diff test-data/busted-out1.json @ 26:0c6724c345d9 draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 3908306ffa6f6cbc7b83303b2d4c581406d2fad9"
author iuc
date Tue, 27 Apr 2021 18:00:01 +0000
parents a603e2f909e5
children
line wrap: on
line diff
--- a/test-data/busted-out1.json	Tue Apr 20 19:52:29 2021 +0000
+++ b/test-data/busted-out1.json	Tue Apr 27 18:00:01 2021 +0000
@@ -1,73 +1,73 @@
 {
  "Evidence Ratios":{
    "constrained":    [
-[1.766356514902524, 0.9484374805763239, 0.9571091930814299, 1.845676838710576, 1.513819401189324, 2.11256226458989, 7.366103227625151, 3.937756516229049, 2.586067836907899, 0.722379841928909, 0.3151239046214458, 1.502917468627881, 0.6499879033472316, 1.047489715978757, 1.060206108705189, 0.5038296392390414, 0.8532658611088545, 1.114374823999701, 0.5611409841208096, 0.6702870396165613, 0.4604115167079821, 0.3988433224622866, 2.47019807349414, 0.9858342091732886, 1.106653406611749, 1.067348070135177, 1.77412165088655, 1.321424873505688, 1.90457149631063, 0.7888758683589224, 0.7229203540914775, 0.8813401886687667, 0.6954297746421804, 4.613654710605887, 0.4975309466317643, 1.84565076502724, 0.6214894235132998, 0.9480915704528677, 0.9669462933548731, 1.488081789562878, 1.368539685217942, 1.726522735566884, 1.222915324989829, 0.7085094082639855, 0.3168181005885327, 2.290014391709923, 0.6343005734674315, 0.8841633809961478, 1.508078414734822, 2.666352901083321, 1.732923983135172, 3.102011384229053, 1.585109653073893, 3.345181824497555, 7.193115253213268, 3.850321954428519, 3.233128500312913, 1.977820966308441, 2.047653340750355, 0.6643430465826362, 3.624272911205855, 1.67814994913239, 1.752817561416471, 3.277248182160172, 0.3406457937754578, 0.4841828665456315, 1.399775481724447, 0.5510187898414104, 0.6276769404480749, 0.4535822272441153, 0.4226923979745105, 2.950051361271033, 0.9999999999999982, 1.027733519332009, 2.963278030618241, 2.8935730521221, 1.881916301985038, 0.4490192221083247, 3.102588216900087, 0.7028469232610687, 2.792137897266834, 0.3889955246330017, 0.9360790804326219, 0.4572233386404743, 2.908919410553763, 0.8995968442944373, 0.3261344314757346, 1.080257865601265, 1.399763176607792, 1.534646955858424, 0.4277164444783946, 2.361993404905034, 2.175584822495568, 3.122529901767528, 0.4453847841440882, 1.711825080925545, 0.8458710509917922, 2.741896592382772, 0.576439632416141, 1.142294357680513, 0.8086330800808955, 2.943414796294152, 0.833291758377592, 1.615921141634484, 0.7252129604805458, 2.833655116179036, 0.9138779988368123, 0.6174720822006171, 1.834532902825704, 0.2316812685220093, 2.479235579982967, 0.4643862206171616, 6.530720225707355, 0.4975309466317643, 1.158125132567293, 0.2987944638927862, 3.78696693228073, 0.7343025200073082, 1.93339742618843, 0.3642707474760721, 1.028034824972818, 1.511057897004292, 0.2969890376651506, 0.987605711796378, 0.3709886418939366, 4.185741574214752, 3.002372601666337, 0.424383367760914, 0.4658081554322532, 0.4024556436060775, 2.540164510486854, 0.5199349857684811, 0.4626485320487528, 0.9349816613814522, 0.5525607476128181, 0.5855612460554309, 1.85872747574379, 1.064964125964651, 3.177687923317396, 2.593304657270028, 5.234187858164534, 2.966427299030309, 1.920561682721974, 2.245869881969924, 3.811870935099101, 2.099654636695842, 3.369504334172069, 0.6379165155453101, 3.119867019567397, 0.9211859677702382, 2.195241379859611, 1.767535349740496, 1.225677095999665, 1.347676192394215, 1.671173168407676, 1.179430472478473, 1.873629958128968, 1.972321068578892, 1.863249013159319, 1.501711930393218, 2.85458165498371, 0.5332817404709185, 0.7514817421990073, 0.2887801591578705, 1.93925520496415, 0.2163710715496819, 2.457406602553581, 0.4895227461773333, 2.731573653164397, 0.8923840424261161, 0.6288736610053396, 3.562511382204229, 0.8043427141817341, 2.97831687935463, 3.021636055180988, 1.919432168129229, 1.231674183402057, 3.382911261347008, 1.455440822286478, 1.714894279904311, 0.4763853457361669, 0.907985271671091, 0.9191891327337078, 0.8704988461364657, 0.4660185191281315, 0.6176233729242167, 0.9987767701341157] 
+[1.751697313438667, 0.9490151622254345, 0.9575938099872893, 1.827482077500528, 1.505094606485015, 2.088346790071941, 7.070051504373732, 3.867967952992799, 2.545750919582881, 0.7247660693488289, 0.3196737937441124, 1.489449650902744, 0.6530151351740718, 1.04337285373284, 1.058333334239147, 0.5088801718500566, 0.8550055907613735, 1.110381942461004, 0.565683766000719, 0.6740763008813015, 0.4649952970969699, 0.4036426325687712, 2.442336342315371, 0.9859501295040206, 1.104892115806872, 1.062417300927637, 1.753888646580218, 1.31233150141181, 1.885518048500539, 0.7894296553774935, 0.723576644239061, 0.8827532839004689, 0.6984548336173313, 4.520258616283331, 0.501963856483453, 1.807812329244406, 0.6240669422720765, 0.9486848826066486, 0.9673516986934556, 1.479968294590536, 1.364799619489093, 1.709865961585205, 1.218557239747954, 0.7108467425303473, 0.3215450048962207, 2.271412336163041, 0.6355183534074139, 0.8839058954441763, 1.497501825835906, 2.637709102972778, 1.711470421506773, 3.027431470913309, 1.57278424917318, 3.277990564747366, 6.926286311855851, 3.784092751645639, 3.146955337815139, 1.955427417762355, 2.022694964562529, 0.666396825353515, 3.560060598929708, 1.666971860419219, 1.738637096007019, 3.220829375167113, 0.3447106216301303, 0.4881402535027675, 1.387141991322175, 0.5556476307196163, 0.6310295884570762, 0.4580705327203016, 0.4272583872429177, 2.901848650844198, 0.9999999999999991, 1.027519028508734, 2.915165037860989, 2.8354880840935, 1.858569677080054, 0.4521292148676688, 3.009136246768449, 0.705314987368983, 2.743480940643173, 0.3932432097494273, 0.9370673501878248, 0.4620247121091633, 2.83829096947346, 0.9007779218604833, 0.3302046680129435, 1.07627096358673, 1.391320542790854, 1.521972158264955, 0.4323783230969274, 2.334048026570822, 2.149795581008433, 3.074008352247498, 0.4499660997382409, 1.699461664815503, 0.8463586773204229, 2.696688856522739, 0.5804226171984278, 1.135876829610681, 0.8103519829402507, 2.896966803514224, 0.8351241901463535, 1.602690102144888, 0.7282588483860968, 2.78698806913424, 0.9149220061406503, 0.6214951247464974, 1.819052515045006, 0.2353728426618933, 2.441495991316177, 0.4689975029575301, 6.36479070098702, 0.501963856483453, 1.155173566804371, 0.3029791752249296, 3.710694239289469, 0.7371667962152887, 1.911346283016054, 0.3691203298834842, 1.027711744192628, 1.502724363578014, 0.3011502503588185, 0.9854850481813123, 0.3756291290353144, 4.112619261559145, 2.95680467264194, 0.4290868700547413, 0.4685206821924932, 0.4059560116267469, 2.50268310954176, 0.5227540827634783, 0.4671119113495291, 0.9338453011500626, 0.5571522059019809, 0.5886144003589358, 1.839204151926823, 1.060599026952742, 3.125234562282934, 2.54439731915596, 5.066889740057174, 2.915048895304102, 1.905524097635808, 2.212264991895895, 3.738815510070657, 2.074128973780481, 3.31083714843465, 0.6408491718084866, 3.068722634962862, 0.9229478196348808, 2.172843296216792, 1.750529904876356, 1.222415748191823, 1.340180507105605, 1.65676234501901, 1.177884311452671, 1.853985207061093, 1.949028686126, 1.848056555892881, 1.490331787720329, 2.808897643683787, 0.5370047325763545, 0.754447735175597, 0.292920631250886, 1.922199953975427, 0.2194780669088011, 2.411432550287456, 0.4936742969382611, 2.687417056073211, 0.8937719293629136, 0.630203462304753, 3.500554848762429, 0.8047116371904648, 2.9258711565943, 2.978602987543041, 1.892870394871532, 1.224886235480212, 3.334368853761007, 1.443700495825233, 1.7051887541283, 0.480593393899601, 0.907604501104216, 0.9198540076829841, 0.8702783448030316, 0.4699917745647508, 0.6213048344098008, 0.9960464828596589] 
     ],
    "optimized null":    [
-[1.118923161648219, 0.9980202548897937, 0.9997654691276022, 1.028326548692021, 0.7919741374095479, 0.6742163346738066, 0.9701775068012184, 1.781350909123149, 2.014615609490285, 0.9375026657270238, 0.6503469909372603, 1.467509823797021, 1.009616470968526, 1.168421464905222, 0.59794016479865, 0.8088642155191522, 0.9570182332372693, 1.200458035608254, 0.9382406902547993, 0.971502044629861, 0.9494035585701087, 0.8642047320556682, 0.7618657208728498, 0.9877802717728724, 1.196913567892764, 1.219008654454505, 1.195602379971315, 1.386927451387816, 0.9612092240804505, 0.7608092856171619, 0.7774974434748834, 0.882472157999228, 1.287408843481257, 0.77835738564002, 0.9105718870056999, 0.9901735448217958, 0.7939955331410506, 1.000490010159418, 1.004589199921733, 1.297516080632708, 1.03030381955465, 0.8106679119008423, 1.81201409338234, 0.7198749295257847, 0.6994440009800842, 0.8437894137548632, 1.143486692785445, 0.9393973334278157, 0.8256667500261211, 0.7815159607314222, 0.5985208951864024, 0.8535790889335229, 1.025460140178824, 3.820941298927726, 1.291930691854327, 0.9067539623849099, 1.157350624394714, 0.998318955418969, 0.9161866303121252, 0.8876780413980894, 1.109157480575484, 1.092621268372832, 0.8972624848442422, 0.9889106716665784, 0.8341566095527148, 1.038544978108518, 1.714787775296502, 0.9137222760182561, 1.034926570525361, 0.8813745500117369, 0.8349529524516258, 1.213599287773434, 1, 1.089476250837934, 0.8899148576721072, 2.300141517859181, 0.6825541016975851, 1.003665786880968, 1.237110533718188, 1.020075909706045, 1.638150182736532, 0.9011618842606461, 0.9230020461155208, 0.751689080395277, 0.5897676439072257, 0.6404917862661024, 0.7469389376638015, 1.083533646483151, 0.7344437672842805, 1.131725226416453, 0.9190373093865288, 1.470665196381038, 1.267251236251085, 1.076738563303299, 0.9719321192139432, 1.046564634995135, 1.040861206200881, 1.432126587856311, 0.9607511063877517, 1.317983216727182, 1.009193498305615, 1.490294304430241, 0.9453834990966208, 0.9949520064421568, 0.9321847062820814, 1.012192223349541, 1.006095335695502, 1.015717182050207, 1.155947081675256, 0.7426317882836824, 0.8600656083242881, 0.8659102843696671, 2.043199066063688, 0.9105718870056999, 0.7755680708217269, 0.8691797858502243, 1.408772939677855, 0.9935920773928444, 0.776611704010421, 0.7417817446846022, 1.113087499879386, 1.540328788060018, 0.7887000169650941, 0.7125843942768558, 0.803768142354686, 1.030948607017191, 1.106410103708125, 0.8462900614413438, 0.9257201660506196, 0.9862223424699452, 2.874290057428853, 0.9765125041895547, 0.9522206558439166, 0.979008503258283, 0.8163413206500215, 0.7929865064112649, 1.054431661259741, 1.391867727782659, 1.55344883290767, 0.9159617667614252, 1.37597067666192, 1.180188215894089, 0.8980539087871242, 0.8445482715276972, 1.439858975048729, 0.8167533472760263, 1.611375099688448, 0.9949969190225336, 1.453373381083946, 0.8294327035809631, 1.883890801528407, 1.621067636191696, 0.7786019875784795, 1.241031199394852, 0.8699818919359624, 0.8969821406492622, 0.8552871694200248, 1.476143154036665, 0.7328425886346202, 1.12339872066542, 1.055700479953033, 0.8643592588676906, 0.8828252272762036, 0.8310350398630689, 1.509625875333898, 0.8258835645292275, 1.192338427340326, 0.988317199275236, 0.7869748564877793, 1.092663634718098, 1.540873058588039, 1.27733975846824, 1.071338379207414, 1.598643725487392, 2.039697563641063, 1.125982095744282, 0.8865373778453701, 0.896677110067575, 1.480314453817297, 0.6279749170263321, 0.9454481522954102, 0.8270407761576262, 0.924976567928722, 0.9460839037512674, 1.00781396274934, 1.11935672287797, 1.612656256447746] 
+[1.115754847329475, 0.9981043798375602, 0.9996678649277134, 1.027524895296611, 0.7950614097315224, 0.6815044886735678, 0.9660630441693723, 1.768207537367336, 1.995453831253169, 0.9376497008654193, 0.6553491413144868, 1.461081981960806, 1.013114798606584, 1.166859848568389, 0.6014901871758097, 0.8123191197415052, 0.9580261569974873, 1.198185908129791, 0.9405425950826685, 0.971114257615956, 0.9488537673129271, 0.8646610989285944, 0.7646430387003397, 0.9893117681890439, 1.197283659537823, 1.211007891429009, 1.187153808700299, 1.379812109844639, 0.9624959240764994, 0.7612299911652801, 0.7835844165719837, 0.885684857590916, 1.279101118649989, 0.7844909969836256, 0.9105640059139158, 0.987661389211442, 0.7933470171962204, 1.000355360146534, 1.004491368971939, 1.287636006929032, 1.025334362891704, 0.8161200204209572, 1.800919746565827, 0.7201977656989363, 0.7006786063830531, 0.8445748286055409, 1.13557449720856, 0.9408284217407435, 0.8291599938547976, 0.7847367003613621, 0.6044458050342899, 0.8578237870323223, 1.028327328223754, 3.732522507488938, 1.284572434603426, 0.9117994273854937, 1.151534378021883, 1.002963004237252, 0.9184071418215726, 0.8891548248386872, 1.107752217118886, 1.08471556447794, 0.904519273163679, 0.9915866239749839, 0.8379284266222653, 1.039306992564055, 1.699720775349538, 0.9164148538876519, 1.031865543996781, 0.8814594623715953, 0.8357649706134436, 1.211073491981048, 0.9999999999999991, 1.09042273536382, 0.8969295321069349, 2.282699983096541, 0.6906271160345826, 1.004025552082599, 1.229544542202273, 1.020229958793708, 1.635583530470503, 0.9012757793992182, 0.9262513777205981, 0.755045001493049, 0.5956960416334989, 0.6446026033796701, 0.7494241039808305, 1.081919574928575, 0.736166264060359, 1.130809144056797, 0.9190054297705696, 1.465760638675436, 1.264811511728797, 1.077114430307984, 0.9731626619098518, 1.046507786460218, 1.038574549189271, 1.434108431082798, 0.9595323092739115, 1.311940940446743, 1.010601751735099, 1.484849122531978, 0.9467219554462175, 0.9999147957468079, 0.9337530742390975, 1.014803716779695, 1.007462002443472, 1.01533333078764, 1.148263019382676, 0.7422032808770405, 0.8639145321361502, 0.8673930454219201, 2.026916851640757, 0.9105640059139158, 0.7803929380437222, 0.8703888058550368, 1.410247919613535, 0.9914652054039267, 0.7814313499738406, 0.7431099613737392, 1.113679671632678, 1.531754344457596, 0.7916210828345887, 0.7180922698986317, 0.8040633094792566, 1.035367687704656, 1.108843159118376, 0.8485144325155356, 0.9245149419204511, 0.9856066046472061, 2.840752049492474, 0.9719349042983756, 0.9513072209812393, 0.9818577734913401, 0.8190574737799189, 0.7957337116895524, 1.058600036393583, 1.378130836062728, 1.543996499685658, 0.9157765463527018, 1.371864786157317, 1.179088778643788, 0.8990667969958885, 0.8491807688030968, 1.430795716876661, 0.8233279102457327, 1.602054722411324, 0.9947248981278961, 1.450547523094791, 0.8328149332184142, 1.865584692965049, 1.606267608729814, 0.7854775725228893, 1.235086019516011, 0.8715583188734622, 0.9003125968429074, 0.8577816502175432, 1.466928944424435, 0.7382231658168724, 1.118381528668526, 1.062150053798357, 0.8645443140611492, 0.8866230937072818, 0.8323827468669284, 1.495223917742498, 0.8220538187834464, 1.189868122430675, 0.9871334636897435, 0.7944859535178556, 1.0925978798477, 1.52803476753022, 1.276753099905758, 1.069980901551178, 1.586787129488837, 2.015280193477939, 1.124546923383764, 0.8906149060472343, 0.9027629088385779, 1.472050188194838, 0.6332413644351131, 0.9451405108005444, 0.8291877249363551, 0.9274410423803646, 0.9465758585718032, 1.007518685935051, 1.117050744578768, 1.604376953048971] 
     ]
   },
  "Site Log Likelihood":{
    "constrained":    [
-[-10.45729861177352, -3.484017570185021, -3.811593093827024, -18.53808870245015, -17.92309552060635, -29.83947832086448, -32.51456888432799, -26.14022567456645, -18.98957484098232, -10.33347856776535, -16.45292539731993, -23.86010381033633, -20.00687543711394, -16.65179796964098, -21.99232160499268, -12.26652073720412, -10.69225356932102, -15.60314346893525, -11.01132866125176, -8.521297155687831, -8.203139397826641, -11.43545706508415, -24.90046120971902, -13.6386798900763, -14.85763270108216, -14.7030317250254, -22.05138318385674, -15.98662844335023, -21.8003647511144, -18.57068156644835, -22.299055200187, -14.20074227547402, -10.45246619974257, -29.65657150543187, -5.937537382195638, -33.78920222670538, -15.44637827577353, -4.279026884494699, -4.808492102928678, -24.63079311886252, -19.95624962482634, -20.75045752192579, -12.74902310767432, -18.99427847476613, -14.28731466672857, -24.54528292419485, -16.76361995667699, -15.30372003397147, -21.15548703165981, -23.72245288385755, -28.94171761244187, -31.14183824690388, -20.64762811392306, -24.08520562625058, -32.41122173355103, -27.15825647361205, -28.5179867447387, -21.82691317662457, -23.87561847496401, -15.96134254249656, -22.91741429446779, -22.8344267349475, -18.86994129807232, -24.15268806222941, -13.09988257350861, -6.987933615627104, -20.27062516100397, -11.6267899578313, -10.76199226925333, -9.365202828107813, -8.830802980942332, -22.25274148442388, -5.072420031658066, -11.5940578599292, -24.90254274563229, -26.4504338975355, -29.4914117779418, -14.39917492841001, -30.20915692724294, -15.07835940842867, -24.47922859714559, -9.963108156848188, -12.02484522350882, -10.47082266101894, -32.61997541577167, -22.41917549927993, -15.45008408736274, -18.58952738985428, -24.90070817016433, -16.46583864612196, -9.349881275491541, -21.92481437356786, -23.89225210843373, -25.41089239829785, -13.11222485538043, -23.55550258653596, -13.5386142710809, -25.36851139033049, -12.93730850270479, -18.80108927581331, -14.23685164495206, -22.26383266334966, -10.55622492327747, -21.48906087213606, -10.38853588609826, -24.53689740053753, -11.36767104821917, -6.908653364620656, -21.84280151068446, -17.93716231251139, -24.46209768558333, -8.752467536320703, -25.50970610456629, -5.937537382195638, -26.74893035287963, -11.9403240118369, -26.13347920733979, -8.842765208651075, -22.25304376265024, -12.64504365092861, -11.95155411820952, -16.44565617489921, -12.21136817821285, -19.4495506152908, -12.03636955134022, -26.76158975846396, -24.28299039768532, -10.41253856833306, -18.04928878164386, -12.66411737564947, -24.89370230796465, -13.28589560426102, -12.14998856202217, -15.22485748978356, -11.10445442252986, -15.26584291199847, -21.18251113737594, -17.4492424252813, -22.91858352137089, -32.12984803882419, -34.72655653940613, -29.46637589613799, -23.83622026476351, -25.19174747094332, -26.15371116437007, -28.38602800921473, -24.3904479288928, -11.83470465315949, -22.99304711962677, -14.1052741197831, -27.4333232450484, -16.96102482386623, -16.48031664612245, -16.51933846935232, -17.67884199792057, -14.76033658655028, -19.64011886967656, -21.73563121093473, -27.07964360348662, -23.31227029359847, -30.36351219328728, -14.39405059091475, -9.0012985358923, -13.02696101249317, -22.60078004596954, -16.83684027122174, -27.58316083045541, -5.435892920303646, -29.48238449481695, -10.75922123674425, -14.39572297485616, -21.65465418121673, -13.81883365226544, -26.28515446199947, -25.94713203139664, -30.32048162447653, -18.74338069598867, -29.89507747948719, -18.59896471825973, -26.6197512688528, -7.057151084653121, -20.11123180495239, -13.68737039495877, -13.8591446292234, -7.100328940735415, -7.27389954199287, -20.4341543043075] 
+[-10.45090262193947, -3.483902519448886, -3.812918674840162, -18.52967367048658, -17.91293552421441, -29.82234031390563, -32.4682953322895, -26.13136592613271, -18.98353837196509, -10.33536376131518, -16.46521792962993, -23.85656647453301, -20.0097735066148, -16.65014379412616, -21.98016668059303, -12.27360074288172, -10.6941140816234, -15.60391557669279, -11.01584022727405, -8.52552567646616, -8.213958972448863, -11.44408858234599, -24.88483689931558, -13.63702466513553, -14.85783877857095, -14.70130071011686, -22.04314741356357, -15.9841391162467, -21.7894026756885, -18.56582389265503, -22.2970319079228, -14.20013718887272, -10.46062459593404, -29.63172583834114, -5.942895596547681, -33.7608698289049, -15.4453605547865, -4.280368277884408, -4.808122799169091, -24.62846286067449, -19.95038043810364, -20.73996670837995, -12.75582605885885, -18.99209486958509, -14.29899136245764, -24.5323131442472, -16.76719624729421, -15.30050374515202, -21.1470077553502, -23.70452335151525, -28.92097938243611, -31.11127051701743, -20.64056509230148, -24.08245503901272, -32.37575293948952, -27.1397706688597, -28.48714117432097, -21.8157658433444, -23.86066380099029, -15.96179451261716, -22.90078930509975, -22.82780054877238, -18.85863915537205, -24.13596526976866, -13.11062461592573, -6.997019061890909, -20.27078018556115, -11.63234308244865, -10.76772040073618, -9.375030039476741, -8.838080080197956, -22.23813284474415, -5.071925291421929, -11.59502858303457, -24.88722835704511, -26.44848697533541, -29.47226045522432, -14.40683310705516, -30.18120324933559, -15.08227050749874, -24.4722144291366, -9.970786483716564, -12.02451510684466, -10.47801146285196, -32.58390043458385, -22.41272747457295, -15.45732063757284, -18.58799241229831, -24.88853139164258, -16.45692685905665, -9.360428939345834, -21.91694140733639, -23.88498099910663, -25.3962161614738, -13.12135916900047, -23.54673109739056, -13.53887882815504, -25.35896009046736, -12.94299852184595, -18.79824781975578, -14.2386090251928, -22.25439432796464, -10.55845974254318, -21.47824043379306, -10.39206663293596, -24.52508757095106, -11.36803395343945, -6.913098566554392, -21.83429025783947, -17.94930007893821, -24.44667277945298, -8.760710459872854, -25.49076161826261, -5.942895596547681, -26.74335661856266, -11.95479247264214, -26.11935275663087, -8.84576691015538, -22.23961500868496, -12.65473600559412, -11.95172286310796, -16.44673955121138, -12.22327296206971, -19.44139078647339, -12.04821884318743, -26.74230137861179, -24.26902923541198, -10.42122278454815, -18.05639580573808, -12.67270476859209, -24.89079815344573, -13.28852575517897, -12.15758680881002, -15.22362700005587, -11.1087132369094, -15.26580355619412, -21.1714116232631, -17.44878592939348, -22.90508349789376, -32.10916540506811, -34.70167299760255, -29.45222601783585, -23.82489796368972, -25.17657127603625, -26.14089446397534, -28.36631233203936, -24.37577873996561, -11.83810875252699, -22.98051281763511, -14.10620053901725, -27.43594024958254, -16.95410198934557, -16.47464786440968, -16.5154876564325, -17.6698746836033, -14.75877758237345, -19.62594140417327, -21.72627428789965, -27.06861465296137, -23.30295590843949, -30.34866123718632, -14.39953916526644, -9.002852170879979, -13.04044047087386, -22.59571981707717, -16.84927191220984, -27.56793378022781, -5.44310980584226, -29.46507972190871, -10.76293375912305, -14.40381349426134, -21.63861962597842, -13.81954299123125, -26.27612327461895, -25.94071651096489, -30.30727965502338, -18.73706186163648, -29.88139839294296, -18.59623366674176, -26.60843026312014, -7.063609265673095, -20.10755427375394, -13.68702804353427, -13.85651640481543, -7.108876310942952, -7.279280331780171, -20.4371936150988] 
     ],
    "optimized null":    [
-[-10.000746412889, -3.534975268563031, -3.855196330132343, -17.9531754129423, -17.27523311609171, -28.69737251844359, -30.487403824811, -25.3469865397239, -18.73986474128691, -10.5941470716412, -17.17746554049388, -23.83626257910331, -20.44724749063709, -16.76105507711494, -21.41959368469256, -12.7399136042534, -10.80700483642069, -15.67755309754298, -11.52536299421752, -8.892434491135736, -8.926852661062641, -12.20869809997624, -23.72417791244537, -13.64065197048924, -14.93603840556554, -14.8358925422005, -21.65672787001029, -16.03500867314082, -21.11654452541332, -18.53445530201509, -22.37183650032519, -14.20202582413271, -11.06832299336804, -27.87698168792971, -6.541952472626266, -33.16649523981481, -15.69133721810966, -4.332820962725578, -4.846683129097396, -24.49375694739045, -19.67235910587276, -19.99445132707328, -13.14222447425636, -19.010192624522, -15.07927260784268, -23.54687249677092, -17.35293440007094, -15.36431670327766, -20.55308672706422, -22.49522159373395, -27.87861362498808, -29.85147043539681, -20.21211595634147, -24.21818138264384, -30.69423513967148, -25.71221557332896, -27.49066994877449, -21.14323500088168, -23.07138885914685, -16.25115300126723, -21.73336130310753, -22.40531441170235, -18.20030993527343, -22.95453268750557, -13.99546052997636, -7.751046909853225, -20.47360263421817, -12.13254771763505, -11.26205241801605, -10.02950893550899, -9.511533636871842, -21.36450946580444, -5.072420031658067, -11.65239902588355, -23.69961716091314, -26.2209124593937, -28.47720772549854, -15.20352359389407, -29.28969870111495, -15.45085261296868, -23.94598869120682, -10.80322523133013, -12.0107767142687, -10.96797346503774, -31.02416709659281, -22.07946508441355, -16.27875786287543, -18.59255520779903, -24.25576326194178, -16.16128150518837, -10.11474753171002, -21.45102326094385, -23.35180477003816, -24.34618548249837, -13.89257222918985, -23.06345551040454, -13.74605107743702, -24.71902198635289, -13.44815326344599, -18.94415314361011, -14.45841315258903, -21.58323588087952, -10.68243175660201, -21.00409493400298, -10.63960151353855, -23.50744845859135, -11.46380607942174, -7.40636973341585, -21.38093160255466, -19.10200007557443, -23.40340080290285, -9.37553226377444, -24.34770562165953, -6.541952472626266, -26.34796839682552, -13.00811807862387, -25.1446328603122, -9.145170849858582, -21.34095019187551, -13.35620130330373, -12.03104276076478, -16.46484206770943, -13.18805899222384, -19.12316542756082, -12.80950895147612, -25.36038522816893, -23.28470818774974, -11.10276351543467, -18.73608690839096, -13.56041431572836, -25.01727916833232, -13.9161793832148, -12.87181769553462, -15.27087090233286, -11.49472359736922, -15.56907833534053, -20.61562094868151, -17.71694784548008, -22.20290716981454, -31.08913439244855, -33.39050427276854, -28.54469152779638, -23.07607739799698, -24.21370116505611, -25.18013621147851, -27.44183700650422, -23.65277019084076, -12.27923687244804, -22.22914406475213, -14.0003541619513, -27.28037045002411, -16.87452367228698, -16.02656793234758, -16.4368993455096, -17.02603324065743, -14.48658558781633, -18.85592317056478, -21.445852863631, -26.14649750870843, -23.02202321164394, -29.3687914002132, -14.87698920390545, -9.162378872547357, -14.08396726867812, -22.35033791702401, -18.17629921418486, -26.85997070710383, -6.138465689345856, -28.23794764233195, -10.96169835180006, -15.29189705116706, -20.62896804216628, -14.10547218000938, -25.66295172482926, -25.55413515032033, -29.78710785677539, -18.41457433641119, -28.56728137258359, -18.61591042688218, -25.61514478015318, -7.742583058377544, -20.01785764703301, -13.69364689624316, -13.94240945383619, -7.871642437614435, -7.868530143948813, -20.91326095114609] 
+[-9.999848579629438, -3.534335603769343, -3.855918073448204, -17.9538874611, -17.2747438441717, -28.70251512907133, -30.47790138370519, -25.34860297645322, -18.73998421748136, -10.59289124751458, -17.18308498211639, -23.83733702940499, -20.44895802290328, -16.76200145058928, -21.41512627843794, -12.74128144037208, -10.80788115515916, -15.68002019797957, -11.52426196006769, -8.890626497321907, -8.927186376073541, -12.20589630571461, -23.72353563066267, -13.64042840813737, -14.93814645500984, -14.83220690675711, -21.65287069195306, -16.03428112649423, -21.11697461820088, -18.52944869764263, -22.37670423099836, -14.20345263011663, -11.06566694045806, -27.88043644714669, -6.538431672725973, -33.15633700907163, -15.68536363930423, -4.333402162466966, -4.845797260874019, -24.48925018012824, -19.66439158624725, -20.00035787499095, -13.14645599501158, -19.00516386388902, -15.07790314758396, -23.54298939203635, -17.34764924361699, -15.36291392817002, -20.55586733882526, -22.49220554409181, -27.88018322030692, -29.85019937935898, -20.21565116547379, -24.21230871760245, -30.69085508292206, -25.71662926722871, -27.4818010431507, -21.14811566898335, -23.0711185608064, -16.25018056217564, -21.73334467076629, -22.39810962558813, -18.20518596093719, -22.95787740520259, -13.99885201582488, -7.752725709331387, -20.4739986642663, -12.13267790621028, -11.25949129864883, -10.02958587932763, -9.509038565562101, -21.36429199478783, -5.071925291421929, -11.65444684825109, -23.70852394255006, -26.23163183473617, -28.48229802380226, -15.20463784468526, -29.28619398287981, -15.45140934453945, -23.95498653878558, -10.80016950117357, -12.01290561268065, -10.96917043588625, -31.02267359559108, -22.0781027350932, -16.27691301947574, -18.59322700501767, -24.25197878119941, -16.15985332581128, -10.11442001712052, -21.45171161176134, -23.35453134857961, -24.34751944095499, -13.89273816685505, -23.06187826758802, -13.74354001612338, -24.72747877321687, -13.44568802121267, -18.94235060457898, -14.45944155129241, -21.58604323426556, -10.68388474245953, -21.00647169464934, -10.64062211576559, -23.51482131466939, -11.46438470940085, -7.403942742248016, -21.37422487105309, -19.09775242663159, -23.40778038061878, -9.375605229265306, -24.34649611581681, -6.538431672725973, -26.35114829216582, -13.01006841322404, -25.15189928947141, -9.142136580235025, -21.34517917780335, -13.35445734769922, -12.03205769212679, -16.46587355698196, -13.18974649780325, -19.12485490220534, -12.80929455473056, -25.36299788062012, -23.2882373255091, -11.10305048579558, -18.73608477233943, -13.55971725450759, -25.01750357654675, -13.9087034380676, -12.86885500181513, -15.2737626703588, -11.49402903111002, -15.5672968520748, -20.61902598615607, -17.71068017555166, -22.19994834214875, -31.08728870377415, -33.39511680382837, -28.5470813431575, -23.07374293025032, -24.21907120646889, -25.18035634613069, -27.44237031336156, -23.64986467449063, -12.27778083932105, -22.23119250973097, -14.00343928803062, -27.28347817719133, -16.86809667669382, -16.0323554685095, -16.43382396383096, -17.02753688184933, -14.49004446342468, -18.85519821718548, -21.44211421111342, -26.15097096898469, -23.01583971345514, -29.37616433486512, -14.87573482137308, -9.16428613534381, -14.0848311489858, -22.34452545099508, -18.16982547353947, -26.86155526961141, -6.13603907590076, -28.24643921897574, -10.96379664456025, -15.28950849406241, -20.63001835633828, -14.10445507093618, -25.66424230560382, -25.5500203560601, -29.78656547037373, -18.41837074179778, -28.57481966126671, -18.61568017561408, -25.61785082518842, -7.739921293110954, -20.01719213846289, -13.69524229967891, -13.94055442162264, -7.871406957800698, -7.865905721003565, -20.91389045801702] 
     ],
    "unconstrained":    [
-[-9.888379652897939, -3.536956975958899, -3.855430888511407, -17.92524264198113, -17.50845965857853, -29.09157676668757, -30.51768005233528, -24.76961452555787, -18.03943632860708, -10.65868274934065, -17.60771476681289, -23.45269561216572, -20.4376769636146, -16.6054014145564, -21.93385827359542, -12.9520378226385, -10.85093767163684, -15.49484991723633, -11.58911175769067, -8.921346396691311, -8.978773985704009, -12.35464367982677, -23.99616287059628, -13.65294697344841, -14.75629218887099, -14.63785459209203, -21.4780777279763, -15.70791783931325, -21.15610770415758, -18.80782786477065, -22.62351142339454, -14.32705386381445, -10.81569144349841, -28.12755118363321, -6.63563490222878, -33.17637029323138, -15.92201466162742, -4.332331072581934, -4.842104427446767, -24.23330521785812, -19.64250537668504, -20.20434811557675, -12.547785488861, -19.33887041557516, -15.4367421517065, -23.71672482205896, -17.21885230292473, -15.42683344726171, -20.74465076426493, -22.74174129986231, -28.39190746698947, -30.00978751219203, -20.18697452723667, -22.87768457704827, -30.43809737982556, -25.8100997042818, -27.34453650032288, -21.14491746000365, -23.1589240493258, -16.37029916899328, -21.62976060249833, -22.31673476907595, -18.30871676975877, -22.9656839608183, -14.17679464299017, -7.713226235808525, -19.93431330744026, -12.22277632689638, -11.22772194016784, -10.15578153700462, -9.691913536959838, -21.17091890362336, -5.072420031658067, -11.56670194893985, -23.81624664728228, -25.38794180884747, -28.85912121067668, -15.19986450963457, -29.07692025541677, -15.43097556716119, -23.45242102332656, -10.90729559707754, -12.09090054194056, -11.25340596248809, -31.55219374013023, -22.52498406608164, -16.57052970348788, -18.51232761277223, -24.56440510741808, -16.03753828771942, -10.19917609135148, -21.06530844796211, -23.11495459612987, -24.27224885909952, -13.92104154234985, -23.01794248639294, -13.70600262406975, -24.35986152238043, -13.48819316139627, -18.66805044150527, -14.4492616572491, -21.18426226067477, -10.73859637126286, -21.00915571172136, -10.7098258147646, -23.49532996174187, -11.45772924514136, -7.390774787133855, -21.23601161044981, -19.39955500699172, -23.5541474067981, -9.519506237286315, -23.6331888724584, -6.63563490222878, -26.60212792035497, -13.14832336553394, -24.80191379036194, -9.151599391331736, -21.5937649828387, -13.65490152701742, -11.92390507531763, -16.03284617533124, -13.42542822929183, -19.46202235330671, -13.02795338302471, -25.32990587208053, -23.18358755436579, -11.26965663135059, -18.81327019488709, -13.57428776606662, -23.96147346112334, -13.93994710685256, -12.92077618523389, -15.29208585316513, -11.69764632373376, -15.80102740870741, -20.56261903661609, -17.38630131122748, -21.76242965716022, -31.17691504697109, -33.07134484404992, -28.37901759704339, -23.18360257842184, -24.38265454953325, -24.81559103668038, -27.64425513672643, -23.17568227719417, -12.28425251073614, -21.85525674064724, -14.18736746348983, -26.64703123652192, -16.39143870542445, -16.27682322339721, -16.22095669907547, -17.16531612207426, -14.59530491502789, -19.01224116633539, -21.05642015432602, -26.45732185834116, -22.90566454933433, -29.31458689156966, -15.02275599163344, -9.287006901120908, -14.26905058779356, -21.93847606157545, -18.36760069262192, -26.6840542632031, -6.150217270208246, -28.47750662196133, -10.87307993496604, -14.85954787421955, -20.38418844062237, -14.03656349147213, -25.19379612663061, -24.84133360657191, -29.66845222794427, -18.53500632737776, -28.67634082079026, -18.22365589287899, -26.08039983450566, -7.798679287046689, -20.20775892609134, -13.77163377000268, -13.9978334745163, -7.863858845763236, -7.755775978219822, -20.4353782829297] 
+[-9.890317410653219, -3.536233022893474, -3.85625026368956, -17.92673456500613, -17.50407976653743, -29.08596757047699, -30.51242756748906, -24.77863663373813, -18.04911270867274, -10.65727010047667, -17.60567212730394, -23.45815978461676, -20.43592847868088, -16.60768519998243, -21.9234713360606, -12.94914345179085, -10.85076135278797, -15.49921152824752, -11.5855603015069, -8.919937644887968, -8.979686959664745, -12.35131394768199, -23.99188180079542, -13.6511741693905, -14.75809108112158, -14.64075392575073, -21.48131200704493, -15.71233378888117, -21.15520006575576, -18.80226844212963, -22.62058071107572, -14.32484671297345, -10.81950936027501, -28.12315663014189, -6.63212275746709, -33.16875237251921, -15.91685819187105, -4.333046865445894, -4.841315948000512, -24.23644219570189, -19.63937281915182, -20.20355172597554, -12.55815849029599, -19.33339329399536, -15.43360912343386, -23.71191133170305, -17.22051055580043, -15.4239084202805, -20.74320948508744, -22.73461257510765, -28.38362648580198, -30.00355595636499, -20.18771763645436, -22.89522443705173, -30.44042915566087, -25.80896450643621, -27.34070574832697, -21.14515704579125, -23.1562330378798, -16.36766446463329, -21.63101173820942, -22.31679182551859, -18.30553762722511, -22.96632637345011, -14.17567460773119, -7.714171571593938, -19.94353467648899, -12.21996402578803, -11.22812292690234, -10.15576214462901, -9.688446406615418, -21.1727848450384, -5.071925291421929, -11.56788139658788, -23.8173019220834, -25.40627288927275, -28.85245325414149, -15.2006203734581, -29.07955017296254, -15.4313812928555, -23.46298689873945, -10.90411348791657, -12.08951522763595, -11.25014836276909, -31.54069833485993, -22.51722400594995, -16.56536324824294, -18.51449015736655, -24.55827806470882, -16.03691989264587, -10.19888326541777, -21.06933729674679, -23.11960824008805, -24.27323379929944, -13.91994220197101, -23.0164195642338, -13.70569086891633, -24.36693541947492, -13.48699731228228, -18.67084292997368, -14.44889560405677, -21.19073006816119, -10.73863457701958, -21.00655690253262, -10.70916536594832, -23.5001261033595, -11.45695040996968, -7.388725778950405, -21.2359744884371, -19.39588453652134, -23.5540618168286, -9.517868294607256, -23.63998026959247, -6.63212275746709, -26.59910601158946, -13.14888367710742, -24.80813377102439, -9.150708004758682, -21.59180715470589, -13.65136859644867, -11.92438813987756, -16.03945984809169, -13.42341893021988, -19.45601211078778, -13.02737182450041, -25.32824126316957, -23.18492005264431, -11.26731867080138, -18.81457083846118, -13.57421523958925, -23.97343475326927, -13.93716988571839, -12.91877321996798, -15.29207148498773, -11.69363005314582, -15.79578753423454, -20.56207867133534, -17.38995206112281, -21.76557415759171, -31.17527159287139, -33.07894583174475, -28.38233942448484, -23.18014087607957, -24.38255440213001, -24.8221256112489, -27.63677103815755, -23.17857766761929, -12.28306990366699, -21.85925142243789, -14.18638311853461, -26.65990366493676, -16.39418344445917, -16.27381884205222, -16.2226833447466, -17.16500938029794, -14.5950577095621, -19.00860391599289, -21.0589431491008, -26.45448007637202, -22.90395713694845, -29.31586912843093, -15.0212875367872, -9.284621444861237, -14.26829406063716, -21.94224947761382, -18.36577488663612, -26.68771279011595, -6.148989103020872, -28.47649919178767, -10.87523840804787, -14.86552604995768, -20.38569814182948, -14.03681427163925, -25.20253100696378, -24.84926211649333, -29.66918525060677, -18.53421389094812, -28.67711498073234, -18.22902406064756, -26.07475445227853, -7.796342966974589, -20.20450084049472, -13.77056835236659, -13.99545858676251, -7.86391639630019, -7.755213772603022, -20.44115496804752] 
     ]
   },
  "Synonymous site-posteriors":  [
-[0.08576487129701713, 0.2936722378990316, 0.2901632602723997, 0.01635516164580625, 0.0171445713661009, 0.000329807826277061, 2.384037236058195e-06, 0.003474937198538037, 0.1657001102485818, 0.4931122461392571, 0.6116781976326224, 0.1232572132258079, 0.3167287850643093, 0.3360418775747802, 0.09625774163526932, 0.7077210076579118, 0.8230716605433912, 0.4692840075680767, 0.8542599193835906, 0.8678806224860721, 0.7187694305926973, 0.8652759434333591, 0.006733209198735493, 0.5563418685268529, 0.548770039188077, 0.1117221464925625, 0.06375767530950946, 0.2544248885020188, 0.01241307080226442, 0.06415938924723534, 0.0664819611257975, 0.5678603832955883, 0.5701480360753304, 0.01716185680432071, 0.7450690448837864, 4.340363369344909e-06, 0.1054553312659123, 0.2962973099054295, 0.2887729969101556, 0.002139003370945352, 0.009013172357941268, 0.1358034694997206, 0.4571022356539327, 0.03050258030555141, 0.6104018187033817, 0.0009310184681936825, 0.05125568890333056, 0.2012729288816644, 0.02168623857883216, 0.005190644975220393, 0.0003844182663365903, 2.025101452550204e-05, 0.2653166678500586, 0.002736950624682267, 4.330160538654619e-05, 0.002447017669235062, 1.04185776899838e-05, 0.07686655084745994, 0.04255051609568109, 0.07964927182431392, 0.009868735494425898, 0.003987427214854124, 0.1864468621560382, 0.02614830208528422, 0.339871175815004, 0.9584270556742166, 0.1208451401789099, 0.8379535111570964, 0.4399112612280809, 0.6546600093353926, 0.6014957564153406, 0.03692874096493579, 0.2645541257391173, 0.877048492043487, 0.005212760236057918, 0.02626182426280086, 0.0003466347596566336, 0.2143323363123782, 3.94830951316172e-06, 0.4695770030113981, 0.141253166719253, 0.287277996900563, 0.529618089155993, 0.7751260138271018, 1.589794382004903e-06, 0.01061110460382564, 0.06904202423665572, 0.1222752760738798, 0.009436108368219053, 0.1756755023547773, 0.8674741705013883, 0.006953150480735887, 0.01485544007614186, 0.01061671400804696, 0.4622922362107368, 0.006976448397641074, 0.2288428608566239, 0.04492921236889752, 0.4792814192644717, 0.08021780746327278, 0.4272287756026639, 0.04187262145239815, 0.7448375318386113, 0.1041516052437809, 0.7758641911259492, 0.04153272254198651, 0.8730527081784645, 0.9061533002525032, 0.007394637725624075, 0.3286876779500328, 0.003007591552118394, 0.7696698519008212, 0.01472154002347215, 0.7450690448837864, 0.0002833970218347724, 0.4752847620805873, 0.06772419306275075, 0.7916442061973822, 0.04768815546756307, 0.633646799271313, 0.8506170933861232, 0.5333086229236574, 0.4601664067609844, 0.1298585434125494, 0.5258807564626594, 0.004910934759931754, 0.005326392789739794, 0.8568922356649976, 0.1781177185740091, 0.2618990376844352, 0.02043267281856545, 0.1513767944689721, 0.390161257271147, 0.2016761548930196, 0.862737391517766, 0.08518368394903716, 0.08643358463113204, 0.05626956022636653, 0.01204362533281676, 0.0001127787870965998, 9.187529415014566e-05, 0.0291337834475492, 0.00445510836740222, 0.000433375749053344, 0.01045459853680832, 0.02886192573391665, 0.01378875281992316, 0.419096617458437, 0.08903224698878176, 0.6525609111129962, 0.000772784141393912, 0.1484449334606463, 0.3645995750997711, 0.1075676751865187, 0.05248459777601974, 0.760566182374103, 0.09207060671403174, 0.05268528446916099, 0.0009595976424648991, 0.01801675181476272, 0.0003997370600438763, 0.4402401340454297, 0.7531135804916973, 0.4676233954749258, 0.006368990121970666, 0.1181278057317597, 0.0001342462574260838, 0.9089018067832817, 0.0004345263536072176, 0.8867574663987829, 0.3111239693194546, 0.02252285354211625, 0.2512560362419685, 0.02269736493711449, 0.006974745835283193, 0.001246559659240012, 0.1018711078071347, 0.001887551089155725, 0.1122951541441214, 0.003158025675593529, 0.9204927908967985, 0.262934005368038, 0.5690451557167514, 0.2158987219764257, 0.9551133675001365, 0.9600236276711078, 0.02872243122605889],
-  [0.6588352549067005, 0.6300104042707274, 0.6308571396167474, 0.7628498871463081, 0.8812042447619804, 0.6450891271407698, 0.05702739009473294, 0.9052573432113765, 0.8322529842816521, 0.50204312688312, 0.3866851002627893, 0.8747673220745895, 0.6811185218928401, 0.6610720252813483, 0.8929509703524842, 0.2915251071042961, 0.176811569233057, 0.5263591043980159, 0.1456890777980846, 0.1319463960095295, 0.2805572096643838, 0.1345797208549885, 0.9194135193694579, 0.4431254580098209, 0.4501541421700466, 0.8327692240155901, 0.9249414026465288, 0.7390951865327187, 0.8744353425012321, 0.9003053400605937, 0.8607595493014167, 0.4302521815275474, 0.4286513165586879, 0.9642067966077235, 0.2534046915188728, 0.08697751816092071, 0.8792501564264749, 0.629642009566426, 0.6314100395448802, 0.7743277052937813, 0.9104949339617914, 0.840440805697928, 0.5404779055776763, 0.9347773671807053, 0.38755746509272, 0.803369306230527, 0.8966425612886076, 0.7886475139801737, 0.8907941079713984, 0.9190014978832025, 0.3522378332471661, 0.1809014504433939, 0.7336944853537225, 0.679888350179917, 0.1899336275352233, 0.791565555728643, 0.1067866556887754, 0.8860612799729447, 0.9367096223134744, 0.8639495448862111, 0.8782437507986685, 0.8302753492657331, 0.809246382642996, 0.9489076442875167, 0.6454229523694828, 0.04155980960796609, 0.8665041382416315, 0.1619827626792043, 0.5565828858468974, 0.3438258751795431, 0.3942275346898335, 0.9283744290898972, 0.6325830460054775, 0.122929910215236, 0.7522797532502616, 0.8972993534299837, 0.4731648184244552, 0.7708474985702127, 0.1508465096375764, 0.5295553683583388, 0.8547957966471971, 0.7024691755465428, 0.4684299719444062, 0.2244610051764785, 0.06738333747301979, 0.9145680765086048, 0.8503190574296829, 0.8699211983668487, 0.9075726506652723, 0.8125612641935661, 0.1324109903321076, 0.8515026484303992, 0.8666935506701156, 0.9245019813561807, 0.5361574183136518, 0.8308943234035726, 0.7647222555512423, 0.9159763441092864, 0.5190913963288092, 0.8928229399251451, 0.5707529496400237, 0.9343160770300315, 0.2547839947945623, 0.8913151216228844, 0.223496387182918, 0.9013900066737581, 0.126912980063931, 0.0938116230998244, 0.8835051043478275, 0.6624762956118966, 0.6292629647931889, 0.2299240837554979, 0.9695268312861339, 0.2534046915188728, 0.5777582640025832, 0.5191726594909567, 0.9265362606441389, 0.2079933538642454, 0.9349466692539032, 0.3655144546780216, 0.1493401333693624, 0.4664213351146896, 0.5331210003016799, 0.8598519162876399, 0.4720884356129527, 0.8952518575745732, 0.7912019413079115, 0.1429432971101487, 0.7981491417404037, 0.7282408814095576, 0.9567712858079624, 0.8212946734056131, 0.6074315581830233, 0.7856999935768023, 0.1372238635707822, 0.8761504406261441, 0.9040762460981876, 0.9081517064494045, 0.9474670754436387, 0.281231292023929, 0.3390927372020315, 0.9480257660647574, 0.8311989201224447, 0.5366551813586112, 0.9375431236313668, 0.9623354548612517, 0.9580572325538602, 0.5752668110481099, 0.9087426219429084, 0.3468515258883331, 0.7120456179760087, 0.8415949727501237, 0.633421707019731, 0.8728889518506465, 0.8967713999817422, 0.2393218619503596, 0.8909502607437078, 0.9247399939031163, 0.7113741304335964, 0.9516574813231364, 0.6065518446899986, 0.5559651751026748, 0.2462092450152424, 0.5251860236577571, 0.8626393300473802, 0.8553625770855506, 0.4554509237222495, 0.09096122393915286, 0.529780817243299, 0.1132163886582516, 0.6816431744145428, 0.9362134283263105, 0.7412706566370515, 0.9244285156386869, 0.8902138302828968, 0.5906194062496973, 0.8830436003628626, 0.8234964935583747, 0.8823463108045396, 0.8452618508291229, 0.07941357187491897, 0.7357914877268877, 0.4290296557540788, 0.7740804045679049, 0.04487007138865241, 0.03997374347326944, 0.912296929053887],
-  [0.2553998737962824, 0.07631735783024095, 0.07897960011085291, 0.2207949512078856, 0.1016511838719186, 0.3545810650329531, 0.942970225868031, 0.09126771959008544, 0.002046905469766074, 0.004844626977622985, 0.001636702104588283, 0.001975464699602527, 0.002152693042850789, 0.002886097143871596, 0.01079128801224668, 0.0007538852377919047, 0.0001167702235517668, 0.00435688803390722, 5.1002818324778e-05, 0.0001729815043981829, 0.0006733597429191042, 0.0001443357116525265, 0.07385327143180669, 0.0005326734633262727, 0.001075818641876393, 0.05550862949184748, 0.01130092204396166, 0.006479924965262574, 0.1131515866965035, 0.03553527069217096, 0.07275848957278573, 0.001887435176864453, 0.001200647365981756, 0.01863134658795579, 0.001526263597340909, 0.9130181414757098, 0.01529451230761291, 0.07406068052814456, 0.07981696354496427, 0.2235332913352734, 0.08049189368026742, 0.02375572480235134, 0.002419858768391037, 0.03472005251374328, 0.002040716203898256, 0.1956996753012791, 0.05210174980806165, 0.01007955713816182, 0.08751965344976946, 0.07580785714157701, 0.6473777484864973, 0.8190782985420806, 0.0009888467962190556, 0.3173746991954007, 0.8100230708593901, 0.2059874266021218, 0.8932029257335347, 0.03707216917959535, 0.02073986159084442, 0.05640118328947497, 0.1118875137069056, 0.1657372235194127, 0.004306755200965905, 0.02494405362719899, 0.01470587181551327, 1.31347178174259e-05, 0.01265072157945855, 6.372616369940412e-05, 0.003505852925021835, 0.001514115485064287, 0.004276708894825967, 0.03469682994516703, 0.102862828255405, 2.159774127705953e-05, 0.2425074865136805, 0.07643882230721545, 0.5264885468158881, 0.01482016511740909, 0.8491495420529105, 0.0008676286302631026, 0.00395103663354991, 0.01025282755289429, 0.001951938899600739, 0.0004129809964198562, 0.9326150727325982, 0.07482081888756961, 0.08063891833366137, 0.007803525559271599, 0.08299124096650871, 0.01176323345165673, 0.0001148391665040469, 0.1415442010888649, 0.1184510092537426, 0.06488130463577248, 0.001550345475611415, 0.1621292281987863, 0.006434883592133867, 0.0390944435218161, 0.001627184406719129, 0.02695925261158226, 0.002018274757312532, 0.02381130151757035, 0.0003784733668262425, 0.004533273133334742, 0.0006394216911327579, 0.05707727078425542, 3.43117576046495e-05, 3.507664767224504e-05, 0.1091002579265486, 0.008836026438070649, 0.3677294436546928, 0.0004060643436808472, 0.01575162869039373, 0.001526263597340909, 0.4219583389755819, 0.005542578428455856, 0.005739546293110378, 0.0003624399383724484, 0.01736517527853375, 0.0008387460506655657, 4.277324451437318e-05, 0.0002700419616530316, 0.006712592937335689, 0.01028954029981052, 0.002030807924387894, 0.09983720766549499, 0.2034716659023486, 0.0001644672248535993, 0.02373313968558726, 0.009860080906007207, 0.0227960413734721, 0.02732853212541473, 0.002407184545829678, 0.01262385153017814, 3.874491145169847e-05, 0.0386658754248187, 0.009490169270680476, 0.03557873332422891, 0.04048929922354462, 0.7186559291889745, 0.6608153875038184, 0.02284045048769326, 0.1643459715101531, 0.4629114428923355, 0.0520022778318248, 0.00880261940483151, 0.02815401462621663, 0.005636571493453016, 0.002225131068309814, 0.0005875629986705686, 0.2871815978825973, 0.009960093789229935, 0.001978717880497971, 0.01954337296283469, 0.05074400224223814, 0.0001119556755373595, 0.01697913254226044, 0.02257472162772266, 0.2876662719239387, 0.03032576686210087, 0.3930484182499576, 0.003794690851895586, 0.0006771744930604194, 0.007190580867317107, 0.1309916798306492, 0.02650961718268966, 0.5444148300203245, 0.0001369692775655127, 0.4697846564030937, 2.614494296533173e-05, 0.007232856266002665, 0.0412637181315732, 0.007473307120980099, 0.05287411942419848, 0.10281142388182, 0.4081340340910627, 0.01508529183000272, 0.1746159553524696, 0.005358535051338847, 0.1515801234952836, 9.36372282825981e-05, 0.00127450690507435, 0.001925188529169687, 0.01002087345566931, 1.656111121114513e-05, 2.628855622720807e-06, 0.05898063972005398] 
+[0.6590420682141636, 0.6295262952117998, 0.6303856865370306, 0.7651708815907992, 0.8822084774809541, 0.6463878945255449, 0.05670925821127412, 0.9065880565181345, 0.8313877625727055, 0.5008097537233324, 0.3827028155918334, 0.8741668571674565, 0.6785611443171407, 0.6592269988543858, 0.8934109043144369, 0.2898485544301485, 0.1752690860478696, 0.5237553031185891, 0.1438583959125483, 0.1310481754808935, 0.2782000142626717, 0.1326603115533762, 0.9202844322281382, 0.4423979179896382, 0.4479578734222657, 0.8331602216928046, 0.925163725370258, 0.7381010022271582, 0.8760396800736433, 0.9007107726896093, 0.8616719133142033, 0.429318638666869, 0.427221193776739, 0.9646106201610571, 0.2521158347717649, 0.08679404343699054, 0.8791675458832844, 0.629151430043082, 0.6309399626011464, 0.7773892793695361, 0.911747762174925, 0.8406524716876108, 0.5384380892981991, 0.9355402336009301, 0.3834858892943144, 0.8056298368250397, 0.8976220110421324, 0.7877202353863311, 0.8919996668839869, 0.919705598959816, 0.3525779358136313, 0.1806859168593065, 0.7335566438646067, 0.6837189356889364, 0.1887528496215639, 0.7930815508520332, 0.1064227299060983, 0.8862924753363561, 0.9370309940701347, 0.8646550974880528, 0.8790909163593805, 0.8334691601726457, 0.8090002820495114, 0.9493479317981891, 0.643279137499093, 0.04082058885229868, 0.8658866867002749, 0.160001761068033, 0.5542784925796955, 0.3412581912517945, 0.3915136973392245, 0.9289484814870412, 0.6321791898264182, 0.1215195300290875, 0.7545656400684584, 0.8987389979543963, 0.4741316117530976, 0.7694841080735656, 0.1503068855058662, 0.527100842548382, 0.8538952483000255, 0.7010382439666797, 0.4675076722121743, 0.2219386697671104, 0.0673963342718981, 0.916001585621829, 0.851572145102629, 0.8697783185834219, 0.9093904942772238, 0.8122276217738864, 0.1302818240907984, 0.8532983433628731, 0.8681669010866113, 0.925606685349572, 0.5332251731370758, 0.8326655111978812, 0.7636853657679995, 0.9166475703028997, 0.5177756387836665, 0.8929964503319083, 0.5684339147070099, 0.9346722912515401, 0.253062138148439, 0.8907895575117083, 0.2217508534552121, 0.902154690335745, 0.1255139411661346, 0.09284933655314186, 0.8854084148486325, 0.6591556884674684, 0.6311072237304626, 0.2275766794873746, 0.9698271069023099, 0.2521158347717649, 0.5797595970139706, 0.5159911744822987, 0.9264165580831163, 0.2064195936853306, 0.9351559780006461, 0.3618435718977148, 0.1476766883148213, 0.4643540168121424, 0.5299736797978728, 0.859593764540069, 0.4684915458291029, 0.8960255042184201, 0.791713911497042, 0.1407003329894658, 0.7970189537714087, 0.7264738512114783, 0.9572821678630518, 0.8206779898514492, 0.6048512888727763, 0.7848399280841521, 0.1354695705305201, 0.876512495275497, 0.9037407480457214, 0.9086423009749222, 0.9481679440397182, 0.2817024062858178, 0.3391850707553216, 0.9483975919621521, 0.8327579573392221, 0.5363393536531582, 0.9386144376156097, 0.9625243792623214, 0.9585332162064392, 0.5728399516322858, 0.908818065422233, 0.3460193016854158, 0.7147896212869103, 0.8413769024552699, 0.6332901745005061, 0.8731249413033565, 0.897415228319015, 0.2375555670442387, 0.8911247286857046, 0.9250752271724603, 0.7129647593506242, 0.9522882419163263, 0.608915685087283, 0.5539252055276097, 0.244585468659001, 0.5218228361825763, 0.8651698499508601, 0.8546403232680236, 0.4567005108355059, 0.08986346650023433, 0.5309401738889369, 0.1119994110349295, 0.6793255623714524, 0.9367017183901303, 0.7398006182861786, 0.9254944521997526, 0.8914543038239114, 0.5915451341046691, 0.8828230293771862, 0.8253644148278831, 0.8818849284868315, 0.8469122381742665, 0.07842884343421058, 0.7347338880160806, 0.4273250135054775, 0.7729749543377356, 0.0441287679444981, 0.03939360753340206, 0.913447436171324],
+  [0.2548059128700653, 0.07575394180863826, 0.07841949610132874, 0.2183464962709025, 0.1006670759949091, 0.3532824486382332, 0.9432883712267999, 0.08992863388772611, 0.001974472834862997, 0.004693076713445249, 0.001541968400693699, 0.001906321637908711, 0.002067575829753574, 0.00277290738529337, 0.01061698837402555, 0.0007205145207030305, 0.0001106812552033643, 0.004194917695983845, 4.785648754161972e-05, 0.0001649795194617654, 0.0006385642594312933, 0.0001343596935877354, 0.07298534944525173, 0.0005142400827715665, 0.001033196057862116, 0.05443053130322333, 0.0110279017015023, 0.006295099828154693, 0.1114827388456945, 0.03464971093576047, 0.07148060525787228, 0.001826796216604849, 0.00115176751565306, 0.01826368404588752, 0.00146700810621202, 0.9132016262738031, 0.01487306905206791, 0.07350227892135838, 0.07924660568572314, 0.220448971120644, 0.07921591222230702, 0.02325115413105475, 0.002338365525084445, 0.03390933129962609, 0.001924569061516209, 0.1934359057193492, 0.05066433063901594, 0.009791168493266059, 0.0862360189071557, 0.07511822878668947, 0.647037069082898, 0.8192938839855993, 0.0009524952524965365, 0.3135108983306193, 0.8112041978408995, 0.2044657628960425, 0.893566918656112, 0.03661091936124507, 0.02018364167430978, 0.05510274371092211, 0.1110470336593714, 0.1625056864787209, 0.004220667036113341, 0.02449010906318826, 0.01420146105439874, 1.218239057009355e-05, 0.01217566565790062, 5.967256014800797e-05, 0.003377588823932065, 0.00144201790563899, 0.004106787320422196, 0.03409211571956682, 0.1023170939677617, 2.024940947348321e-05, 0.2401962030926485, 0.07465230914721981, 0.5255210916473219, 0.01430992878722106, 0.8496891988811796, 0.0008263657392074046, 0.003811994607524969, 0.009899762571679077, 0.001897163664766378, 0.0003895444412942559, 0.9326020754649009, 0.07332124086182071, 0.07876708381532721, 0.007593167507380162, 0.08109390902694207, 0.01150220284122374, 0.0001068954307611358, 0.1397126431020345, 0.116897243588615, 0.06373683228264838, 0.001477063473647544, 0.1603419073791432, 0.006252946692834623, 0.03822377101065472, 0.001564529597146644, 0.02630865621376109, 0.001937385068883362, 0.02344264926816365, 0.0003608048117606154, 0.00439652934760935, 0.0006132092840562507, 0.05609506471149763, 3.222975570899437e-05, 3.298447131704098e-05, 0.1071408275827107, 0.008389592920554495, 0.3658713419592576, 0.0003836644318942201, 0.0154418969896028, 0.00146700810621202, 0.4199566326828601, 0.005290779887023487, 0.005601165990336834, 0.0003465676054746508, 0.01695068770483135, 0.0007888334817280919, 4.019755297084685e-05, 0.000257233239696642, 0.00641016986370742, 0.01007947552395773, 0.001926194304301807, 0.0990579122227388, 0.2029715521525786, 0.0001534711152938896, 0.022853667173833, 0.009503019344917743, 0.02221715661078068, 0.02648623197833246, 0.002298513739015609, 0.0123015920280185, 3.62206489591339e-05, 0.03776177341422494, 0.009202034016170254, 0.03475226912293359, 0.03972671492314912, 0.7181840822596014, 0.6607229937135094, 0.02225500720744548, 0.1627674796251149, 0.4632296040490493, 0.05087234197325657, 0.008597944062751987, 0.02764264895090687, 0.005444288019734069, 0.002166915494793255, 0.0005652492294085686, 0.2844331023365414, 0.009716360525106502, 0.001933172785401054, 0.01916140342833262, 0.0498368157991825, 0.0001061400191817122, 0.01668105211625924, 0.02186219683342442, 0.286075737255138, 0.02957656482283962, 0.3906823731474425, 0.003646619369260028, 0.0006503201097074237, 0.006866695803878058, 0.128411385510635, 0.02529046263357605, 0.5431649595823219, 0.0001295968024717857, 0.4686242786669976, 2.457268967041805e-05, 0.006951097038262886, 0.040741109168412, 0.007231150071612593, 0.05161065858320939, 0.1015436964867685, 0.4072081440937386, 0.01471997957948087, 0.1727426049271184, 0.005170073067439303, 0.1499368842971476, 8.824447363230611e-05, 0.001225387797452016, 0.001859485148828998, 0.00973084716656689, 1.536928208044389e-05, 2.436480520943331e-06, 0.05762972409721398],
+  [0.08615201891577115, 0.294719762979562, 0.2911948173616405, 0.01648262213829845, 0.01712444652413669, 0.0003296568362220048, 2.370561926018262e-06, 0.003483309594139364, 0.1666377645924315, 0.4944971695632224, 0.615755216007473, 0.1239268211946347, 0.3193712798531057, 0.3380000937603209, 0.09597210731153759, 0.7094309310491486, 0.8246202326969269, 0.4720497791854272, 0.8560937475999101, 0.8687868449996448, 0.721161421477897, 0.8672053287530361, 0.006730218326610161, 0.5570878419275902, 0.5510089305198722, 0.1124092470039721, 0.06380837292823981, 0.255603897944687, 0.01247758108066221, 0.06463951637463027, 0.06684748142792442, 0.5688545651165263, 0.571627038707608, 0.01712569579305543, 0.7464171571220229, 4.330289206334114e-06, 0.1059593850646479, 0.2973462910355595, 0.2898134317131303, 0.002161749509819791, 0.009036325602767977, 0.1360963741813345, 0.4592235451767165, 0.0305504350994439, 0.6145895416441695, 0.000934257455611137, 0.0517136583188517, 0.2024885961204029, 0.02176431420885732, 0.00517617225349442, 0.0003849951034706128, 2.019915509414192e-05, 0.2654908608828966, 0.002770165980444209, 4.295253753668126e-05, 0.002452686251924292, 1.035143778976878e-05, 0.07709660530239872, 0.04278536425555551, 0.08024215880102509, 0.009862049981248162, 0.004025153348633382, 0.1867790509143752, 0.02616195913862262, 0.3425194014465082, 0.9591672287571313, 0.1219376476418244, 0.839938566371819, 0.4423439185963724, 0.6572997908425664, 0.6043795153403534, 0.03695940279339195, 0.2655037162058199, 0.878460220561439, 0.00523815683889315, 0.02660869289838387, 0.0003472965995805571, 0.2162059631392134, 3.915612954198521e-06, 0.4720727917124106, 0.1422927570924497, 0.2890619934616412, 0.5305951641230594, 0.7776717857915953, 1.590263200947959e-06, 0.01067717351635039, 0.06966077108204383, 0.122628513909198, 0.009515596695834129, 0.1762701753848898, 0.8696112804784405, 0.006989013535092396, 0.01493585532477367, 0.01065648236777971, 0.4652977633892768, 0.0069925814229755, 0.2300616875391659, 0.04512865868644578, 0.4806598316191869, 0.08069489345433063, 0.4296287002241067, 0.04188505948029637, 0.7465770570398003, 0.1048139131406824, 0.7776359372607317, 0.04175024495275743, 0.8744538290781564, 0.9071176789755411, 0.007450757568656826, 0.3324547186119771, 0.00302143431027981, 0.7720396560807312, 0.01473099610808742, 0.7464171571220229, 0.0002837703031692917, 0.4787180456306779, 0.06798227592654692, 0.7932338387091947, 0.04789333429452255, 0.6373675946205571, 0.8522831141322078, 0.5353887499481609, 0.4636161503384199, 0.1303267599359733, 0.5295822598665952, 0.004916583558841202, 0.00531453635037949, 0.8591461958952403, 0.1801273790547582, 0.2640231294436038, 0.02050067552616764, 0.1528357781702183, 0.3928501973882081, 0.2028584798878294, 0.8644942088205207, 0.08572573131027804, 0.08705721793810832, 0.05660542990214418, 0.01210534103713276, 0.0001135114545804652, 9.193553116902996e-05, 0.02934740083040224, 0.004474563035662842, 0.0004310422977926142, 0.01051322041113382, 0.0288776766749267, 0.01382413484265393, 0.4217157603479801, 0.08901501908297373, 0.6534154490851757, 0.0007772763765484529, 0.1489067370196236, 0.3647766527140929, 0.1077136552683109, 0.0527479558818025, 0.7623382929365795, 0.09219421919803619, 0.05306257599411537, 0.0009595033942378324, 0.01813519326083406, 0.0004019417652746559, 0.4424281751031302, 0.7547642112312916, 0.4713104680135458, 0.006418764538505052, 0.1200692140984003, 0.000134529582172131, 0.9100069366972939, 0.0004355474440655466, 0.8879760162754001, 0.3137233405902848, 0.0225571724414577, 0.2529682316422089, 0.0228948892170381, 0.007001999689320019, 0.001246721801592243, 0.1024569910433331, 0.001892980244998611, 0.112944998445729, 0.00315087752858573, 0.9214829120921572, 0.2640407241864675, 0.5708155013456935, 0.2172941984956976, 0.9558558627734214, 0.960603955986077, 0.02892283973146204] 
   ],
  "analysis":{
    "authors":"Sergei L Kosakovsky Pond",
    "citation":"*Gene-wide identification of episodic selection*, Mol Biol Evol. 32(5):1365-71",
    "contact":"spond@temple.edu",
-   "info":"BUSTED (branch-site unrestricted statistical test of episodic diversification) uses a random effects branch-site model fitted \njointly to all or a subset of tree branches in order to test for alignment-wide evidence of episodic diversifying selection. \nAssuming there is evidence of positive selection (i.e. there is an omega > 1),  BUSTED will also perform a quick evidence-ratio \nstyle analysis to explore which individual sites may have been subject to selection. v2.0 adds support for synonymous rate variation, \nand relaxes the test statistic to 0.5 (chi^2_0 + chi^2_2). Version 2.1 adds a grid search for the initial starting point.\nVersion 2.2 changes the grid search to LHC, and adds an initial search phase to use adaptive Nedler-Mead. Version 3.0 implements the option\nfor branch-site variation in synonymous substitution rates\n",
+   "info":"BUSTED (branch-site unrestricted statistical test of episodic diversification) uses a random effects branch-site model fitted \njointly to all or a subset of tree branches in order to test for alignment-wide evidence of episodic diversifying selection. \nAssuming there is evidence of positive selection (i.e. there is an omega > 1),  BUSTED will also perform a quick evidence-ratio \nstyle analysis to explore which individual sites may have been subject to selection. v2.0 adds support for synonymous rate variation, \nand relaxes the test statistic to 0.5 (chi^2_0 + chi^2_2). Version 2.1 adds a grid search for the initial starting point.\nVersion 2.2 changes the grid search to LHC, and adds an initial search phase to use adaptive Nedler-Mead. Version 3.0 implements the option\nfor branch-site variation in synonymous substitution rates. Version 3.1 adds HMM auto-correlation option for SRV, and binds SRV distributions for multiple branch sets\n",
    "requirements":"in-frame codon alignment and a phylogenetic tree (optionally annotated with {})",
-   "version":"3.0"
+   "version":"3.1"
   },
  "background":0,
  "branch attributes":{
    "0":{
      "Baboon":{
-       "MG94xREV with separate rates for branch sets":0.001771850913718116,
-       "Nucleotide GTR":0.00167976779100812,
-       "constrained":0.0005055252388761481,
+       "MG94xREV with separate rates for branch sets":0.001772434847524003,
+       "Nucleotide GTR":0.001680040630127455,
+       "constrained":0.001513413708231178,
        "original name":"Baboon",
-       "unconstrained":0.0005398732671668005
+       "unconstrained":0.00161713005248515
       },
      "Cat":{
-       "MG94xREV with separate rates for branch sets":0.2738959056554072,
-       "Nucleotide GTR":0.266075486389923,
-       "constrained":0.1152712488116292,
+       "MG94xREV with separate rates for branch sets":0.2735065373507703,
+       "Nucleotide GTR":0.2660909938917123,
+       "constrained":0.3466844629529476,
        "original name":"Cat",
-       "unconstrained":0.120218071527276
+       "unconstrained":0.3607268493024173
       },
      "Chimp":{
-       "MG94xREV with separate rates for branch sets":0.001827968855137289,
-       "Nucleotide GTR":0.001817801565830578,
-       "constrained":0.0006181497274348637,
+       "MG94xREV with separate rates for branch sets":0.001828401123834132,
+       "Nucleotide GTR":0.001818373670119325,
+       "constrained":0.001854421055569225,
        "original name":"Chimp",
-       "unconstrained":0.0006183542388399873
+       "unconstrained":0.001853794709397617
       },
      "Cow":{
-       "MG94xREV with separate rates for branch sets":0.2477119781238836,
-       "Nucleotide GTR":0.2480176045457076,
-       "constrained":0.1036665344622347,
+       "MG94xREV with separate rates for branch sets":0.2477981038577003,
+       "Nucleotide GTR":0.2481025999892287,
+       "constrained":0.3115800338446564,
        "original name":"Cow",
-       "unconstrained":0.1088268022245659
+       "unconstrained":0.3266266518611717
       },
      "Horse":{
-       "MG94xREV with separate rates for branch sets":0.211203801568566,
-       "Nucleotide GTR":0.2090856782081004,
-       "constrained":0.08236651201101133,
+       "MG94xREV with separate rates for branch sets":0.21116782461044,
+       "Nucleotide GTR":0.2090310577070883,
+       "constrained":0.2473423214593362,
        "original name":"Horse",
-       "unconstrained":0.08564084427400141
+       "unconstrained":0.2568895651944081
       },
      "Human":{
        "MG94xREV with separate rates for branch sets":0,
@@ -77,68 +77,68 @@
        "unconstrained":0
       },
      "Mouse":{
-       "MG94xREV with separate rates for branch sets":0.1200702443392807,
-       "Nucleotide GTR":0.1181301915748399,
-       "constrained":0.04601717170435755,
+       "MG94xREV with separate rates for branch sets":0.1200804161847832,
+       "Nucleotide GTR":0.1180171198334285,
+       "constrained":0.1381882260320684,
        "original name":"Mouse",
-       "unconstrained":0.04942545223877414
+       "unconstrained":0.1482500840848965
       },
      "Node1":{
-       "MG94xREV with separate rates for branch sets":0.2837967450491412,
-       "Nucleotide GTR":0.2767871391397028,
-       "constrained":0.1295742765519239,
-       "unconstrained":0.1515367890887531
+       "MG94xREV with separate rates for branch sets":0.2841417945012228,
+       "Nucleotide GTR":0.2767237570684924,
+       "constrained":0.3893703941610758,
+       "unconstrained":0.4535373691584812
       },
      "Node12":{
-       "MG94xREV with separate rates for branch sets":0.01788296579298991,
-       "Nucleotide GTR":0.01784443144961206,
-       "constrained":0.005338125135456628,
-       "unconstrained":0.00572208893382143
+       "MG94xREV with separate rates for branch sets":0.01789005959388253,
+       "Nucleotide GTR":0.01784803874223016,
+       "constrained":0.01603697675468384,
+       "unconstrained":0.01716581823757766
       },
      "Node2":{
-       "MG94xREV with separate rates for branch sets":0.06423714540466627,
-       "Nucleotide GTR":0.06616183769400197,
-       "constrained":0.02253286838656328,
-       "unconstrained":0.02248978054488407
+       "MG94xREV with separate rates for branch sets":0.06425321743363792,
+       "Nucleotide GTR":0.06613162123865737,
+       "constrained":0.06766882319669908,
+       "unconstrained":0.06748821329187271
       },
      "Node3":{
-       "MG94xREV with separate rates for branch sets":0.1017201477652066,
-       "Nucleotide GTR":0.09890202668045614,
-       "constrained":0.04280347934583096,
-       "unconstrained":0.04618990784049085
+       "MG94xREV with separate rates for branch sets":0.1017634409613201,
+       "Nucleotide GTR":0.09886326330774685,
+       "constrained":0.128627313187861,
+       "unconstrained":0.1385358286963005
       },
      "Node8":{
-       "MG94xREV with separate rates for branch sets":0.1096720572321177,
-       "Nucleotide GTR":0.10624077635158,
-       "constrained":0.04415239867414091,
-       "unconstrained":0.04768889036449767
+       "MG94xREV with separate rates for branch sets":0.1095532710088725,
+       "Nucleotide GTR":0.106239268140425,
+       "constrained":0.1326559254556453,
+       "unconstrained":0.1430782720540034
       },
      "Node9":{
-       "MG94xREV with separate rates for branch sets":0.02591275475412757,
-       "Nucleotide GTR":0.02566524291670843,
-       "constrained":0.00997308939110993,
-       "unconstrained":0.009841415288506062
+       "MG94xREV with separate rates for branch sets":0.02590764371262369,
+       "Nucleotide GTR":0.02566573875750134,
+       "constrained":0.02991066003065707,
+       "unconstrained":0.02952913741456189
       },
      "Pig":{
-       "MG94xREV with separate rates for branch sets":0.1928073761020463,
-       "Nucleotide GTR":0.1871746592118726,
-       "constrained":0.07816490289585476,
+       "MG94xREV with separate rates for branch sets":0.1925158663261413,
+       "Nucleotide GTR":0.1871893456388788,
+       "constrained":0.2351007649069627,
        "original name":"Pig",
-       "unconstrained":0.08275992348314189
+       "unconstrained":0.248176820169511
       },
      "Rat":{
-       "MG94xREV with separate rates for branch sets":0.06698958986289986,
-       "Nucleotide GTR":0.06656862018951525,
-       "constrained":0.02277034233250765,
+       "MG94xREV with separate rates for branch sets":0.06699144002108472,
+       "Nucleotide GTR":0.06661283005976348,
+       "constrained":0.06832918896283274,
        "original name":"Rat",
-       "unconstrained":0.02372534359054489
+       "unconstrained":0.07114161288708017
       },
      "RhMonkey":{
-       "MG94xREV with separate rates for branch sets":0.003717482368324115,
-       "Nucleotide GTR":0.003775504255522691,
-       "constrained":0.001359450941376631,
+       "MG94xREV with separate rates for branch sets":0.003716234330029482,
+       "Nucleotide GTR":0.003775170135617877,
+       "constrained":0.004078975866589158,
        "original name":"RhMonkey",
-       "unconstrained":0.00132482447204072
+       "unconstrained":0.003977618821878279
       }
     },
    "attributes":{
@@ -174,35 +174,35 @@
   },
  "fits":{
    "Constrained model":{
-     "AIC-c":6918.851822592964,
-     "Log Likelihood":-3419.573452280089,
+     "AIC-c":6918.865252134614,
+     "Log Likelihood":-3419.580167050914,
      "Rate Distributions":{
        "Synonymous site-to-site rates":{
          "0":{
-           "proportion":0.3289898788632067,
-           "rate":0.3124849036133048
+           "proportion":0.3286044813984554,
+           "rate":0.3114745230555425
           },
          "1":{
-           "proportion":0.5748197734913485,
-           "rate":1.039520868895482
+           "proportion":0.5759073485616787,
+           "rate":1.038727366194607
           },
          "2":{
-           "proportion":0.09619034764544485,
-           "rate":3.115265578623139
+           "proportion":0.09548817003986594,
+           "rate":3.135858111155513
           }
         },
        "Test":{
          "0":{
            "omega":0,
-           "proportion":0.02093092071081848
+           "proportion":0.1610337459523823
           },
          "1":{
-           "omega":0,
-           "proportion":0.1387433808480476
+           "omega":0.9239856235614761,
+           "proportion":0
           },
          "2":{
            "omega":1,
-           "proportion":0.8403256984411339
+           "proportion":0.8389662540476177
           }
         }
       },
@@ -210,129 +210,129 @@
      "estimated parameters":39
     },
    "MG94xREV with separate rates for branch sets":{
-     "AIC-c":6997.089050462658,
+     "AIC-c":6997.104847699299,
      "Equilibrium frequencies":      [
-[0.04875339327772683],
-      [0.03982858547830345],
-      [0.04946803524790992],
-      [0.04152216138298744],
-      [0.01811683453600613],
-      [0.01480036248560469],
-      [0.0183823965708893],
-      [0.01542969784826435],
-      [0.01894694796506697],
-      [0.01547851515238824],
-      [0.01922467805342367],
-      [0.01613668666381816],
-      [0.02832099415740372],
-      [0.02313654621336914],
-      [0.02873613184734657],
-      [0.02412034959764736],
-      [0.01662182431200483],
-      [0.01357902918971745],
-      [0.01686547203528639],
-      [0.01415643148428886],
-      [0.006176695005242439],
-      [0.005045987744654046],
-      [0.006267234867003878],
-      [0.005260551308914496],
-      [0.006459711194459957],
-      [0.005277194922783805],
-      [0.006554399593040238],
-      [0.005501589790395056],
-      [0.009655668202293983],
-      [0.007888099278638223],
-      [0.009797203904398108],
-      [0.008223514024394991],
-      [0.03326722643528176],
-      [0.02717732003095303],
-      [0.03375486749252685],
-      [0.02833294365668738],
-      [0.01236215156074466],
-      [0.01009913314808799],
-      [0.01254335971371867],
-      [0.01052856463184265],
-      [0.01292858539344675],
-      [0.0105618754683007],
-      [0.0131180965046964],
-      [0.01101098350431497],
-      [0.0193250328267319],
-      [0.01578738770911659],
-      [0.0196083049972345],
-      [0.01645869298147252],
-      [0.01962343746171723],
-      [0.02045785777700414],
-      [0.008926115885166477],
-      [0.007292098982657142],
-      [0.009056957588961733],
-      [0.007602170831388156],
-      [0.007626222986467745],
-      [0.009471947420992787],
-      [0.007950502328516303],
-      [0.01395367801862353],
-      [0.01139931439306339],
-      [0.01415821524731906],
-      [0.01188403168729233] 
+[0.04876086397632926],
+      [0.03982224127745371],
+      [0.0494959405650269],
+      [0.04152830682371345],
+      [0.01810345074594235],
+      [0.01478480742075003],
+      [0.01837636270304883],
+      [0.01541821854326533],
+      [0.01892910005547028],
+      [0.01545910240515689],
+      [0.01921445878706794],
+      [0.01612140169177368],
+      [0.02829747763884322],
+      [0.02311011106415996],
+      [0.02872406592369408],
+      [0.02410019507229243],
+      [0.01663805943190806],
+      [0.01358804506433061],
+      [0.01688888041768248],
+      [0.01417018446135155],
+      [0.006177213955434187],
+      [0.005044834822351987],
+      [0.006270336287397383],
+      [0.00526096577332031],
+      [0.006458939937330408],
+      [0.005274916061901906],
+      [0.006556309326397028],
+      [0.005500904159606446],
+      [0.009655594186286731],
+      [0.007885574003572761],
+      [0.009801153568494354],
+      [0.008223407979974132],
+      [0.03327785448210915],
+      [0.02717750758119989],
+      [0.03377952261833742],
+      [0.02834184710178207],
+      [0.01235507229404208],
+      [0.01009019590244688],
+      [0.01254132667213156],
+      [0.01052248035033209],
+      [0.01291855364640413],
+      [0.01055038238273567],
+      [0.01311330258173711],
+      [0.01100238215235291],
+      [0.01931219560697892],
+      [0.0157719705998612],
+      [0.01960332955558842],
+      [0.01644767379420349],
+      [0.01965132601881859],
+      [0.02049322866376102],
+      [0.008933621043463411],
+      [0.007295949736387736],
+      [0.009068296583349953],
+      [0.007608523013862737],
+      [0.007628698224327205],
+      [0.009481877006094248],
+      [0.00795552712159237],
+      [0.01396413011303752],
+      [0.01140428846505027],
+      [0.01417464125436193],
+      [0.01189287130232129] 
       ],
-     "Log Likelihood":-3467.004808147542,
+     "Log Likelihood":-3467.012706765863,
      "Rate Distributions":{
        "non-synonymous/synonymous rate ratio for *test*":        [
-[0.9950576192409499, 1] 
+[0.9959842858928788, 1] 
         ]
       },
      "display order":1,
      "estimated parameters":31
     },
    "Nucleotide GTR":{
-     "AIC-c":7112.85745601076,
+     "AIC-c":7112.857310169033,
      "Equilibrium frequencies":      [
 [0.3592490842490842],
       [0.181959706959707],
       [0.240018315018315],
       [0.2187728937728937] 
       ],
-     "Log Likelihood":-3532.321297387654,
+     "Log Likelihood":-3532.32122446679,
      "Rate Distributions":{
-       "Substitution rate from nucleotide A to nucleotide C":0.5497129763145497,
+       "Substitution rate from nucleotide A to nucleotide C":0.5501644800943087,
        "Substitution rate from nucleotide A to nucleotide G":1,
-       "Substitution rate from nucleotide A to nucleotide T":0.264666902964203,
-       "Substitution rate from nucleotide C to nucleotide G":0.4916303643305098,
-       "Substitution rate from nucleotide C to nucleotide T":1.027924764411573,
-       "Substitution rate from nucleotide G to nucleotide T":0.304615404570875
+       "Substitution rate from nucleotide A to nucleotide T":0.2647746107611847,
+       "Substitution rate from nucleotide C to nucleotide G":0.4917423221832032,
+       "Substitution rate from nucleotide C to nucleotide T":1.02837595903795,
+       "Substitution rate from nucleotide G to nucleotide T":0.304509117524575
       },
      "display order":0,
      "estimated parameters":24
     },
    "Unconstrained model":{
-     "AIC-c":6910.766610587704,
-     "Log Likelihood":-3414.486640449675,
+     "AIC-c":6910.776988890891,
+     "Log Likelihood":-3414.491829601268,
      "Rate Distributions":{
        "Synonymous site-to-site rates":{
          "0":{
-           "proportion":0.2645541257391169,
-           "rate":0.2747941124675511
+           "proportion":0.2655037162058198,
+           "rate":0.2749303122566129
           },
          "1":{
-           "proportion":0.6325830460054784,
-           "rate":0.9734675888351726
+           "proportion":0.6321791898264187,
+           "rate":0.9740711294478059
           },
          "2":{
-           "proportion":0.1028628282554047,
-           "rate":3.028333913894314
+           "proportion":0.1023170939677615,
+           "rate":3.041695877803997
           }
         },
        "Test":{
          "0":{
            "omega":0,
-           "proportion":0.04809457608200497
+           "proportion":0.386646389823596
           },
          "1":{
-           "omega":0,
-           "proportion":0.3410012743721951
+           "omega":0.9964438830494696,
+           "proportion":0
           },
          "2":{
-           "omega":1.89363684081788,
-           "proportion":0.6109041495458
+           "omega":1.876622752045829,
+           "proportion":0.613353610176404
           }
         }
       },
@@ -341,7 +341,7 @@
     }
   },
  "input":{
-   "file name":"/tmp/tmp7qHfo2/job_working_directory/000/3/working/./busted_input.fa",
+   "file name":"/tmp/tmpfqvtss8b/job_working_directory/000/3/working/./input.fasta",
    "number of sequences":10,
    "number of sites":187,
    "partition count":1,
@@ -350,8 +350,8 @@
     }
   },
  "test results":{
-   "LRT":10.17362366082671,
-   "p-value":0.003088842014430382
+   "LRT":10.17667489929045,
+   "p-value":0.003084133210483175
   },
  "tested":{
    "0":{
@@ -376,19 +376,19 @@
  "timers":{
    "Constrained BUSTED model fitting":{
      "order":3,
-     "timer":62
+     "timer":70
     },
    "Overall":{
      "order":0,
-     "timer":228
+     "timer":451
     },
    "Preliminary model fitting":{
      "order":1,
-     "timer":3
+     "timer":10
     },
    "Unconstrained BUSTED model fitting":{
      "order":2,
-     "timer":161
+     "timer":370
     }
   }
 }
\ No newline at end of file