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comparison test-data/gard-out1.json @ 1:c2bed8cc8fc1 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2c7a7ff8a55e7584e84335baa3159a63ce7a590c"
author iuc
date Wed, 21 Aug 2019 12:27:21 -0400
parents
children 0c6724c345d9
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0:9da003917dcb 1:c2bed8cc8fc1
1 {
2 "analysis":{
3 "authors":"Sergei L Kosakovsky Pond",
4 "citation":"**Automated Phylogenetic Detection of Recombination Using a Genetic Algorithm**, _Mol Biol Evol 23(10), 1891–1901",
5 "contact":"spond@temple.edu",
6 "info":"GARD : Genetic Algorithms for Recombination Detection. Implements a heuristic\n approach to screening alignments of sequences for recombination, by using the CHC genetic algorithm to search for phylogenetic\n incongruence among different partitions of the data. The number of partitions is determined using a step-up procedure, while the\n placement of breakpoints is searched for with the GA. The best fitting model (based on c-AIC) is returned; and additional post-hoc\n tests run to distinguish topological incongruence from rate-variation.",
7 "requirements":"A sequence alignment.",
8 "version":"0.1"
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