# HG changeset patch
# User iuc
# Date 1581716724 18000
# Node ID 8e92afe83af97f2a88066ca2f4e38df1a9797876
# Parent  1da578d6a25317fa8b788ba5a41a387d7ebc031c
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit f14f2bae2b27dc04e574803c7d4442a64cfe43e4"

diff -r 1da578d6a253 -r 8e92afe83af9 hyphy_relax.xml
--- a/hyphy_relax.xml	Thu Feb 13 15:02:11 2020 -0500
+++ b/hyphy_relax.xml	Fri Feb 14 16:45:24 2020 -0500
@@ -1,5 +1,5 @@
 <?xml version="1.0"?>
-<tool id="hyphy_relax" name="HyPhy-RELAX" version="@VERSION@+galaxy0">
+<tool id="hyphy_relax" name="HyPhy-RELAX" version="@VERSION@+galaxy1">
     <description>Detect relaxed selection in a codon-based
     phylogenetic framework</description>
     <macros>
@@ -9,7 +9,7 @@
     <command detect_errors="exit_code"><![CDATA[
         ln -s '$input_file' relax_input.fa &&
         ln -s '$input_nhx' relax_input.nhx &&
-        @HYPHY_INVOCATION@ relax
+        hyphy relax
             --alignment ./relax_input.fa
             --tree ./relax_input.nhx
             --models '$analysisType'
diff -r 1da578d6a253 -r 8e92afe83af9 macros.xml
--- a/macros.xml	Thu Feb 13 15:02:11 2020 -0500
+++ b/macros.xml	Fri Feb 14 16:45:24 2020 -0500
@@ -80,6 +80,7 @@
             <yield/>
         </requirements>
     </xml>
+    <token name="@HYPHYMPI@">mpirun -np \${GALAXY_SLOTS:-1} HYPHYMPI</token>
     <token name="@HYPHY_ENVIRONMENT@"><![CDATA[export HYPHY=`which hyphy` &&
 export HYPHY_PATH=`dirname \$HYPHY` &&
 export HYPHY_LIB=`readlink -f \$HYPHY_PATH/../lib/hyphy` &&]]></token>