Mercurial > repos > iuc > hyphy_relax

comparison hyphy_relax.xml @ 2:8e92afe83af9 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit f14f2bae2b27dc04e574803c7d4442a64cfe43e4"
author iuc
date Fri, 14 Feb 2020 16:45:24 -0500
parents 1da578d6a253
children 134d46bd47dd
comparison
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1:1da578d6a253 2:8e92afe83af9
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool id="hyphy_relax" name="HyPhy-RELAX" version="@VERSION@+galaxy0"> 2 <tool id="hyphy_relax" name="HyPhy-RELAX" version="@VERSION@+galaxy1">
3 <description>Detect relaxed selection in a codon-based 3 <description>Detect relaxed selection in a codon-based
4 phylogenetic framework</description> 4 phylogenetic framework</description>
5 <macros> 5 <macros>
6 <import>macros.xml</import> 6 <import>macros.xml</import>
7 </macros> 7 </macros>
8 <expand macro="requirements"/> 8 <expand macro="requirements"/>
9 <command detect_errors="exit_code"><![CDATA[ 9 <command detect_errors="exit_code"><![CDATA[
10 ln -s '$input_file' relax_input.fa && 10 ln -s '$input_file' relax_input.fa &&
11 ln -s '$input_nhx' relax_input.nhx && 11 ln -s '$input_nhx' relax_input.nhx &&
12 @HYPHY_INVOCATION@ relax 12 hyphy relax
13 --alignment ./relax_input.fa 13 --alignment ./relax_input.fa
14 --tree ./relax_input.nhx 14 --tree ./relax_input.nhx
15 --models '$analysisType' 15 --models '$analysisType'
16 #if $treeAnnotations == "2": 16 #if $treeAnnotations == "2":
17 --test TEST 17 --test TEST