annotate test-data/meme-out1.json @ 7:c62ddfa33ac5 draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 795426da748ca2c21d52b72b2a78e8e6135e4079"
author iuc
date Thu, 19 Mar 2020 10:15:12 -0400
parents 7827dfb71693
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7827dfb71693 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 8d5ae1d04c43988fdcc458f4f08376a15e72db8e"
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7827dfb71693 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 8d5ae1d04c43988fdcc458f4f08376a15e72db8e"
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7827dfb71693 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 8d5ae1d04c43988fdcc458f4f08376a15e72db8e"
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7827dfb71693 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 8d5ae1d04c43988fdcc458f4f08376a15e72db8e"
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7827dfb71693 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 8d5ae1d04c43988fdcc458f4f08376a15e72db8e"
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7827dfb71693 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 8d5ae1d04c43988fdcc458f4f08376a15e72db8e"
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7827dfb71693 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 8d5ae1d04c43988fdcc458f4f08376a15e72db8e"
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571 ]
551616a65f8f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
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572 },
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573 "headers": [
551616a65f8f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
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574 ["alpha;", "Synonymous substitution rate at a site"],
551616a65f8f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
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575 ["&beta;<sup>-</sup>", "Non-synonymous substitution rate at a site for the negative/neutral evolution component"],
551616a65f8f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
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576 ["p<sup>-</sup>", "Mixture distribution weight allocated to &beta;<sup>-</sup>; loosely -- the proportion of the tree evolving neutrally or under negative selection"],
551616a65f8f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
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577 ["&beta;<sup>+</sup>", "Non-synonymous substitution rate at a site for the positive/neutral evolution component"],
551616a65f8f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
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diff changeset
578 ["p<sup>+</sup>", "Mixture distribution weight allocated to &beta;<sup>+</sup>; loosely -- the proportion of the tree evolving neutrally or under positive selection"],
551616a65f8f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
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diff changeset
579 ["LRT", "Likelihood ratio test statistic for episodic diversification, i.e., p<sup>+</sup> &gt; 0 <emph>and<emph> &beta;<sup>+</sup> &gt; &alpha;"],
551616a65f8f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
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580 ["p-value", "Asymptotic p-value for episodic diversification, i.e., p<sup>+</sup> &gt; 0 <emph>and<emph> &beta;<sup>+</sup> &gt; &alpha;"],
551616a65f8f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
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diff changeset
581 ["# branches under selection", "The (very approximate and rough) estimate of how many branches may have been under selection at this site, i.e., had an empirical Bayes factor of 100 or more for the &beta;<sup>+</sup> rate"],
551616a65f8f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
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diff changeset
582 ["Total branch length", "The total length of branches contributing to inference at this site, and used to scale dN-dS"]
551616a65f8f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
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583 ]
551616a65f8f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
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584 },
551616a65f8f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
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585 "analysis":{
551616a65f8f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
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586 "authors":"Sergei L. Kosakovsky Pond, Steven Weaver",
551616a65f8f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
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diff changeset
587 "citation":"Detecting Individual Sites Subject to Episodic Diversifying Selection. _PLoS Genet_ 8(7): e1002764.",
551616a65f8f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
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588 "contact":"spond@temple.edu",
551616a65f8f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
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diff changeset
589 "info":"MEME (Mixed Effects Model of Evolution)\n estimates a site-wise synonymous (&alpha;) and a two-category mixture of non-synonymous\n (&beta;-, with proportion p-, and &beta;+ with proportion [1-p-]) rates, and\n uses a likelihood ratio test to determine if &beta;+ > &alpha; at a site.\n The estimates aggregate information over a proportion of branches at a site,\n so the signal is derived from\n episodic diversification, which is a combination of strength of selection [effect size] and\n the proportion of the tree affected. A subset of branches can be selected\n for testing as well, in which case an additional (nuisance) parameter will be\n inferred -- the non-synonymous rate on branches NOT selected for testing. Multiple partitions within a NEXUS file are also supported\n for recombination - aware analysis.\n ",
551616a65f8f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
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diff changeset
590 "requirements":"in-frame codon alignment and a phylogenetic tree",
551616a65f8f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
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591 "version":"2.1.1"
551616a65f8f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
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592 },
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593 "branch attributes":{
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594 "0":{
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595 "CHICKEN_CK_160_2005":{
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596 "EBF site 100 (partition 1)":1,
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598 "EBF site 104 (partition 1)":1,
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599 "EBF site 11 (partition 1)":1,
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600 "EBF site 112 (partition 1)":1,
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601 "EBF site 113 (partition 1)":1,
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602 "EBF site 117 (partition 1)":1,
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603 "EBF site 12 (partition 1)":1,
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604 "EBF site 136 (partition 1)":1,
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605 "EBF site 140 (partition 1)":1,
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608 "EBF site 146 (partition 1)":1,
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609 "EBF site 152 (partition 1)":1,
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7827dfb71693 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 8d5ae1d04c43988fdcc458f4f08376a15e72db8e"
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679 "EBF site 506 (partition 1)":0.6145034828797277,
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681 "EBF site 515 (partition 1)":0.1518467497901648,
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689 "EBF site 553 (partition 1)":1,
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parents: 0
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551616a65f8f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
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diff changeset
691 "EBF site 560 (partition 1)":1,
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parents:
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692 "EBF site 564 (partition 1)":1,
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820 },
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861 "EBF site 250 (partition 1)":1,
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920 "EBF site 59 (partition 1)":1,
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933 },
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diff changeset
945 "EBF site 142 (partition 1)":1,
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diff changeset
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952 "EBF site 156 (partition 1)":1,
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955 "EBF site 167 (partition 1)":10.27744649092194,
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956 "EBF site 170 (partition 1)":1,
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957 "EBF site 171 (partition 1)":1,
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958 "EBF site 172 (partition 1)":1,
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959 "EBF site 175 (partition 1)":1,
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diff changeset
963 "EBF site 197 (partition 1)":1,
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diff changeset
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967 "EBF site 209 (partition 1)":1,
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969 "EBF site 213 (partition 1)":1,
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diff changeset
970 "EBF site 217 (partition 1)":1,
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1001 "EBF site 362 (partition 1)":1,
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1002 "EBF site 369 (partition 1)":1,
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1004 "EBF site 389 (partition 1)":1,
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1008 "EBF site 433 (partition 1)":1,
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1016 "EBF site 499 (partition 1)":1,
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parents:
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parents: 0
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1018 "EBF site 506 (partition 1)":0.8206924955409612,
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1021 "EBF site 52 (partition 1)":1,
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diff changeset
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parents:
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1024 "EBF site 537 (partition 1)":1,
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1025 "EBF site 539 (partition 1)":1,
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parents:
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1026 "EBF site 545 (partition 1)":1,
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parents:
diff changeset
1027 "EBF site 549 (partition 1)":1,
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parents:
diff changeset
1028 "EBF site 553 (partition 1)":1,
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parents: 0
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1029 "EBF site 558 (partition 1)":0.9448958945225298,
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diff changeset
1030 "EBF site 560 (partition 1)":1,
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parents:
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1031 "EBF site 564 (partition 1)":1,
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1032 "EBF site 58 (partition 1)":1,
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1033 "EBF site 59 (partition 1)":1,
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1034 "EBF site 60 (partition 1)":1,
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1035 "EBF site 68 (partition 1)":1,
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1036 "EBF site 69 (partition 1)":1,
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1037 "EBF site 78 (partition 1)":1,
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diff changeset
1038 "EBF site 79 (partition 1)":1,
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1040 "EBF site 84 (partition 1)":1,
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parents:
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1042 "EBF site 89 (partition 1)":1,
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parents: 0
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1043 "Global MG94xREV":0.002547563847867838,
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parents: 0
diff changeset
1044 "Nucleotide GTR":0.002596872549070691,
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parents: 0
diff changeset
1045 "original name":"MALLARD_VIETNAM_16_2003"
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parents:
diff changeset
1046 },
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parents: 0
diff changeset
1047 "Node11":{
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parents:
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diff changeset
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1055 "EBF site 12 (partition 1)":1,
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diff changeset
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parents:
diff changeset
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parents:
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1068 "EBF site 167 (partition 1)":6.755467986468297,
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diff changeset
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1080 "EBF site 209 (partition 1)":1,
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diff changeset
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parents:
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diff changeset
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parents:
diff changeset
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parents:
diff changeset
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parents:
diff changeset
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parents:
diff changeset
1100 "EBF site 309 (partition 1)":1,
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parents:
diff changeset
1101 "EBF site 312 (partition 1)":1,
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parents:
diff changeset
1102 "EBF site 315 (partition 1)":1,
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parents:
diff changeset
1103 "EBF site 327 (partition 1)":1,
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parents:
diff changeset
1104 "EBF site 329 (partition 1)":1,
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parents:
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1105 "EBF site 332 (partition 1)":1,
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parents: 0
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1106 "EBF site 336 (partition 1)":0.1284097991633453,
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parents: 0
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1107 "EBF site 341 (partition 1)":0.9637996906857108,
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parents:
diff changeset
1108 "EBF site 342 (partition 1)":1,
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parents:
diff changeset
1109 "EBF site 348 (partition 1)":1,
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parents:
diff changeset
1110 "EBF site 351 (partition 1)":1,
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parents:
diff changeset
1111 "EBF site 353 (partition 1)":1,
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parents:
diff changeset
1112 "EBF site 354 (partition 1)":1,
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parents:
diff changeset
1113 "EBF site 361 (partition 1)":1,
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parents:
diff changeset
1114 "EBF site 362 (partition 1)":1,
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parents:
diff changeset
1115 "EBF site 369 (partition 1)":1,
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parents:
diff changeset
1116 "EBF site 379 (partition 1)":1,
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diff changeset
1117 "EBF site 389 (partition 1)":1,
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parents:
diff changeset
1118 "EBF site 417 (partition 1)":1,
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parents:
diff changeset
1119 "EBF site 424 (partition 1)":1,
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parents:
diff changeset
1120 "EBF site 431 (partition 1)":1,
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parents:
diff changeset
1121 "EBF site 433 (partition 1)":1,
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diff changeset
1122 "EBF site 441 (partition 1)":1,
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parents:
diff changeset
1123 "EBF site 445 (partition 1)":1,
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parents:
diff changeset
1124 "EBF site 45 (partition 1)":1,
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parents:
diff changeset
1125 "EBF site 466 (partition 1)":1,
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parents:
diff changeset
1126 "EBF site 477 (partition 1)":1,
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parents:
diff changeset
1127 "EBF site 488 (partition 1)":1,
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parents:
diff changeset
1128 "EBF site 489 (partition 1)":1,
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parents:
diff changeset
1129 "EBF site 499 (partition 1)":1,
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parents:
diff changeset
1130 "EBF site 50 (partition 1)":1,
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parents: 0
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1131 "EBF site 506 (partition 1)":0.9079928171643082,
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parents:
diff changeset
1132 "EBF site 509 (partition 1)":1,
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parents: 0
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1133 "EBF site 515 (partition 1)":0.4489157288941226,
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parents:
diff changeset
1134 "EBF site 52 (partition 1)":1,
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parents:
diff changeset
1135 "EBF site 527 (partition 1)":1,
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parents:
diff changeset
1136 "EBF site 529 (partition 1)":1,
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parents:
diff changeset
1137 "EBF site 537 (partition 1)":1,
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iuc
parents:
diff changeset
1138 "EBF site 539 (partition 1)":1,
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iuc
parents:
diff changeset
1139 "EBF site 545 (partition 1)":1,
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iuc
parents:
diff changeset
1140 "EBF site 549 (partition 1)":1,
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iuc
parents:
diff changeset
1141 "EBF site 553 (partition 1)":1,
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parents: 0
diff changeset
1142 "EBF site 558 (partition 1)":0.9728546440314227,
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iuc
parents:
diff changeset
1143 "EBF site 560 (partition 1)":1,
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parents:
diff changeset
1144 "EBF site 564 (partition 1)":1,
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parents:
diff changeset
1145 "EBF site 58 (partition 1)":1,
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parents:
diff changeset
1146 "EBF site 59 (partition 1)":1,
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parents:
diff changeset
1147 "EBF site 60 (partition 1)":1,
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iuc
parents:
diff changeset
1148 "EBF site 68 (partition 1)":1,
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iuc
parents:
diff changeset
1149 "EBF site 69 (partition 1)":1,
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iuc
parents:
diff changeset
1150 "EBF site 78 (partition 1)":1,
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iuc
parents:
diff changeset
1151 "EBF site 79 (partition 1)":1,
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parents:
diff changeset
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parents:
diff changeset
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iuc
parents:
diff changeset
1154 "EBF site 86 (partition 1)":1,
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iuc
parents:
diff changeset
1155 "EBF site 89 (partition 1)":1,
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iuc
parents: 0
diff changeset
1156 "Global MG94xREV":0.00123629096030503,
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iuc
parents: 0
diff changeset
1157 "Nucleotide GTR":0.00113802520351336
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551616a65f8f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1158 },
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iuc
parents: 0
diff changeset
1159 "Node2":{
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parents:
diff changeset
1160 "EBF site 100 (partition 1)":1,
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parents: 0
diff changeset
1161 "EBF site 102 (partition 1)":0.2983773057734167,
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iuc
parents:
diff changeset
1162 "EBF site 104 (partition 1)":1,
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parents:
diff changeset
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iuc
parents:
diff changeset
1164 "EBF site 112 (partition 1)":1,
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iuc
parents:
diff changeset
1165 "EBF site 113 (partition 1)":1,
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iuc
parents:
diff changeset
1166 "EBF site 117 (partition 1)":1,
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iuc
parents:
diff changeset
1167 "EBF site 12 (partition 1)":1,
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iuc
parents:
diff changeset
1168 "EBF site 136 (partition 1)":1,
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iuc
parents:
diff changeset
1169 "EBF site 140 (partition 1)":1,
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iuc
parents:
diff changeset
1170 "EBF site 142 (partition 1)":1,
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7827dfb71693 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 8d5ae1d04c43988fdcc458f4f08376a15e72db8e"
iuc
parents: 0
diff changeset
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iuc
parents:
diff changeset
1172 "EBF site 146 (partition 1)":1,
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iuc
parents:
diff changeset
1173 "EBF site 152 (partition 1)":1,
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iuc
parents:
diff changeset
1174 "EBF site 153 (partition 1)":1,
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iuc
parents:
diff changeset
1175 "EBF site 154 (partition 1)":1,
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iuc
parents:
diff changeset
1176 "EBF site 155 (partition 1)":1,
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iuc
parents:
diff changeset
1177 "EBF site 156 (partition 1)":1,
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iuc
parents:
diff changeset
1178 "EBF site 157 (partition 1)":1,
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7827dfb71693 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 8d5ae1d04c43988fdcc458f4f08376a15e72db8e"
iuc
parents: 0
diff changeset
1179 "EBF site 16 (partition 1)":0.8081796234647317,
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iuc
parents: 0
diff changeset
1180 "EBF site 167 (partition 1)":0.1892834680846694,
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551616a65f8f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1181 "EBF site 170 (partition 1)":1,
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iuc
parents:
diff changeset
1182 "EBF site 171 (partition 1)":1,
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iuc
parents:
diff changeset
1183 "EBF site 172 (partition 1)":1,
551616a65f8f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1184 "EBF site 175 (partition 1)":1,
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7827dfb71693 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 8d5ae1d04c43988fdcc458f4f08376a15e72db8e"
iuc
parents: 0
diff changeset
1185 "EBF site 178 (partition 1)":0.2328474564642978,
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iuc
parents:
diff changeset
1186 "EBF site 181 (partition 1)":1,
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iuc
parents:
diff changeset
1187 "EBF site 196 (partition 1)":1,
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iuc
parents:
diff changeset
1188 "EBF site 197 (partition 1)":1,
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iuc
parents:
diff changeset
1189 "EBF site 200 (partition 1)":1,
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iuc
parents:
diff changeset
1190 "EBF site 204 (partition 1)":1,
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iuc
parents:
diff changeset
1191 "EBF site 206 (partition 1)":1,
551616a65f8f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1192 "EBF site 209 (partition 1)":1,
551616a65f8f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1193 "EBF site 21 (partition 1)":1,
551616a65f8f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1194 "EBF site 213 (partition 1)":1,
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parents:
diff changeset
1195 "EBF site 217 (partition 1)":1,
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parents:
diff changeset
1196 "EBF site 228 (partition 1)":1,
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parents:
diff changeset
1197 "EBF site 237 (partition 1)":1,
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parents:
diff changeset
1198 "EBF site 241 (partition 1)":1,
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parents:
diff changeset
1199 "EBF site 250 (partition 1)":1,
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parents:
diff changeset
1200 "EBF site 254 (partition 1)":1,
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parents:
diff changeset
1201 "EBF site 256 (partition 1)":1,
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parents:
diff changeset
1202 "EBF site 258 (partition 1)":1,
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parents:
diff changeset
1203 "EBF site 278 (partition 1)":1,
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parents:
diff changeset
1204 "EBF site 279 (partition 1)":1,
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parents:
diff changeset
1205 "EBF site 28 (partition 1)":1,
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parents:
diff changeset
1206 "EBF site 288 (partition 1)":1,
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parents: 0
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1207 "EBF site 298 (partition 1)":0.5700798948217274,
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diff changeset
1208 "EBF site 3 (partition 1)":1,
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parents:
diff changeset
1209 "EBF site 302 (partition 1)":1,
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parents:
diff changeset
1210 "EBF site 304 (partition 1)":1,
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parents:
diff changeset
1211 "EBF site 306 (partition 1)":1,
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parents:
diff changeset
1212 "EBF site 309 (partition 1)":1,
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parents:
diff changeset
1213 "EBF site 312 (partition 1)":1,
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parents:
diff changeset
1214 "EBF site 315 (partition 1)":1,
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iuc
parents:
diff changeset
1215 "EBF site 327 (partition 1)":1,
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parents:
diff changeset
1216 "EBF site 329 (partition 1)":1,
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parents:
diff changeset
1217 "EBF site 332 (partition 1)":1,
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parents: 0
diff changeset
1218 "EBF site 336 (partition 1)":0.04146125283101508,
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parents: 0
diff changeset
1219 "EBF site 341 (partition 1)":0.6522232640329504,
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iuc
parents:
diff changeset
1220 "EBF site 342 (partition 1)":1,
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parents:
diff changeset
1221 "EBF site 348 (partition 1)":1,
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iuc
parents:
diff changeset
1222 "EBF site 351 (partition 1)":1,
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parents:
diff changeset
1223 "EBF site 353 (partition 1)":1,
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parents:
diff changeset
1224 "EBF site 354 (partition 1)":1,
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parents:
diff changeset
1225 "EBF site 361 (partition 1)":1,
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parents:
diff changeset
1226 "EBF site 362 (partition 1)":1,
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parents:
diff changeset
1227 "EBF site 369 (partition 1)":1,
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parents:
diff changeset
1228 "EBF site 379 (partition 1)":1,
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parents:
diff changeset
1229 "EBF site 389 (partition 1)":1,
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parents:
diff changeset
1230 "EBF site 417 (partition 1)":1,
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parents:
diff changeset
1231 "EBF site 424 (partition 1)":1,
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parents:
diff changeset
1232 "EBF site 431 (partition 1)":1,
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parents:
diff changeset
1233 "EBF site 433 (partition 1)":1,
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iuc
parents:
diff changeset
1234 "EBF site 441 (partition 1)":1,
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parents:
diff changeset
1235 "EBF site 445 (partition 1)":1,
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iuc
parents:
diff changeset
1236 "EBF site 45 (partition 1)":1,
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parents:
diff changeset
1237 "EBF site 466 (partition 1)":1,
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iuc
parents:
diff changeset
1238 "EBF site 477 (partition 1)":1,
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iuc
parents:
diff changeset
1239 "EBF site 488 (partition 1)":1,
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iuc
parents:
diff changeset
1240 "EBF site 489 (partition 1)":1,
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iuc
parents:
diff changeset
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iuc
parents:
diff changeset
1242 "EBF site 50 (partition 1)":1,
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7827dfb71693 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 8d5ae1d04c43988fdcc458f4f08376a15e72db8e"
iuc
parents: 0
diff changeset
1243 "EBF site 506 (partition 1)":0.4964107471446499,
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iuc
parents:
diff changeset
1244 "EBF site 509 (partition 1)":1,
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iuc
parents: 0
diff changeset
1245 "EBF site 515 (partition 1)":0.1495191727199686,
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iuc
parents:
diff changeset
1246 "EBF site 52 (partition 1)":1,
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iuc
parents:
diff changeset
1247 "EBF site 527 (partition 1)":1,
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iuc
parents:
diff changeset
1248 "EBF site 529 (partition 1)":1,
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iuc
parents:
diff changeset
1249 "EBF site 537 (partition 1)":1,
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iuc
parents:
diff changeset
1250 "EBF site 539 (partition 1)":1,
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iuc
parents:
diff changeset
1251 "EBF site 545 (partition 1)":1,
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iuc
parents:
diff changeset
1252 "EBF site 549 (partition 1)":1,
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iuc
parents:
diff changeset
1253 "EBF site 553 (partition 1)":1,
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7827dfb71693 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 8d5ae1d04c43988fdcc458f4f08376a15e72db8e"
iuc
parents: 0
diff changeset
1254 "EBF site 558 (partition 1)":0.6259225541498677,
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iuc
parents:
diff changeset
1255 "EBF site 560 (partition 1)":1,
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iuc
parents:
diff changeset
1256 "EBF site 564 (partition 1)":1,
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iuc
parents:
diff changeset
1257 "EBF site 58 (partition 1)":1,
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iuc
parents:
diff changeset
1258 "EBF site 59 (partition 1)":1,
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iuc
parents:
diff changeset
1259 "EBF site 60 (partition 1)":1,
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iuc
parents:
diff changeset
1260 "EBF site 68 (partition 1)":1,
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iuc
parents:
diff changeset
1261 "EBF site 69 (partition 1)":1,
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parents:
diff changeset
1262 "EBF site 78 (partition 1)":1,
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iuc
parents:
diff changeset
1263 "EBF site 79 (partition 1)":1,
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iuc
parents:
diff changeset
1264 "EBF site 8 (partition 1)":1,
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parents:
diff changeset
1265 "EBF site 84 (partition 1)":1,
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iuc
parents:
diff changeset
1266 "EBF site 86 (partition 1)":1,
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iuc
parents:
diff changeset
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parents: 0
diff changeset
1268 "Global MG94xREV":0.01343311691788217,
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iuc
parents: 0
diff changeset
1269 "Nucleotide GTR":0.01305159279939348
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parents:
diff changeset
1270 },
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parents: 0
diff changeset
1271 "Node3":{
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parents:
diff changeset
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parents: 0
diff changeset
1273 "EBF site 102 (partition 1)":0.4649111682924234,
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iuc
parents:
diff changeset
1274 "EBF site 104 (partition 1)":1,
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parents:
diff changeset
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parents:
diff changeset
1276 "EBF site 112 (partition 1)":1,
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iuc
parents:
diff changeset
1277 "EBF site 113 (partition 1)":1,
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parents:
diff changeset
1278 "EBF site 117 (partition 1)":1,
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diff changeset
1279 "EBF site 12 (partition 1)":1,
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parents:
diff changeset
1280 "EBF site 136 (partition 1)":1,
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parents:
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1281 "EBF site 140 (partition 1)":1,
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parents:
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1282 "EBF site 142 (partition 1)":1,
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parents: 0
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parents:
diff changeset
1284 "EBF site 146 (partition 1)":1,
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parents:
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parents:
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parents: 0
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parents:
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parents:
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parents:
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parents: 0
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parents: 0
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1292 "EBF site 167 (partition 1)":0.3407338226169454,
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parents:
diff changeset
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parents:
diff changeset
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parents:
diff changeset
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parents: 0
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parents:
diff changeset
1298 "EBF site 181 (partition 1)":1,
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parents:
diff changeset
1299 "EBF site 196 (partition 1)":1,
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parents:
diff changeset
1300 "EBF site 197 (partition 1)":1,
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parents:
diff changeset
1301 "EBF site 200 (partition 1)":1,
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parents:
diff changeset
1302 "EBF site 204 (partition 1)":1,
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parents:
diff changeset
1303 "EBF site 206 (partition 1)":1,
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parents:
diff changeset
1304 "EBF site 209 (partition 1)":1,
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parents:
diff changeset
1305 "EBF site 21 (partition 1)":1,
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parents:
diff changeset
1306 "EBF site 213 (partition 1)":1,
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parents:
diff changeset
1307 "EBF site 217 (partition 1)":1,
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parents:
diff changeset
1308 "EBF site 228 (partition 1)":1,
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parents:
diff changeset
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parents:
diff changeset
1310 "EBF site 241 (partition 1)":1,
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parents:
diff changeset
1311 "EBF site 250 (partition 1)":1,
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parents:
diff changeset
1312 "EBF site 254 (partition 1)":1,
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parents:
diff changeset
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parents:
diff changeset
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parents:
diff changeset
1315 "EBF site 278 (partition 1)":1,
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parents:
diff changeset
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parents:
diff changeset
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parents:
diff changeset
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parents: 0
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1319 "EBF site 298 (partition 1)":0.9266880063632672,
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diff changeset
1320 "EBF site 3 (partition 1)":1,
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parents:
diff changeset
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parents:
diff changeset
1322 "EBF site 304 (partition 1)":1,
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parents:
diff changeset
1323 "EBF site 306 (partition 1)":1,
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parents:
diff changeset
1324 "EBF site 309 (partition 1)":1,
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parents:
diff changeset
1325 "EBF site 312 (partition 1)":1,
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parents:
diff changeset
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parents:
diff changeset
1327 "EBF site 327 (partition 1)":1,
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parents:
diff changeset
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iuc
parents:
diff changeset
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parents: 0
diff changeset
1330 "EBF site 336 (partition 1)":5.529638339483919,
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1331 "EBF site 341 (partition 1)":1.478556710666465,
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551616a65f8f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
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parents:
diff changeset
1332 "EBF site 342 (partition 1)":1,
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parents:
diff changeset
1333 "EBF site 348 (partition 1)":1,
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iuc
parents:
diff changeset
1334 "EBF site 351 (partition 1)":1,
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parents:
diff changeset
1335 "EBF site 353 (partition 1)":1,
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iuc
parents:
diff changeset
1336 "EBF site 354 (partition 1)":1,
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iuc
parents:
diff changeset
1337 "EBF site 361 (partition 1)":1,
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iuc
parents:
diff changeset
1338 "EBF site 362 (partition 1)":1,
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iuc
parents:
diff changeset
1339 "EBF site 369 (partition 1)":1,
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iuc
parents:
diff changeset
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diff changeset
1341 "EBF site 389 (partition 1)":1,
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iuc
parents:
diff changeset
1342 "EBF site 417 (partition 1)":1,
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iuc
parents:
diff changeset
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iuc
parents:
diff changeset
1344 "EBF site 431 (partition 1)":1,
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iuc
parents:
diff changeset
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iuc
parents:
diff changeset
1346 "EBF site 441 (partition 1)":1,
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iuc
parents:
diff changeset
1347 "EBF site 445 (partition 1)":1,
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iuc
parents:
diff changeset
1348 "EBF site 45 (partition 1)":1,
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iuc
parents:
diff changeset
1349 "EBF site 466 (partition 1)":1,
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iuc
parents:
diff changeset
1350 "EBF site 477 (partition 1)":1,
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iuc
parents:
diff changeset
1351 "EBF site 488 (partition 1)":1,
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iuc
parents:
diff changeset
1352 "EBF site 489 (partition 1)":1,
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iuc
parents:
diff changeset
1353 "EBF site 499 (partition 1)":1,
551616a65f8f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1354 "EBF site 50 (partition 1)":1,
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7827dfb71693 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 8d5ae1d04c43988fdcc458f4f08376a15e72db8e"
iuc
parents: 0
diff changeset
1355 "EBF site 506 (partition 1)":0.797370450991247,
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551616a65f8f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1356 "EBF site 509 (partition 1)":1,
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7827dfb71693 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 8d5ae1d04c43988fdcc458f4f08376a15e72db8e"
iuc
parents: 0
diff changeset
1357 "EBF site 515 (partition 1)":4.860504839665532,
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551616a65f8f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1358 "EBF site 52 (partition 1)":1,
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iuc
parents:
diff changeset
1359 "EBF site 527 (partition 1)":1,
551616a65f8f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1360 "EBF site 529 (partition 1)":1,
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parents:
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1361 "EBF site 537 (partition 1)":1,
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1367 "EBF site 560 (partition 1)":1,
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1371 "EBF site 60 (partition 1)":1,
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parents:
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parents: 0
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parents:
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1382 },
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1383 "Node4":{
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parents:
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parents:
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parents:
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parents: 0
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parents:
diff changeset
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parents:
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parents:
diff changeset
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parents:
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diff changeset
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1413 "EBF site 200 (partition 1)":1,
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diff changeset
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1415 "EBF site 206 (partition 1)":1,
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diff changeset
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diff changeset
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iuc
parents:
diff changeset
1418 "EBF site 213 (partition 1)":1,
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iuc
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diff changeset
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diff changeset
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1423 "EBF site 250 (partition 1)":1,
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1425 "EBF site 256 (partition 1)":1,
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parents:
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1431 "EBF site 298 (partition 1)":0.9527852710015089,
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1433 "EBF site 302 (partition 1)":1,
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1434 "EBF site 304 (partition 1)":1,
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parents:
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1435 "EBF site 306 (partition 1)":1,
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1436 "EBF site 309 (partition 1)":1,
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1437 "EBF site 312 (partition 1)":1,
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parents:
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parents:
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1439 "EBF site 327 (partition 1)":1,
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parents:
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parents:
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parents: 0
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1442 "EBF site 336 (partition 1)":5.290467092534611,
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parents: 0
diff changeset
1443 "EBF site 341 (partition 1)":1.285390935922993,
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iuc
parents:
diff changeset
1444 "EBF site 342 (partition 1)":1,
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parents:
diff changeset
1445 "EBF site 348 (partition 1)":1,
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parents:
diff changeset
1446 "EBF site 351 (partition 1)":1,
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parents:
diff changeset
1447 "EBF site 353 (partition 1)":1,
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parents:
diff changeset
1448 "EBF site 354 (partition 1)":1,
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parents:
diff changeset
1449 "EBF site 361 (partition 1)":1,
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parents:
diff changeset
1450 "EBF site 362 (partition 1)":1,
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diff changeset
1451 "EBF site 369 (partition 1)":1,
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diff changeset
1452 "EBF site 379 (partition 1)":1,
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diff changeset
1453 "EBF site 389 (partition 1)":1,
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parents:
diff changeset
1454 "EBF site 417 (partition 1)":1,
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diff changeset
1455 "EBF site 424 (partition 1)":1,
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parents:
diff changeset
1456 "EBF site 431 (partition 1)":1,
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parents:
diff changeset
1457 "EBF site 433 (partition 1)":1,
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parents:
diff changeset
1458 "EBF site 441 (partition 1)":1,
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parents:
diff changeset
1459 "EBF site 445 (partition 1)":1,
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parents:
diff changeset
1460 "EBF site 45 (partition 1)":1,
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parents:
diff changeset
1461 "EBF site 466 (partition 1)":1,
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parents:
diff changeset
1462 "EBF site 477 (partition 1)":1,
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parents:
diff changeset
1463 "EBF site 488 (partition 1)":1,
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parents:
diff changeset
1464 "EBF site 489 (partition 1)":1,
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parents:
diff changeset
1465 "EBF site 499 (partition 1)":1,
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parents:
diff changeset
1466 "EBF site 50 (partition 1)":1,
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parents: 0
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1467 "EBF site 506 (partition 1)":0.865141523379052,
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parents:
diff changeset
1468 "EBF site 509 (partition 1)":1,
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parents: 0
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1469 "EBF site 515 (partition 1)":4.435657228737346,
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parents:
diff changeset
1470 "EBF site 52 (partition 1)":1,
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parents:
diff changeset
1471 "EBF site 527 (partition 1)":1,
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parents:
diff changeset
1472 "EBF site 529 (partition 1)":1,
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parents:
diff changeset
1473 "EBF site 537 (partition 1)":1,
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parents:
diff changeset
1474 "EBF site 539 (partition 1)":1,
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parents:
diff changeset
1475 "EBF site 545 (partition 1)":1,
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iuc
parents:
diff changeset
1476 "EBF site 549 (partition 1)":1,
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iuc
parents:
diff changeset
1477 "EBF site 553 (partition 1)":1,
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parents: 0
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1478 "EBF site 558 (partition 1)":0.8961900178321013,
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parents:
diff changeset
1479 "EBF site 560 (partition 1)":1,
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parents:
diff changeset
1480 "EBF site 564 (partition 1)":1,
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parents:
diff changeset
1481 "EBF site 58 (partition 1)":1,
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parents:
diff changeset
1482 "EBF site 59 (partition 1)":1,
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parents:
diff changeset
1483 "EBF site 60 (partition 1)":1,
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parents:
diff changeset
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parents:
diff changeset
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parents:
diff changeset
1486 "EBF site 78 (partition 1)":1,
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parents:
diff changeset
1487 "EBF site 79 (partition 1)":1,
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parents:
diff changeset
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parents:
diff changeset
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parents:
diff changeset
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iuc
parents:
diff changeset
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iuc
parents: 0
diff changeset
1492 "Global MG94xREV":0.002388729972850264,
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parents: 0
diff changeset
1493 "Nucleotide GTR":0.002273329319054118
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551616a65f8f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1494 },
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parents: 0
diff changeset
1495 "Node5":{
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parents:
diff changeset
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parents: 0
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iuc
parents:
diff changeset
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parents:
diff changeset
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iuc
parents:
diff changeset
1500 "EBF site 112 (partition 1)":1,
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iuc
parents:
diff changeset
1501 "EBF site 113 (partition 1)":1,
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iuc
parents:
diff changeset
1502 "EBF site 117 (partition 1)":1,
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iuc
parents:
diff changeset
1503 "EBF site 12 (partition 1)":1,
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iuc
parents:
diff changeset
1504 "EBF site 136 (partition 1)":1,
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iuc
parents:
diff changeset
1505 "EBF site 140 (partition 1)":1,
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iuc
parents:
diff changeset
1506 "EBF site 142 (partition 1)":1,
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parents: 0
diff changeset
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iuc
parents:
diff changeset
1508 "EBF site 146 (partition 1)":1,
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parents:
diff changeset
1509 "EBF site 152 (partition 1)":1,
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parents:
diff changeset
1510 "EBF site 153 (partition 1)":1,
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parents: 0
diff changeset
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iuc
parents:
diff changeset
1512 "EBF site 155 (partition 1)":1,
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iuc
parents:
diff changeset
1513 "EBF site 156 (partition 1)":1,
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iuc
parents:
diff changeset
1514 "EBF site 157 (partition 1)":1,
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iuc
parents: 0
diff changeset
1515 "EBF site 16 (partition 1)":0.9911612020516568,
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parents: 0
diff changeset
1516 "EBF site 167 (partition 1)":0.3799511856112101,
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551616a65f8f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1517 "EBF site 170 (partition 1)":1,
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iuc
parents:
diff changeset
1518 "EBF site 171 (partition 1)":1,
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iuc
parents:
diff changeset
1519 "EBF site 172 (partition 1)":1,
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iuc
parents:
diff changeset
1520 "EBF site 175 (partition 1)":1,
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7827dfb71693 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 8d5ae1d04c43988fdcc458f4f08376a15e72db8e"
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parents: 0
diff changeset
1521 "EBF site 178 (partition 1)":0.6670176831386634,
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551616a65f8f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1522 "EBF site 181 (partition 1)":1,
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iuc
parents:
diff changeset
1523 "EBF site 196 (partition 1)":1,
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iuc
parents:
diff changeset
1524 "EBF site 197 (partition 1)":1,
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iuc
parents:
diff changeset
1525 "EBF site 200 (partition 1)":1,
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iuc
parents:
diff changeset
1526 "EBF site 204 (partition 1)":1,
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1527 "EBF site 206 (partition 1)":1,
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1530 "EBF site 213 (partition 1)":1,
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1531 "EBF site 217 (partition 1)":1,
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1532 "EBF site 228 (partition 1)":1,
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diff changeset
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diff changeset
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diff changeset
1605 "Nucleotide GTR":0.00292839032138674
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1606 },
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diff changeset
1607 "Node7":{
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parents:
diff changeset
1610 "EBF site 104 (partition 1)":1,
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diff changeset
1611 "EBF site 11 (partition 1)":1,
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diff changeset
1612 "EBF site 112 (partition 1)":1,
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diff changeset
1613 "EBF site 113 (partition 1)":1,
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diff changeset
1614 "EBF site 117 (partition 1)":1,
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1615 "EBF site 12 (partition 1)":1,
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1616 "EBF site 136 (partition 1)":1,
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1617 "EBF site 140 (partition 1)":1,
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1618 "EBF site 142 (partition 1)":1,
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parents:
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1620 "EBF site 146 (partition 1)":1,
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parents: 0
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diff changeset
1624 "EBF site 155 (partition 1)":1,
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1625 "EBF site 156 (partition 1)":1,
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1626 "EBF site 157 (partition 1)":1,
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parents: 0
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1627 "EBF site 16 (partition 1)":1.239272886257911,
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parents: 0
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1628 "EBF site 167 (partition 1)":0.4284099680954765,
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parents:
diff changeset
1629 "EBF site 170 (partition 1)":1,
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diff changeset
1630 "EBF site 171 (partition 1)":1,
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diff changeset
1631 "EBF site 172 (partition 1)":1,
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diff changeset
1632 "EBF site 175 (partition 1)":1,
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parents: 0
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1633 "EBF site 178 (partition 1)":0.7288450340523854,
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parents:
diff changeset
1634 "EBF site 181 (partition 1)":1,
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diff changeset
1635 "EBF site 196 (partition 1)":1,
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diff changeset
1636 "EBF site 197 (partition 1)":1,
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diff changeset
1637 "EBF site 200 (partition 1)":1,
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diff changeset
1638 "EBF site 204 (partition 1)":1,
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diff changeset
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diff changeset
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diff changeset
1641 "EBF site 21 (partition 1)":1,
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parents:
diff changeset
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diff changeset
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diff changeset
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diff changeset
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diff changeset
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diff changeset
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diff changeset
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diff changeset
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diff changeset
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diff changeset
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diff changeset
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1664 "EBF site 329 (partition 1)":1,
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diff changeset
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1667 "EBF site 341 (partition 1)":0.8606537821635127,
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diff changeset
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diff changeset
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iuc
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diff changeset
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diff changeset
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diff changeset
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parents:
diff changeset
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diff changeset
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diff changeset
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iuc
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diff changeset
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iuc
parents:
diff changeset
1685 "EBF site 466 (partition 1)":1,
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iuc
parents:
diff changeset
1686 "EBF site 477 (partition 1)":1,
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iuc
parents:
diff changeset
1687 "EBF site 488 (partition 1)":1,
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iuc
parents:
diff changeset
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iuc
parents:
diff changeset
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iuc
parents:
diff changeset
1690 "EBF site 50 (partition 1)":1,
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7827dfb71693 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 8d5ae1d04c43988fdcc458f4f08376a15e72db8e"
iuc
parents: 0
diff changeset
1691 "EBF site 506 (partition 1)":0.8296278429156358,
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551616a65f8f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
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1718 },
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1719 "Node9":{
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1771 "EBF site 306 (partition 1)":1,
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diff changeset
1775 "EBF site 327 (partition 1)":1,
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iuc
parents:
diff changeset
1776 "EBF site 329 (partition 1)":1,
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iuc
parents:
diff changeset
1777 "EBF site 332 (partition 1)":1,
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iuc
parents: 0
diff changeset
1778 "EBF site 336 (partition 1)":0.05337910105382759,
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iuc
parents: 0
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1779 "EBF site 341 (partition 1)":0.8081994197048832,
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iuc
parents:
diff changeset
1780 "EBF site 342 (partition 1)":1,
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parents:
diff changeset
1781 "EBF site 348 (partition 1)":1,
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iuc
parents:
diff changeset
1782 "EBF site 351 (partition 1)":1,
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parents:
diff changeset
1783 "EBF site 353 (partition 1)":1,
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parents:
diff changeset
1784 "EBF site 354 (partition 1)":1,
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parents:
diff changeset
1785 "EBF site 361 (partition 1)":1,
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parents:
diff changeset
1786 "EBF site 362 (partition 1)":1,
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parents:
diff changeset
1787 "EBF site 369 (partition 1)":1,
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parents:
diff changeset
1788 "EBF site 379 (partition 1)":1,
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parents:
diff changeset
1789 "EBF site 389 (partition 1)":1,
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parents:
diff changeset
1790 "EBF site 417 (partition 1)":1,
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parents:
diff changeset
1791 "EBF site 424 (partition 1)":1,
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parents:
diff changeset
1792 "EBF site 431 (partition 1)":1,
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parents:
diff changeset
1793 "EBF site 433 (partition 1)":1,
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iuc
parents:
diff changeset
1794 "EBF site 441 (partition 1)":1,
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iuc
parents:
diff changeset
1795 "EBF site 445 (partition 1)":1,
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parents:
diff changeset
1796 "EBF site 45 (partition 1)":1,
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iuc
parents:
diff changeset
1797 "EBF site 466 (partition 1)":1,
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iuc
parents:
diff changeset
1798 "EBF site 477 (partition 1)":1,
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iuc
parents:
diff changeset
1799 "EBF site 488 (partition 1)":1,
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iuc
parents:
diff changeset
1800 "EBF site 489 (partition 1)":1,
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iuc
parents:
diff changeset
1801 "EBF site 499 (partition 1)":1,
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iuc
parents:
diff changeset
1802 "EBF site 50 (partition 1)":1,
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iuc
parents: 0
diff changeset
1803 "EBF site 506 (partition 1)":3.467552400984787,
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iuc
parents:
diff changeset
1804 "EBF site 509 (partition 1)":1,
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iuc
parents: 0
diff changeset
1805 "EBF site 515 (partition 1)":0.2256255056809444,
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iuc
parents:
diff changeset
1806 "EBF site 52 (partition 1)":1,
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iuc
parents:
diff changeset
1807 "EBF site 527 (partition 1)":1,
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iuc
parents:
diff changeset
1808 "EBF site 529 (partition 1)":1,
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iuc
parents:
diff changeset
1809 "EBF site 537 (partition 1)":1,
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iuc
parents:
diff changeset
1810 "EBF site 539 (partition 1)":1,
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iuc
parents:
diff changeset
1811 "EBF site 545 (partition 1)":1,
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iuc
parents:
diff changeset
1812 "EBF site 549 (partition 1)":1,
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iuc
parents:
diff changeset
1813 "EBF site 553 (partition 1)":1,
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iuc
parents: 0
diff changeset
1814 "EBF site 558 (partition 1)":0.8118282720843134,
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iuc
parents:
diff changeset
1815 "EBF site 560 (partition 1)":1,
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iuc
parents:
diff changeset
1816 "EBF site 564 (partition 1)":1,
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iuc
parents:
diff changeset
1817 "EBF site 58 (partition 1)":1,
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iuc
parents:
diff changeset
1818 "EBF site 59 (partition 1)":1,
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iuc
parents:
diff changeset
1819 "EBF site 60 (partition 1)":1,
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iuc
parents:
diff changeset
1820 "EBF site 68 (partition 1)":1,
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iuc
parents:
diff changeset
1821 "EBF site 69 (partition 1)":1,
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iuc
parents:
diff changeset
1822 "EBF site 78 (partition 1)":1,
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iuc
parents:
diff changeset
1823 "EBF site 79 (partition 1)":1,
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iuc
parents:
diff changeset
1824 "EBF site 8 (partition 1)":1,
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iuc
parents:
diff changeset
1825 "EBF site 84 (partition 1)":1,
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iuc
parents:
diff changeset
1826 "EBF site 86 (partition 1)":1,
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iuc
parents:
diff changeset
1827 "EBF site 89 (partition 1)":1,
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iuc
parents: 0
diff changeset
1828 "Global MG94xREV":0.004576755835518515,
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iuc
parents: 0
diff changeset
1829 "Nucleotide GTR":0.004637868093937116
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551616a65f8f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1830 },
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7827dfb71693 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 8d5ae1d04c43988fdcc458f4f08376a15e72db8e"
iuc
parents: 0
diff changeset
1831 "SWINE_ANHUI_1_2004":{
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iuc
parents:
diff changeset
1832 "EBF site 100 (partition 1)":1,
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7827dfb71693 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 8d5ae1d04c43988fdcc458f4f08376a15e72db8e"
iuc
parents: 0
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1833 "EBF site 102 (partition 1)":0.1686787772874804,
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iuc
parents:
diff changeset
1834 "EBF site 104 (partition 1)":1,
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iuc
parents:
diff changeset
1835 "EBF site 11 (partition 1)":1,
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iuc
parents:
diff changeset
1836 "EBF site 112 (partition 1)":1,
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iuc
parents:
diff changeset
1837 "EBF site 113 (partition 1)":1,
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iuc
parents:
diff changeset
1838 "EBF site 117 (partition 1)":1,
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iuc
parents:
diff changeset
1839 "EBF site 12 (partition 1)":1,
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iuc
parents:
diff changeset
1840 "EBF site 136 (partition 1)":1,
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iuc
parents:
diff changeset
1841 "EBF site 140 (partition 1)":1,
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iuc
parents:
diff changeset
1842 "EBF site 142 (partition 1)":1,
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7827dfb71693 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 8d5ae1d04c43988fdcc458f4f08376a15e72db8e"
iuc
parents: 0
diff changeset
1843 "EBF site 145 (partition 1)":1,
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iuc
parents:
diff changeset
1844 "EBF site 146 (partition 1)":1,
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iuc
parents:
diff changeset
1845 "EBF site 152 (partition 1)":1,
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iuc
parents:
diff changeset
1846 "EBF site 153 (partition 1)":1,
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7827dfb71693 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 8d5ae1d04c43988fdcc458f4f08376a15e72db8e"
iuc
parents: 0
diff changeset
1847 "EBF site 154 (partition 1)":1,
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iuc
parents:
diff changeset
1848 "EBF site 155 (partition 1)":1,
551616a65f8f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1849 "EBF site 156 (partition 1)":1,
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iuc
parents:
diff changeset
1850 "EBF site 157 (partition 1)":1,
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7827dfb71693 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 8d5ae1d04c43988fdcc458f4f08376a15e72db8e"
iuc
parents: 0
diff changeset
1851 "EBF site 16 (partition 1)":2.825233043426132,
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iuc
parents: 0
diff changeset
1852 "EBF site 167 (partition 1)":0.1907402925694587,
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551616a65f8f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1853 "EBF site 170 (partition 1)":1,
551616a65f8f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1854 "EBF site 171 (partition 1)":1,
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iuc
parents:
diff changeset
1855 "EBF site 172 (partition 1)":1,
551616a65f8f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1856 "EBF site 175 (partition 1)":1,
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7827dfb71693 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 8d5ae1d04c43988fdcc458f4f08376a15e72db8e"
iuc
parents: 0
diff changeset
1857 "EBF site 178 (partition 1)":0.4083265150097887,
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551616a65f8f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1858 "EBF site 181 (partition 1)":1,
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diff changeset
1859 "EBF site 196 (partition 1)":1,
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1860 "EBF site 197 (partition 1)":1,
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1861 "EBF site 200 (partition 1)":1,
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1862 "EBF site 204 (partition 1)":1,
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1863 "EBF site 206 (partition 1)":1,
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1864 "EBF site 209 (partition 1)":1,
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1865 "EBF site 21 (partition 1)":1,
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1866 "EBF site 213 (partition 1)":1,
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1867 "EBF site 217 (partition 1)":1,
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diff changeset
1868 "EBF site 228 (partition 1)":1,
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1869 "EBF site 237 (partition 1)":1,
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diff changeset
1870 "EBF site 241 (partition 1)":1,
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1871 "EBF site 250 (partition 1)":1,
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1872 "EBF site 254 (partition 1)":1,
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diff changeset
1873 "EBF site 256 (partition 1)":1,
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1874 "EBF site 258 (partition 1)":1,
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diff changeset
1875 "EBF site 278 (partition 1)":1,
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parents:
diff changeset
1876 "EBF site 279 (partition 1)":1,
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parents:
diff changeset
1877 "EBF site 28 (partition 1)":1,
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parents:
diff changeset
1878 "EBF site 288 (partition 1)":1,
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parents: 0
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1879 "EBF site 298 (partition 1)":5.455221220186101,
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1880 "EBF site 3 (partition 1)":1,
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parents:
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1881 "EBF site 302 (partition 1)":1,
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1882 "EBF site 304 (partition 1)":1,
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parents:
diff changeset
1883 "EBF site 306 (partition 1)":1,
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parents:
diff changeset
1884 "EBF site 309 (partition 1)":1,
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diff changeset
1885 "EBF site 312 (partition 1)":1,
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parents:
diff changeset
1886 "EBF site 315 (partition 1)":1,
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parents:
diff changeset
1887 "EBF site 327 (partition 1)":1,
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diff changeset
1888 "EBF site 329 (partition 1)":1,
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parents:
diff changeset
1889 "EBF site 332 (partition 1)":1,
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1891 "EBF site 341 (partition 1)":0.6235724116699242,
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parents:
diff changeset
1892 "EBF site 342 (partition 1)":1,
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parents:
diff changeset
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diff changeset
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diff changeset
1895 "EBF site 353 (partition 1)":1,
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diff changeset
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diff changeset
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parents:
diff changeset
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parents:
diff changeset
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parents:
diff changeset
1900 "EBF site 379 (partition 1)":1,
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diff changeset
1901 "EBF site 389 (partition 1)":1,
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iuc
parents:
diff changeset
1902 "EBF site 417 (partition 1)":1,
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diff changeset
1903 "EBF site 424 (partition 1)":1,
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parents:
diff changeset
1904 "EBF site 431 (partition 1)":1,
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diff changeset
1905 "EBF site 433 (partition 1)":1,
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diff changeset
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diff changeset
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diff changeset
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diff changeset
1909 "EBF site 466 (partition 1)":1,
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diff changeset
1910 "EBF site 477 (partition 1)":1,
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diff changeset
1911 "EBF site 488 (partition 1)":1,
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diff changeset
1912 "EBF site 489 (partition 1)":1,
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iuc
parents:
diff changeset
1913 "EBF site 499 (partition 1)":1,
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iuc
parents:
diff changeset
1914 "EBF site 50 (partition 1)":1,
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parents: 0
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1915 "EBF site 506 (partition 1)":0.5589771102055697,
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parents:
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1916 "EBF site 509 (partition 1)":1,
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parents: 0
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1917 "EBF site 515 (partition 1)":0.1243159242286358,
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iuc
parents:
diff changeset
1918 "EBF site 52 (partition 1)":1,
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iuc
parents:
diff changeset
1919 "EBF site 527 (partition 1)":1,
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iuc
parents:
diff changeset
1920 "EBF site 529 (partition 1)":1,
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iuc
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diff changeset
1921 "EBF site 537 (partition 1)":1,
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iuc
parents:
diff changeset
1922 "EBF site 539 (partition 1)":1,
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parents:
diff changeset
1923 "EBF site 545 (partition 1)":1,
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iuc
parents:
diff changeset
1924 "EBF site 549 (partition 1)":1,
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iuc
parents:
diff changeset
1925 "EBF site 553 (partition 1)":1,
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iuc
parents: 0
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1926 "EBF site 558 (partition 1)":0.6961922557341373,
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iuc
parents:
diff changeset
1927 "EBF site 560 (partition 1)":1,
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iuc
parents:
diff changeset
1928 "EBF site 564 (partition 1)":1,
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parents:
diff changeset
1929 "EBF site 58 (partition 1)":1,
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iuc
parents:
diff changeset
1930 "EBF site 59 (partition 1)":1,
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iuc
parents:
diff changeset
1931 "EBF site 60 (partition 1)":1,
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1932 "EBF site 68 (partition 1)":1,
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parents:
diff changeset
1933 "EBF site 69 (partition 1)":1,
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parents:
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1934 "EBF site 78 (partition 1)":1,
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iuc
parents:
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1935 "EBF site 79 (partition 1)":1,
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parents:
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1936 "EBF site 8 (partition 1)":1,
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iuc
parents:
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1937 "EBF site 84 (partition 1)":1,
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iuc
parents:
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1938 "EBF site 86 (partition 1)":1,
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iuc
parents:
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1939 "EBF site 89 (partition 1)":1,
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parents: 0
diff changeset
1940 "Global MG94xREV":0.007944352318354534,
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iuc
parents: 0
diff changeset
1941 "Nucleotide GTR":0.00775874788653539,
0
551616a65f8f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1942 "original name":"SWINE_ANHUI_1_2004"
551616a65f8f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1943 }
551616a65f8f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1944 },
551616a65f8f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1945 "attributes":{
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iuc
parents:
diff changeset
1946 "EBF site 100 (partition 1)":{
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iuc
parents:
diff changeset
1947 "attribute type":"branch label",
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iuc
parents:
diff changeset
1948 "display order":102
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iuc
parents:
diff changeset
1949 },
551616a65f8f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1950 "EBF site 102 (partition 1)":{
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iuc
parents:
diff changeset
1951 "attribute type":"branch label",
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iuc
parents:
diff changeset
1952 "display order":104
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iuc
parents:
diff changeset
1953 },
551616a65f8f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1954 "EBF site 104 (partition 1)":{
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iuc
parents:
diff changeset
1955 "attribute type":"branch label",
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iuc
parents:
diff changeset
1956 "display order":106
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iuc
parents:
diff changeset
1957 },
551616a65f8f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1958 "EBF site 11 (partition 1)":{
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iuc
parents:
diff changeset
1959 "attribute type":"branch label",
551616a65f8f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1960 "display order":13
551616a65f8f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1961 },
551616a65f8f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1962 "EBF site 112 (partition 1)":{
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iuc
parents:
diff changeset
1963 "attribute type":"branch label",
551616a65f8f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1964 "display order":114
551616a65f8f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1965 },
551616a65f8f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1966 "EBF site 113 (partition 1)":{
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iuc
parents:
diff changeset
1967 "attribute type":"branch label",
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iuc
parents:
diff changeset
1968 "display order":115
551616a65f8f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1969 },
551616a65f8f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1970 "EBF site 117 (partition 1)":{
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iuc
parents:
diff changeset
1971 "attribute type":"branch label",
551616a65f8f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1972 "display order":119
551616a65f8f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1973 },
551616a65f8f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1974 "EBF site 12 (partition 1)":{
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iuc
parents:
diff changeset
1975 "attribute type":"branch label",
551616a65f8f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1976 "display order":14
551616a65f8f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1977 },
551616a65f8f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1978 "EBF site 136 (partition 1)":{
551616a65f8f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1979 "attribute type":"branch label",
551616a65f8f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1980 "display order":138
551616a65f8f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1981 },
551616a65f8f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1982 "EBF site 140 (partition 1)":{
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iuc
parents:
diff changeset
1983 "attribute type":"branch label",
551616a65f8f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1984 "display order":142
551616a65f8f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1985 },
551616a65f8f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1986 "EBF site 142 (partition 1)":{
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iuc
parents:
diff changeset
1987 "attribute type":"branch label",
551616a65f8f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1988 "display order":144
551616a65f8f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1989 },
551616a65f8f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1990 "EBF site 145 (partition 1)":{
551616a65f8f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1991 "attribute type":"branch label",
551616a65f8f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1992 "display order":147
551616a65f8f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1993 },
551616a65f8f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1994 "EBF site 146 (partition 1)":{
551616a65f8f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1995 "attribute type":"branch label",
551616a65f8f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1996 "display order":148
551616a65f8f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1997 },
551616a65f8f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1998 "EBF site 152 (partition 1)":{
551616a65f8f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
1999 "attribute type":"branch label",
551616a65f8f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
2000 "display order":154
551616a65f8f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
2001 },
551616a65f8f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
2002 "EBF site 153 (partition 1)":{
551616a65f8f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
2003 "attribute type":"branch label",
551616a65f8f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
2004 "display order":155
551616a65f8f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
2005 },
551616a65f8f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
2006 "EBF site 154 (partition 1)":{
551616a65f8f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
2007 "attribute type":"branch label",
551616a65f8f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
2008 "display order":156
551616a65f8f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
2009 },
551616a65f8f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
2010 "EBF site 155 (partition 1)":{
551616a65f8f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
2011 "attribute type":"branch label",
551616a65f8f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
2012 "display order":157
551616a65f8f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
2013 },
551616a65f8f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
2014 "EBF site 156 (partition 1)":{
551616a65f8f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
2015 "attribute type":"branch label",
551616a65f8f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
2016 "display order":158
551616a65f8f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
2017 },
551616a65f8f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
2018 "EBF site 157 (partition 1)":{
551616a65f8f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
2019 "attribute type":"branch label",
551616a65f8f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
2020 "display order":159
551616a65f8f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
2021 },
551616a65f8f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
2022 "EBF site 16 (partition 1)":{
551616a65f8f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
2023 "attribute type":"branch label",
551616a65f8f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
2024 "display order":18
551616a65f8f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
2025 },
551616a65f8f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
2026 "EBF site 167 (partition 1)":{
551616a65f8f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
2027 "attribute type":"branch label",
551616a65f8f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
2028 "display order":169
551616a65f8f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
2029 },
551616a65f8f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
2030 "EBF site 170 (partition 1)":{
551616a65f8f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
2031 "attribute type":"branch label",
551616a65f8f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
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2389 }
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diff changeset
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2467 "Rate Distributions":{
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2468 "non-synonymous/synonymous rate ratio for *test*": [
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diff changeset
2469 [0.2932353608697501, 1]
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diff changeset
2470 ]
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2471 },
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2472 "display order":1,
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2473 "estimated parameters":27
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2474 },
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2475 "Nucleotide GTR":{
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2476 "AIC-c":6152.529196194525,
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2477 "Equilibrium frequencies": [
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2478 [0.3478363400542389],
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2479 [0.184883858035609],
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2480 [0.2307510906732697],
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2481 [0.2365287112368824]
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2482 ],
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2483 "Log Likelihood":-3056.215005465311,
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2484 "Rate Distributions":{
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2485 "Substitution rate from nucleotide A to nucleotide C":0.1810796022573985,
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2486 "Substitution rate from nucleotide A to nucleotide G":1,
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2487 "Substitution rate from nucleotide A to nucleotide T":0.08708610799393901,
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2488 "Substitution rate from nucleotide C to nucleotide G":0.02931879134098465,
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2489 "Substitution rate from nucleotide C to nucleotide T":1.419136867291551,
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2490 "Substitution rate from nucleotide G to nucleotide T":0.1065442350926398
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2491 },
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2492 "display order":0,
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2493 "estimated parameters":20
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2494 }
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2495 },
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2496 "input":{
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2497 "file name":"/tmp/tmpdqyv1aux/job_working_directory/000/3/working/./meme_input.fa",
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2498 "number of sequences":5,
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iuc
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diff changeset
2499 "number of sites":566,
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iuc
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diff changeset
2500 "partition count":1,
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iuc
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2501 "trees":{
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iuc
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diff changeset
2502 "0":"(((((CHICKEN_HEBEI_326_2005:0.02100885319673648,(SWINE_ANHUI_1_2004:0.007702393698306516)Node7:0.002095219592954275)Node5:0.003887237703073042)Node4:-1)Node3:0.003130608143291779,(CK_HK_WF157_2003:0.00663129750258774)Node9:0.004655295319725731)Node2:0.0116808817874948,(MALLARD_VIETNAM_16_2003:0.003244216605281072)Node11:0.0004125980823087554,CHICKEN_CK_160_2005:0.006168335080088849)"
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diff changeset
2503 }
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iuc
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diff changeset
2504 },
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iuc
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2505 "tested":{
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iuc
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diff changeset
2506 "0":{
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iuc
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diff changeset
2507 "CHICKEN_CK_160_2005":"test",
551616a65f8f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
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diff changeset
2508 "CHICKEN_HEBEI_326_2005":"test",
551616a65f8f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
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diff changeset
2509 "CK_HK_WF157_2003":"test",
551616a65f8f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
2510 "MALLARD_VIETNAM_16_2003":"test",
551616a65f8f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
2511 "Node11":"test",
551616a65f8f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
2512 "Node2":"test",
551616a65f8f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
2513 "Node3":"test",
551616a65f8f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
2514 "Node4":"test",
551616a65f8f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
2515 "Node5":"test",
551616a65f8f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
2516 "Node7":"test",
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iuc
parents:
diff changeset
2517 "Node9":"test",
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iuc
parents:
diff changeset
2518 "SWINE_ANHUI_1_2004":"test"
551616a65f8f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
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diff changeset
2519 }
551616a65f8f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
parents:
diff changeset
2520 },
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iuc
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diff changeset
2521 "timers":{
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iuc
parents:
diff changeset
2522 "MEME analysis":{
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iuc
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diff changeset
2523 "order":2,
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iuc
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diff changeset
2524 "timer":437
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iuc
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diff changeset
2525 },
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iuc
parents:
diff changeset
2526 "Model fitting":{
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iuc
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diff changeset
2527 "order":1,
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iuc
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diff changeset
2528 "timer":4
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iuc
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diff changeset
2529 },
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iuc
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diff changeset
2530 "Total time":{
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diff changeset
2531 "order":0,
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2532 "timer":442
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diff changeset
2533 }
551616a65f8f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
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diff changeset
2534 }
551616a65f8f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
iuc
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diff changeset
2535 }