Mercurial > repos > iuc > hyphy_slac

comparison hyphy_slac.xml @ 2:a603e2f909e5 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 533e8f97b4df382944ac8a31d98e04c9efeb6798"
author iuc
date Thu, 13 Feb 2020 15:03:50 -0500
parents c2bed8cc8fc1
children 242ed2357a01
comparison
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1:c2bed8cc8fc1 2:a603e2f909e5
35 <output name="slac_output" file="slac-out1.json" compare="sim_size"/> 35 <output name="slac_output" file="slac-out1.json" compare="sim_size"/>
36 </test> 36 </test>
37 </tests> 37 </tests>
38 <help><![CDATA[ 38 <help><![CDATA[
39 SLAC (Single-Likelihood Ancestor Counting) uses a combination of maximum-likelihood and counting approaches to infer nonsynonymous and synonymous substitution rates on a per-site basis for a given coding alignment and corresponding phylogeny. SLAC assumes that the selection pressure for each site is constant along the entire phylogeny. 39 SLAC (Single-Likelihood Ancestor Counting) uses a combination of maximum-likelihood and counting approaches to infer nonsynonymous and synonymous substitution rates on a per-site basis for a given coding alignment and corresponding phylogeny. SLAC assumes that the selection pressure for each site is constant along the entire phylogeny.
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41 See the online documentation_ for more information.
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43 .. _documentation: http://hyphy.org/methods/selection-methods/#slac
40 ]]></help> 44 ]]></help>
41 <expand macro="citations"> 45 <expand macro="citations">
42 <citation type="doi">10.1093/molbev/msi105</citation> 46 <citation type="doi">10.1093/molbev/msi105</citation>
43 </expand> 47 </expand>
44 </tool> 48 </tool>