
4357 "Nucleotide GTR":0.004019552688529031,
4358 "amino-acid": [
4359 ["S", "K", "M", "S", "D", "V", "K", "C", "T", "S", "V", "V", "L", "L", "S", "V", "L", "Q", "Q", "L", "R", "V", "E", "S", "S", "S", "K", "L", "W", "A", "Q", "C", "V", "Q", "L", "H", "N", "D", "I", "L", "L", "A", "K", "D", "T", "A", "E", "A", "F", "E", "K", "M", "V", "S", "L", "L", "S", "V", "L", "L", "S", "M", "Q", "G", "A", "V", "D", "I", "N", "K", "L", "C", "E", "E", "M", "L", "D", "N", "R", "A", "T", "L", "Q"]
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4371 },
4372 "gb_MW566853_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_FL_BPHL_2890_2020_Segment_null_Host_Human":{
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4404 ]
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4423 "gb_MW577066_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_NMDOH_2021021590_2021_Segment_null_Host_Human":{
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4440 "gb_MW577113_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_CA_LACPHL_AF00314_2021_Segment_null_Host_Human":{
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4455 ]
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4457 "gb_MW577730_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_UT_UPHL_2101009422_2021_Segment_null_Host_Human":{
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4472 ]
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4477 "amino-acid": [
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4642 ]
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4693 ]
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4710 ]
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4714 "Nucleotide GTR":0,
4715 "amino-acid": [
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4778 ]
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4817 "amino-acid": [
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4829 ]
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4834 "amino-acid": [
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4836 ],
4837 "codon": [
4838 ["TCT", "AAA", "ATG", "TCA", "GAT", "GTA", "AAG", "TGC", "ACA", "TCA", "GTA", "GTC", "TTA", "CTC", "TCA", "GTT", "TTG", "CAA", "CAA", "CTC", "AGA", "GTA", "GAA", "TCA", "TCA", "TCT", "AAA", "TTG", "TGG", "GCT", "CAA", "TGT", "GTC", "CAG", "TTA", "CAC", "AAT", "GAC", "ATT", "CTC", "TTA", "GCT", "AAA", "GAT", "ACT", "ACT", "GAA", "GCC", "TTT", "GAA", "AAA", "ATG", "GTT", "TCA", "CTA", "CTT", "TCT", "GTT", "TTG", "CTT", "TCC", "ATG", "CAG", "GGT", "GCT", "GTA", "GAC", "ATA", "AAC", "AAG", "TTT", "TGT", "GAA", "GAA", "ATG", "CTG", "GAT", "AAC", "AGG", "GCA", "ACC", "TTA", "CAA"]
4839 ],
4840 "nonsynonymous substitution count": [
4841 [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
4842 ],
4843 "original name":"gb_MW599561_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_MA_Broad_CRSP_00424_2021_Segment_null_Host_Human",
4844 "synonymous substitution count": [
4845 [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0]
4846 ]
4847 }
4848 },
4849 "attributes":{
4850 "Global MG94xREV":{
4851 "attribute type":"branch length",
4852 "display order":1
4853 },
4854 "Nucleotide GTR":{
4855 "attribute type":"branch length",
4856 "display order":0
4857 },
4858 "amino-acid":{
4859 "attribute type":"node label",
4860 "display order":1
4861 },
4862 "codon":{
4863 "attribute type":"node label",
4864 "display order":0
4865 },
4866 "nonsynonymous substitution count":{
4867 "attribute type":"branch label",
4868 "display order":1
4869 },
4870 "original name":{
4871 "attribute type":"node label",
4872 "display order":-1
4873 },
4874 "synonymous substitution count":{
4875 "attribute type":"branch label",
4876 "display order":0
4877 }
4878 }
4879 },
4880 "data partitions":{
4881 "0":{
4882 "coverage": [
4883 [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82]
4884 ],
4885 "name":"slac.filter.default"
4886 }
4887 },
4888 "fits":{
4889 "Global MG94xREV":{
4890 "AIC-c":3840.258949893966,
4891 "Equilibrium frequencies": [
4892 [0.03727065493954273],
4893 [0.01478865791197757],
4894 [0.01574228312828146],
4895 [0.02217242616150387],
4896 [0.02194837052967355],
4897 [0.008708914399684931],
4898 [0.009270496148860781],
4899 [0.01305715248964404],
4900 [0.009473746255311557],
4901 [0.003759096606752573],
4902 [0.004001496514577765],
4903 [0.005635960507253069],
4904 [0.03613049694357619],
4905 [0.01433625355806143],
4906 [0.01526070613392507],
4907 [0.02149414269642864],
4908 [0.02656177766161253],
4909 [0.01053947251554293],
4910 [0.01121909515724481],
4911 [0.01580168244630296],
4912 [0.01564200411797299],
4913 [0.006206605393269351],
4914 [0.006606829365309146],
4915 [0.009305475900176139],
4916 [0.0067516801640408],
4917 [0.002679005465266155],
4918 [0.002851757257991349],
4919 [0.004016595097298864],
4920 [0.02574921820331758],
4921 [0.01021705629073126],
4922 [0.0108758883884936],
4923 [0.01531828834925526],
4924 [0.04432648825702143],
4925 [0.01758834859048558],
4926 [0.01872250781094098],
4927 [0.02636996289632775],
4928 [0.0261034905375952],
4929 [0.01035762834045264],
4930 [0.01102552502352891],
4931 [0.01552904604014039],
4932 [0.01126725309274162],
4933 [0.004470743856433862],
4934 [0.004759033307884224],
4935 [0.006702923188418078],
4936 [0.04297048310762601],
4937 [0.01705029804337773],
4938 [0.01814976185249681],
4939 [0.02556327130214033],
4940 [0.02061566029799285],
4941 [0.03090876862853672],
4942 [0.03059643096942262],
4943 [0.01214038636209109],
4944 [0.01292324161775193],
4945 [0.01820190998992401],
4946 [0.005240249597590817],
4947 [0.00557815951380719],
4948 [0.00785663228955546],
4949 [0.05036657523757899],
4950 [0.0199850003332293],
4951 [0.02127370417498723],
4952 [0.02996322904103898]
4953 ],
4954 "Log Likelihood":-1668.27455266719,
4955 "Rate Distributions":{
4956 "non-synonymous/synonymous rate ratio for *test*": [
4957 [0.443287390277704, 1]
4958 ]
4959 },
4960 "display order":1,
4961 "estimated parameters":248
4962 },
4963 "Nucleotide GTR":{
4964 "AIC-c":4207.652962845961,
4965 "Equilibrium frequencies": [
4966 [0.316982214572576],
4967 [0.1955372510449963],
4968 [0.1847799360708139],
4969 [0.3027005983116138]
4970 ],
4971 "Log Likelihood":-1703.562299296798,
4972 "Rate Distributions":{
4973 "Substitution rate from nucleotide A to nucleotide C":0.2854468704485844,
4974 "Substitution rate from nucleotide A to nucleotide G":1,
4975 "Substitution rate from nucleotide A to nucleotide T":0.009867778509707405,
4976 "Substitution rate from nucleotide C to nucleotide G":0.02709890342210576,
4977 "Substitution rate from nucleotide C to nucleotide T":1.655264438379606,
4978 "Substitution rate from nucleotide G to nucleotide T":0.4850813979618184
4979 },
4980 "display order":0,
4981 "estimated parameters":397
4982 }
4983 },
4984 "input":{
4985 "file name":"/home/aglucaci/SARS-CoV-2/clades/B-1-617/nsp7.combined.fas",
4986 "number of sequences":196,
4987 "number of sites":83,
4988 "partition count":1,
4989 "trees":{
4990 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Host_Human,gb_MW518847_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_NC_CDC_STM_209_2020_Segment_null_Host_Human,gb_MW578033_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_UT_UPHL_2101679988_2020_Segment_null_Host_Human,gb_MW306408_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_CA_CZB_12385_2020_Segment_null_Host_Human,gb_MW064614_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_MI_QDX_560_2020_Segment_null_Host_Human,(gb_MW332236_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_RUS_2272_2020_Segment_null_Host_Human,gb_MW494399_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_FL_BPHL_2779_2021_Segment_null_Host_Human)Node126,gb_MW277234_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_AUS_VIC15990_2020_Segment_null_Host_Human,gb_MW596017_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_FL_CDC_STM_000007226_2021_Segment_null_Host_Human,gb_MW281864_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_West_Bank_Jericho_SARS_CoV_2_2020_Segment_null_Host_Human,gb_MW134122_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_CA_CZB_3285_2020_Segment_null_Host_Human,gb_MW565664_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_CA_CZB_13917_2020_Segment_null_Host_Human,gb_MW483597_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_CA_CZB_13466_2020_Segment_null_Host_Human,epi_isl_1652109_hCoV_19_Singapore_565_2021,gb_MW524933_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_CA_CDC_STM_0000014_D07_2021_Segment_null_Host_Human,gb_MW320996_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_AUS_VIC17273_2020_Segment_null_Host_Human,(gb_MT890291_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_FL_BPHL_0812_2020_Segment_null_Host_Human,gb_MW579030_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_UT_UPHL_2101421353_2021_Segment_null_Host_Human)Node61,gb_MW525004_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_NM_CDC_STM_0000014_B01_2021_Segment_null_Host_Human,(epi_isl_1564187_hCoV_19_England_CAMC_14D5BFD_2021,(gb_MW474140_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_WA_S2964_2020_Segment_null_Host_Human,gb_MW035496_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_WI_UW_1327_2020_Segment_null_Host_Human,gb_MW276622_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_CA_CZB_11799_2020_Segment_null_Host_Human)Node54,gb_MT937322_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_MD_MDH_0133_2020_Segment_null_Host_Human)Node52,gb_MW550711_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_VA_CDC_2_3767585_2020_Segment_null_Host_Human,gb_MW483436_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_CA_CZB_12951_2020_Segment_null_Host_Human,epi_isl_1416968_hCoV_19_Guadeloupe_IPP06229_2021,gb_MT451174_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_AUS_VIC278_2020_Segment_null_Host_Human,epi_isl_1583966_hCoV_19_England_CAMC_14D1B4C_2021,(gb_MW420606_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_UT_UPHL_2012663262_2020_Segment_null_Host_Human,gb_MW156759_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_AUS_VIC13581_2020_Segment_null_Host_Human,gb_MW486330_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_WI_UW_2532_2020_Segment_null_Host_Human)Node76,gb_MW406612_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_OK_CDC_2_3693466_2020_Segment_null_Host_Human,gb_MT940476_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_IND_GBRC336_2020_Segment_null_Host_Human,epi_isl_1415273_hCoV_19_India_MH_NCCS_87216_2021,gb_MW559163_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_UT_UPHL_2101251032_2020_Segment_null_Host_Human,gb_MT380729_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_VI_CDC_1999_2020_Segment_null_Host_Human,gb_MW321295_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_AUS_VIC17192_2020_Segment_null_Host_Human,(gb_MW454728_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_MA_MGH_03452_2020_Segment_null_Host_Human,epi_isl_1415264_hCoV_19_India_MH_NCCS_128864_2021,gb_MW599561_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_MA_Broad_CRSP_00424_2021_Segment_null_Host_Human,gb_MW517346_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_SC_COVID21_0036_2021_Segment_null_Host_Human)Node17,(gb_MW523879_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_IL_CDC_STM_A100264_2021_Segment_null_Host_Human,gb_MW240753_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_MD_MDH_0289_2020_Segment_null_Host_Human)Node13,gb_MW156992_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_AUS_VIC10174_2020_Segment_null_Host_Human,gb_MW562737_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_UT_UPHL_2102453487_2020_Segment_null_Host_Human,(gb_MT451046_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_AUS_VIC142_2020_Segment_null_Host_Human,gb_MW596147_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_NC_CDC_STM_000008176_2021_Segment_null_Host_Human)Node26,epi_isl_1641831_hCoV_19_Germany_BY_RKI_I_076082_2021,gb_MT291831_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_CHN_Beijing_IME_BJ01_2020_Segment_null_Host_Human,gb_MW596107_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_CA_CDC_STM_000008078_2021_Segment_null_Host_Human,gb_MW590718_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_IND_GBRC434_2020_Segment_null_Host_Human,gb_MW521457_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_1516xF10_2020_Segment_null_Host_Human,gb_MT731735_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_BGD_BCSIR_NILMRC_137_2020_Segment_null_Host_Human,gb_MW521689_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_FL_QDX_3455_2020_Segment_null_Host_Human,gb_MT825091_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_IRN_COVID19_IRVSH1_2020_Segment_null_Host_Human,gb_MW030253_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_PER_covper022_2020_Segment_null_Host_Human)"
4991 }
4992 },
4993 "tested":{
4994 "0":{
4995 "Node126":"test",
4996 "Node13":"test",
4997 "Node133":"test",
4998 "Node154":"test",
4999 "Node160":"test",
5000 "Node166":"test",
5001 "Node17":"test",
5002 "Node171":"test",
5003 "Node180":"test",
5004 "Node190":"test",
5005 "Node200":"test",
5006 "Node203":"test",
5007 "Node216":"test",
5008 "Node219":"test",
5009 "Node226":"test",
5010 "Node253":"test",
5011 "Node26":"test",
5012 "Node261":"test",
5013 "Node270":"test",
5014 "Node272":"test",
5015 "Node281":"test",
5016 "Node297":"test",
5017 "Node302":"test",
5018 "Node317":"test",
5019 "Node325":"test",
5020 "Node327":"test",
5021 "Node330":"test",
5022 "Node335":"test",
5023 "Node365":"test",
5024 "Node370":"test",
5025 "Node372":"test",
5026 "Node373":"test",
5027 "Node387":"test",
5028 "Node52":"test",
5029 "Node54":"test",
5030 "Node61":"test",
5031 "Node76":"test",
5032 "REFERENCE":"test",
5033 "epi_isl_1181694_hCoV_19_USA_DE_DHSS_B1064373_2021":"test",
5034 "epi_isl_1409773_hCoV_19_England_CAMC_141DB08_2021":"test",
5035 "epi_isl_1415264_hCoV_19_India_MH_NCCS_128864_2021":"test",
5036 "epi_isl_1415273_hCoV_19_India_MH_NCCS_87216_2021":"test",
5037 "epi_isl_1416968_hCoV_19_Guadeloupe_IPP06229_2021":"test",
5038 "epi_isl_1564187_hCoV_19_England_CAMC_14D5BFD_2021":"test",
5039 "epi_isl_1583966_hCoV_19_England_CAMC_14D1B4C_2021":"test",
5040 "epi_isl_1635400_hCoV_19_Scotland_CAMC_14DEDB2_2021":"test",
5041 "epi_isl_1641831_hCoV_19_Germany_BY_RKI_I_076082_2021":"test",
5042 "epi_isl_1648157_hCoV_19_USA_CA_CDC_QDX23571833_2021":"test",
5043 "epi_isl_1652109_hCoV_19_Singapore_565_2021":"test",
5044 "gb_MT226610_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_CHN_KMS1_2020_Segment_null_Host_Human":"test",
5045 "gb_MT291831_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_CHN_Beijing_IME_BJ01_2020_Segment_null_Host_Human":"test",
5046 "gb_MT380729_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_VI_CDC_1999_2020_Segment_null_Host_Human":"test",
5047 "gb_MT412283_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_CT_UW_5772_2020_Segment_null_Host_Human":"test",
5048 "gb_MT446348_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_LA_BIE_080_2020_Segment_null_Host_Human":"test",
5049 "gb_MT451046_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_AUS_VIC142_2020_Segment_null_Host_Human":"test",
5050 "gb_MT451174_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_AUS_VIC278_2020_Segment_null_Host_Human":"test",
5051 "gb_MT451724_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_AUS_VIC1057_2020_Segment_null_Host_Human":"test",
5052 "gb_MT460125_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_CA_CZB_1105_2020_Segment_null_Host_Human":"test",
5053 "gb_MT470179_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_France_40002VJ_2020_Segment_null_Host_Human":"test",
5054 "gb_MT499218_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_TUN_COV1663_2020_Segment_null_Host_Human":"test",
5055 "gb_MT512423_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_VI_CDC_3688_2020_Segment_null_Host_Human":"test",
5056 "gb_MT609578_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_VA_DCLS_0348_2020_Segment_null_Host_Human":"test",
5057 "gb_MT609579_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_VA_DCLS_0349_2020_Segment_null_Host_Human":"test",
5058 "gb_MT612207_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_AUS_VIC1606_2020_Segment_null_Host_Human":"test",
5059 "gb_MT628119_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_CA_CZB_1404_2020_Segment_null_Host_Human":"test",
5060 "gb_MT628199_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_CA_CZB_1525_2020_Segment_null_Host_Human":"test",
5061 "gb_MT642069_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_WA_S1116_2020_Segment_null_Host_Human":"test",
5062 "gb_MT704128_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_MD_MDH_0028_2020_Segment_null_Host_Human":"test",
5063 "gb_MT731735_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_BGD_BCSIR_NILMRC_137_2020_Segment_null_Host_Human":"test",
5064 "gb_MT755838_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_BGD_BCSIR_NILMRC_245_2020_Segment_null_Host_Human":"test",
5065 "gb_MT786817_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_IN_QDX_182_2020_Segment_null_Host_Human":"test",
5066 "gb_MT810119_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_KOR_CNUHV03_CA22_2020_Segment_null_Host_Human":"test",
5067 "gb_MT810681_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_SEARCH_1240_SAN_2020_Segment_null_Host_Human":"test",
5068 "gb_MT820487_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_SAU_KAIMRC67_2020_Segment_null_Host_Human":"test",
5069 "gb_MT825091_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_IRN_COVID19_IRVSH1_2020_Segment_null_Host_Human":"test",
5070 "gb_MT827207_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_MD_MDH_0041_2020_Segment_null_Host_Human":"test",
5071 "gb_MT831570_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_WA_S2629_2020_Segment_null_Host_Human":"test",
5072 "gb_MT834677_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_FL_BPHL_0519_2020_Segment_null_Host_Human":"test",
5073 "gb_MT856455_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_BGD_BCSIR_NILMRC_306_2020_Segment_null_Host_Human":"test",
5074 "gb_MT873107_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_MA_MGH_00733_2020_Segment_null_Host_Human":"test",
5075 "gb_MT876607_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_BGD_BCSIR_NILMRC_291_2020_Segment_null_Host_Human":"test",
5076 "gb_MT890291_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_FL_BPHL_0812_2020_Segment_null_Host_Human":"test",
5077 "gb_MT890320_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_FL_BPHL_0841_2020_Segment_null_Host_Human":"test",
5078 "gb_MT937322_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_MD_MDH_0133_2020_Segment_null_Host_Human":"test",
5079 "gb_MT937823_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_MD_MDH_0160_2020_Segment_null_Host_Human":"test",
5080 "gb_MT940476_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_IND_GBRC336_2020_Segment_null_Host_Human":"test",
5081 "gb_MT956712_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_FL_BPHL_1102_2020_Segment_null_Host_Human":"test",
5082 "gb_MT966161_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_FL_BPHL_0917_2020_Segment_null_Host_Human":"test",
5083 "gb_MT969815_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_AUS_VIC2996_2020_Segment_null_Host_Human":"test",
5084 "gb_MT971875_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_AUS_VIC6260_2020_Segment_null_Host_Human":"test",
5085 "gb_MT973055_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_AUS_VIC6608_2020_Segment_null_Host_Human":"test",
5086 "gb_MT973439_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_AUS_TAS110_2020_Segment_null_Host_Human":"test",
5087 "gb_MT981432_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_COVID20_0585_2020_Segment_null_Host_Human":"test",
5088 "gb_MT990449_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_EGY_CU001a_S1_2020_Segment_null_Host_Human":"test",
5089 "gb_MT992730_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_VA_DCLS_1113_2020_Segment_null_Host_Human":"test",
5090 "gb_MT997720_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_MN_MDH_1602_2020_Segment_null_Host_Human":"test",
5091 "gb_MW012269_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_SRB_NP01_2020_Segment_null_Host_Human":"test",
5092 "gb_MW030253_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_PER_covper022_2020_Segment_null_Host_Human":"test",
5093 "gb_MW035496_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_WI_UW_1327_2020_Segment_null_Host_Human":"test",
5094 "gb_MW035538_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_WI_UW_1372_2020_Segment_null_Host_Human":"test",
5095 "gb_MW053925_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_UT_02760_2020_Segment_null_Host_Human":"test",
5096 "gb_MW056173_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_FL_BPHL_1526_2020_Segment_null_Host_Human":"test",
5097 "gb_MW064614_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_MI_QDX_560_2020_Segment_null_Host_Human":"test",
5098 "gb_MW065141_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_IL_QDX_1100_2020_Segment_null_Host_Human":"test",
5099 "gb_MW067706_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_VA_DCLS_1288_2020_Segment_null_Host_Human":"test",
5100 "gb_MW067772_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_VA_DCLS_1293_2020_Segment_null_Host_Human":"test",
5101 "gb_MW067820_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_COVID20_1113_2020_Segment_null_Host_Human":"test",
5102 "gb_MW127521_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_SRB_KS_0796_16_04_2020_Segment_null_Host_Human":"test",
5103 "gb_MW130870_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_WI_CDC_6238_2020_Segment_null_Host_Human":"test",
5104 "gb_MW134122_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_CA_CZB_3285_2020_Segment_null_Host_Human":"test",
5105 "gb_MW153116_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_AUS_VIC7846_2020_Segment_null_Host_Human":"test",
5106 "gb_MW155687_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_AUS_VIC13648_2020_Segment_null_Host_Human":"test",
5107 "gb_MW156759_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_AUS_VIC13581_2020_Segment_null_Host_Human":"test",
5108 "gb_MW156761_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_AUS_VIC13590_2020_Segment_null_Host_Human":"test",
5109 "gb_MW156992_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_AUS_VIC10174_2020_Segment_null_Host_Human":"test",
5110 "gb_MW181759_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_Homo_sapiens_HKG_Case4999_2020_Segment_null_Host_Human":"test",
5111 "gb_MW206619_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_FL_BPHL_1798_2020_Segment_null_Host_Human":"test",
5112 "gb_MW228252_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_NMDOH_2020309735_2020_Segment_null_Host_Human":"test",
5113 "gb_MW240747_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_MD_MDH_0283_2020_Segment_null_Host_Human":"test",
5114 "gb_MW240753_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_MD_MDH_0289_2020_Segment_null_Host_Human":"test",
5115 "gb_MW276413_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_CA_CZB_10909_2020_Segment_null_Host_Human":"test",
5116 "gb_MW276537_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_CA_CZB_11549_2020_Segment_null_Host_Human":"test",
5117 "gb_MW276545_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_CA_CZB_11572_2020_Segment_null_Host_Human":"test",
5118 "gb_MW276613_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_CA_CZB_11950_2020_Segment_null_Host_Human":"test",
5119 "gb_MW276622_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_CA_CZB_11799_2020_Segment_null_Host_Human":"test",
5120 "gb_MW276661_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_CA_CZB_11859_2020_Segment_null_Host_Human":"test",
5121 "gb_MW276915_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_AUS_VIC15878_2020_Segment_null_Host_Human":"test",
5122 "gb_MW277113_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_AUS_VIC12012_2020_Segment_null_Host_Human":"test",
5123 "gb_MW277234_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_AUS_VIC15990_2020_Segment_null_Host_Human":"test",
5124 "gb_MW277460_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_AUS_VIC12022_2020_Segment_null_Host_Human":"test",
5125 "gb_MW277478_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_AUS_VIC16104_2020_Segment_null_Host_Human":"test",
5126 "gb_MW281864_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_West_Bank_Jericho_SARS_CoV_2_2020_Segment_null_Host_Human":"test",
5127 "gb_MW306408_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_CA_CZB_12385_2020_Segment_null_Host_Human":"test",
5128 "gb_MW320996_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_AUS_VIC17273_2020_Segment_null_Host_Human":"test",
5129 "gb_MW321295_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_AUS_VIC17192_2020_Segment_null_Host_Human":"test",
5130 "gb_MW332236_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_RUS_2272_2020_Segment_null_Host_Human":"test",
5131 "gb_MW338802_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_VA_DCLS_2062_2020_Segment_null_Host_Human":"test",
5132 "gb_MW341806_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_IL_UW_1937_2020_Segment_null_Host_Human":"test",
5133 "gb_MW365025_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_CHL_Santiago_PUC_MVL_0397_2020_Segment_null_Host_Human":"test",
5134 "gb_MW403680_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_VA_DCLS_2414_2020_Segment_null_Host_Human":"test",
5135 "gb_MW406516_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_AR_CDC_2_3693765_2020_Segment_null_Host_Human":"test",
5136 "gb_MW406549_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_OK_CDC_2_3693789_2020_Segment_null_Host_Human":"test",
5137 "gb_MW406612_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_OK_CDC_2_3693466_2020_Segment_null_Host_Human":"test",
5138 "gb_MW411628_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_VA_DCLS_2300_2020_Segment_null_Host_Human":"test",
5139 "gb_MW420097_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_UT_UPHL_2012061461_2020_Segment_null_Host_Human":"test",
5140 "gb_MW420606_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_UT_UPHL_2012663262_2020_Segment_null_Host_Human":"test",
5141 "gb_MW420777_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_UT_UPHL_2012868464_2020_Segment_null_Host_Human":"test",
5142 "gb_MW446829_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_MD_MDH_0493_2020_Segment_null_Host_Human":"test",
5143 "gb_MW449300_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_UT_UPHL_2012152791_2020_Segment_null_Host_Human":"test",
5144 "gb_MW454656_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_MA_MGH_03263_2020_Segment_null_Host_Human":"test",
5145 "gb_MW454728_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_MA_MGH_03452_2020_Segment_null_Host_Human":"test",
5146 "gb_MW454734_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_MA_MGH_03468_2020_Segment_null_Host_Human":"test",
5147 "gb_MW460617_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_CA_QDX_2810_2020_Segment_null_Host_Human":"test",
5148 "gb_MW467452_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_EGY_EGY_CCHE57357_A_44_2020_Segment_null_Host_Human":"test",
5149 "gb_MW467466_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_EGY_EGY_CCHE57357_A_58_2020_Segment_null_Host_Human":"test",
5150 "gb_MW474140_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_WA_S2964_2020_Segment_null_Host_Human":"test",
5151 "gb_MW474144_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_WA_S2968_2020_Segment_null_Host_Human":"test",
5152 "gb_MW482871_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_GA_CDC_9H24_7433_2020_Segment_null_Host_Human":"test",
5153 "gb_MW483435_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_CA_CZB_12950_2020_Segment_null_Host_Human":"test",
5154 "gb_MW483436_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_CA_CZB_12951_2020_Segment_null_Host_Human":"test",
5155 "gb_MW483597_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_CA_CZB_13466_2020_Segment_null_Host_Human":"test",
5156 "gb_MW486275_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_WI_UW_2499_2020_Segment_null_Host_Human":"test",
5157 "gb_MW486330_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_WI_UW_2532_2020_Segment_null_Host_Human":"test",
5158 "gb_MW493688_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_NMDOH_2021014099_2021_Segment_null_Host_Human":"test",
5159 "gb_MW494399_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_FL_BPHL_2779_2021_Segment_null_Host_Human":"test",
5160 "gb_MW495176_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_MA_QDX_2980_2021_Segment_null_Host_Human":"test",
5161 "gb_MW495235_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_NH_QDX_3003_2021_Segment_null_Host_Human":"test",
5162 "gb_MW505146_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_CA_QDX_3110_2020_Segment_null_Host_Human":"test",
5163 "gb_MW517337_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_SC_COVID21_0048_2021_Segment_null_Host_Human":"test",
5164 "gb_MW517339_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_SC_COVID21_0044_2021_Segment_null_Host_Human":"test",
5165 "gb_MW517346_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_SC_COVID21_0036_2021_Segment_null_Host_Human":"test",
5166 "gb_MW518128_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_AZ_CDC_STM_291_2021_Segment_null_Host_Human":"test",
5167 "gb_MW518838_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_MT_CDC_STM_227_2020_Segment_null_Host_Human":"test",
5168 "gb_MW518847_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_NC_CDC_STM_209_2020_Segment_null_Host_Human":"test",
5169 "gb_MW519847_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_IN_CDC_STM_A100107_2021_Segment_null_Host_Human":"test",
5170 "gb_MW521457_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_1516xF10_2020_Segment_null_Host_Human":"test",
5171 "gb_MW521689_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_FL_QDX_3455_2020_Segment_null_Host_Human":"test",
5172 "gb_MW523832_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_AZ_CDC_STM_A100333_2021_Segment_null_Host_Human":"test",
5173 "gb_MW523879_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_IL_CDC_STM_A100264_2021_Segment_null_Host_Human":"test",
5174 "gb_MW524933_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_CA_CDC_STM_0000014_D07_2021_Segment_null_Host_Human":"test",
5175 "gb_MW525001_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_MI_CDC_STM_0000014_B04_2021_Segment_null_Host_Human":"test",
5176 "gb_MW525004_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_NM_CDC_STM_0000014_B01_2021_Segment_null_Host_Human":"test",
5177 "gb_MW527392_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_IRQ_NN_Erbil_2021_Segment_null_Host_Human":"test",
5178 "gb_MW539883_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_MA_MASPHL_00646_2020_Segment_null_Host_Human":"test",
5179 "gb_MW539888_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_MA_MASPHL_00651_2020_Segment_null_Host_Human":"test",
5180 "gb_MW543034_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_AZ_CDC_IR9E_6611_2020_Segment_null_Host_Human":"test",
5181 "gb_MW545201_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_CA_QDX_3602_2021_Segment_null_Host_Human":"test",
5182 "gb_MW545441_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_CA_LACPHL_AF00210_2021_Segment_null_Host_Human":"test",
5183 "gb_MW548941_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_WA_S3648_2021_Segment_null_Host_Human":"test",
5184 "gb_MW550186_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_CA_QDX_4128_2021_Segment_null_Host_Human":"test",
5185 "gb_MW550562_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_DC_CDC_2_3773950_2020_Segment_null_Host_Human":"test",
5186 "gb_MW550565_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_MN_CDC_2_3768593_2020_Segment_null_Host_Human":"test",
5187 "gb_MW550677_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_NJ_CDC_2_3768077_2020_Segment_null_Host_Human":"test",
5188 "gb_MW550711_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_VA_CDC_2_3767585_2020_Segment_null_Host_Human":"test",
5189 "gb_MW550719_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_PA_CDC_2_3768763_2020_Segment_null_Host_Human":"test",
5190 "gb_MW556183_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_IL_CDC_9MR4_8909_2021_Segment_null_Host_Human":"test",
5191 "gb_MW559163_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_UT_UPHL_2101251032_2020_Segment_null_Host_Human":"test",
5192 "gb_MW559165_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_UT_UPHL_2101316853_2020_Segment_null_Host_Human":"test",
5193 "gb_MW562693_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_UT_UPHL_2102046035_2020_Segment_null_Host_Human":"test",
5194 "gb_MW562737_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_UT_UPHL_2102453487_2020_Segment_null_Host_Human":"test",
5195 "gb_MW564881_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_CA_CZB_14887_2020_Segment_null_Host_Human":"test",
5196 "gb_MW565288_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_CA_CZB_14671_2020_Segment_null_Host_Human":"test",
5197 "gb_MW565436_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_CA_CZB_14349_2020_Segment_null_Host_Human":"test",
5198 "gb_MW565664_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_CA_CZB_13917_2020_Segment_null_Host_Human":"test",
5199 "gb_MW566520_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_MO_QDX_4438_2020_Segment_null_Host_Human":"test",
5200 "gb_MW566853_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_FL_BPHL_2890_2020_Segment_null_Host_Human":"test",
5201 "gb_MW570895_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_CA_LACPHL_AF00321_2021_Segment_null_Host_Human":"test",
5202 "gb_MW571123_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_GHA_WACCBIP_nCoV_GS68_2021_Segment_null_Host_Human":"test",
5203 "gb_MW577066_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_NMDOH_2021021590_2021_Segment_null_Host_Human":"test",
5204 "gb_MW577113_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_CA_LACPHL_AF00314_2021_Segment_null_Host_Human":"test",
5205 "gb_MW577730_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_UT_UPHL_2101009422_2021_Segment_null_Host_Human":"test",
5206 "gb_MW577930_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_UT_UPHL_2101239410_2020_Segment_null_Host_Human":"test",
5207 "gb_MW578033_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_UT_UPHL_2101679988_2020_Segment_null_Host_Human":"test",
5208 "gb_MW578122_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_UT_UPHL_2101329819_2021_Segment_null_Host_Human":"test",
5209 "gb_MW578256_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_MO_CDC_2_3714171_2020_Segment_null_Host_Human":"test",
5210 "gb_MW579014_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_UT_UPHL_2101155076_2021_Segment_null_Host_Human":"test",
5211 "gb_MW579030_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_UT_UPHL_2101421353_2021_Segment_null_Host_Human":"test",
5212 "gb_MW583265_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_CA_CDC_STM_000001669_2021_Segment_null_Host_Human":"test",
5213 "gb_MW585982_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_MO_CDC_STM_000003668_2021_Segment_null_Host_Human":"test",
5214 "gb_MW585995_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_WV_CDC_STM_000003152_2021_Segment_null_Host_Human":"test",
5215 "gb_MW586140_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_FL_CDC_STM_000005978_2021_Segment_null_Host_Human":"test",
5216 "gb_MW586167_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_NC_CDC_STM_000005966_2021_Segment_null_Host_Human":"test",
5217 "gb_MW586286_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_FL_CDC_STM_000005415_2021_Segment_null_Host_Human":"test",
5218 "gb_MW586766_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_CA_QDX_4270_2021_Segment_null_Host_Human":"test",
5219 "gb_MW589574_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_4494168_2021_Segment_null_Host_Human":"test",
5220 "gb_MW589620_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_4464910_2020_Segment_null_Host_Human":"test",
5221 "gb_MW590718_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_IND_GBRC434_2020_Segment_null_Host_Human":"test",
5222 "gb_MW593416_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_FHCRC_880_2020_Segment_null_Host_Human":"test",
5223 "gb_MW593460_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_FHCRC_4649_2020_Segment_null_Host_Human":"test",
5224 "gb_MW596017_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_FL_CDC_STM_000007226_2021_Segment_null_Host_Human":"test",
5225 "gb_MW596107_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_CA_CDC_STM_000008078_2021_Segment_null_Host_Human":"test",
5226 "gb_MW596147_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_NC_CDC_STM_000008176_2021_Segment_null_Host_Human":"test",
5227 "gb_MW599561_Organism_Severe_acute_respiratory_syndrome_coronavirus_2_Strain_Name_SARS_CoV_2_human_USA_MA_Broad_CRSP_00424_2021_Segment_null_Host_Human":"test"
5228 }
5229 },
5230 "timers":{
5231 "Model fitting":{
5232 "order":1,
5233 "timer":5
5234 },
5235 "Primary SLAC analysis":{
5236 "order":2,
5237 "timer":2
5238 },
5239 "Total time":{
5240 "order":0,
5241 "timer":7
5242 }
5243 }
5244 }