Mercurial > repos > iuc > hyphy_strike_ambigs

comparison hyphy_strike_ambigs.xml @ 11:31e7f5a25db3 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit e7a89841d59689e87db592e112f9c8fb5331d954
author iuc
date Thu, 02 Mar 2023 15:15:02 +0000
parents dc8875a13914
children
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10:f5bbd4b34541 11:31e7f5a25db3
1 <?xml version="1.0"?> 1 <tool id="hyphy_strike_ambigs" name="Replace ambiguous codons" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
2 <tool id="hyphy_strike_ambigs" name="Replace ambiguous codons" version="@TOOL_VERSION@">
3 <description>in a multiple alignment using HyPhy</description> 2 <description>in a multiple alignment using HyPhy</description>
4 <macros> 3 <macros>
5 <import>macros.xml</import> 4 <import>macros.xml</import>
6 </macros> 5 </macros>
7 <expand macro="requirements"/> 6 <expand macro="requirements"/>
9 hyphy '$__tool_directory__/scripts/strike-ambigs.bf' 8 hyphy '$__tool_directory__/scripts/strike-ambigs.bf'
10 --alignment '$alignment' --output '$output' 9 --alignment '$alignment' --output '$output'
11 @ERRORS@ 10 @ERRORS@
12 ]]></command> 11 ]]></command>
13 <inputs> 12 <inputs>
14 <param name="alignment" type="data" format="fasta" label="Input alignment" /> 13 <param argument="--alignment" type="data" format="fasta" label="Input alignment" />
15 </inputs> 14 </inputs>
16 <outputs> 15 <outputs>
17 <data name="output" format="fasta" /> 16 <data name="output" format="fasta" />
18 </outputs> 17 </outputs>
19 <tests> 18 <tests>