Mercurial > repos > iuc > hyphy_sm19

comparison macros.xml @ 8:6cf8d753e93e draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 751182d5067ac8378199058d9152ebfcaeb4c4b5"
author iuc
date Fri, 27 Mar 2020 13:17:03 -0400
parents 1cd3060a8504
children 638942ba8e37
comparison
equal deleted inserted replaced
7:1cd3060a8504 8:6cf8d753e93e
104 <citations> 104 <citations>
105 <citation type="doi">10.1093/molbev/msz197</citation> 105 <citation type="doi">10.1093/molbev/msz197</citation>
106 <yield/> 106 <yield/>
107 </citations> 107 </citations>
108 </xml> 108 </xml>
109 <token name="@VERSION@">2.5.7</token> 109 <token name="@VERSION@">2.5.8</token>
110 <xml name="requirements"> 110 <xml name="requirements">
111 <requirements> 111 <requirements>
112 <requirement type="package" version="@VERSION@">hyphy</requirement> 112 <requirement type="package" version="@VERSION@">hyphy</requirement>
113 <yield/> 113 <yield/>
114 </requirements> 114 </requirements>
115 </xml> 115 </xml>
116 <token name="@HYPHYMPI@">\${GALAXY_MPIRUN:-mpirun -np \${GALAXY_SLOTS:-1}} HYPHYMPI</token> 116 <token name="@HYPHYMPI@">\${GALAXY_MPIRUN:-mpirun -np \${GALAXY_SLOTS:-1}} HYPHYMPI</token>
117 <token name="@CATCH_MPIERR@"><![CDATA[
118 EC=\$? ;
119 if [ \$EC -ne 0 ] ; then
120 cat errors.log.mpinode0 >&2 ;
121 fi ;
122 exit \$EC
123 ]]></token>
117 <token name="@HYPHY_ENVIRONMENT@"><![CDATA[ 124 <token name="@HYPHY_ENVIRONMENT@"><![CDATA[
118 export HYPHY=`which hyphy` && 125 export HYPHY=`which hyphy` &&
119 export HYPHY_PATH=`dirname \$HYPHY` && 126 export HYPHY_PATH=`dirname \$HYPHY` &&
120 export HYPHY_LIB=`readlink -f \$HYPHY_PATH/../lib/hyphy` &&]]></token> 127 export HYPHY_LIB=`readlink -f \$HYPHY_PATH/../lib/hyphy` &&]]></token>
121 <token name="@HYPHY_INVOCATION@"><![CDATA[ 128 <token name="@HYPHY_INVOCATION@"><![CDATA[