Mercurial > repos > iuc > hyphy_strike_ambigs

diff test-data/gard-in1.fa @ 0:7c86ceaf523c draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 2742ee3b4e90f65352845265d2f85c4263e0eabb"
author iuc
date Tue, 20 Apr 2021 10:27:46 +0000
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/gard-in1.fa	Tue Apr 20 10:27:46 2021 +0000
@@ -0,0 +1,120 @@
+>BRO1_1
+ATTCTAATTTAAACTATTCT-CTGTTCTTTCATGGGGAAGCAGATTTGGG
+TACCACCCAAGTATTGACTCACCCATCAACAACCGCTATGTATTTCGTAC
+ATTAC-TGCCAGCCACCATGAATATTGTACGGTACCATAAA-TACTTGAC
+CACCTGTAGTACATAAAAACCC-AATCC--ACATCAAAA----CCCCCCC
+CC-CATGCTTACAAGCAAGTACAGCAACCAACCCTCAA-CTATCACACAT
+CAACTGCAACTCCAAAGCCAC-CCCTCACCCAC-TAGGATACCAACAAAC
+CTACCCACCC-TTAACAGTACATAGTACATAAAGCCATTTACCGTACATA
+GCACATTACA-GTCAAATCCCTTCTCGTCCCC-ATGG-ATGACCCCCC-T
+CAGAT-AGGGGTCCCTTGACCACCATCC
+>BRO2
+ATTCTAATTTAAACTATTCT-CTGTTCTTTCATGGGGAAGCAGATTTGGG
+TACCACCCAAGTATTGACTCACCCATCAACAACCGCTATGTATTTCGTAC
+ATTAC-TGCCAGCCACCATGAATATTGTACGGTACCATAAA-TACTTGAC
+CACCTGTAGTACATAAAAACCC-AATCC--ACATCAAAA----CCCCCCC
+CC-CATGCTTACAAGCAAGTACAGCAACCAACCCTCAA-CTATCACACAT
+CAACTGCAACCCCAAAGCCAC-CCCTCACCCAC-TAGGATACCAACAAAC
+CTACCCACCC-TTAACAGTACATAGTGCATAAAGCCATTTACCGTACATA
+GCACATTATA-GTCAAATCCCTTCTCGTCCCC-ATGG-ATGACCCCCC-T
+CAGAT-AGGGGTCCCTTGACCACCATCC
+>BRO3_1
+ATTCTAATTTAAACTATTCT-CTGTTCTTTCATGGGGAAGCAGATTTGGG
+TACCACCCAAGTATTGACTCACCCATCAACAACCGCTATGTATTTCGTAC
+ATTAC-TGCCAGCCACCATGAATATTGTACGGTACCATAAA-TACTTGAC
+CACCTGTAGTACATAAAAACCC-AATCC--ACATCAAAA----CCCCCCC
+CC-CATGCTTACAAGCAAGTACAGCAACCAACCCTCAA-CTATCACACAT
+CAGCTGCAACTCCAAAGCCAC-CCCTCACCCAC-TAGGATACCAACAAAC
+CTACCCACCC-TTAACAGTACATAGTACATAAAGCCATTTACCGTACATA
+GCACATTACA-GTCAAATCCCTTCTCGTCCCC-ATGG-ATGACCCCCC-T
+CAGAT-AGGGGTCCCTTGACCACCATCC
+>BRO4
+ATTCTAATTTAAACTATTCT-CTGTTCTTTCATGGGGAAGCAGATTTGGG
+TACCACCCAAGTATTGACTCACCCATCAACAACCGCTATGTATTTCGTAC
+ATTAC-TGCCAGCCACCATGAATATTGTACGGTACCATAAA-TACTTGAC
+CACCTGTAGTACATAAAAACCC-AATCC--ACATCAAAA----CCCCCCC
+CC-CATGCTTACAAGCAAGTACAGCAACCAACCCTCAA-CTATCATACAT
+CAACTGCAACTCCAAAGCCAC-CCCTCACCCAC-TAGGATACCAACAAAC
+CTACCCACCC-TTAACAGTACATAGTACATAAAGCCATTTACCGTACATA
+GCACATTACA-GTCAAATCCCTTCTCGTCCCC-ATGG-ATGACCCCCC-T
+CAGAT-AGGGGTCCCTTGACCACCATCC
+>BRO5
+ATTCTAATTTAAACTATTCT-CTGTTCTTTCATGGGGAAGCAGATTTGGG
+TACCACCCAAGTATTGACTCACCCATCAACAACCGCTATGTATTTCGTAC
+ATTAC-TGCCAGCCACCATGAATATTGTACAGTACCATAAA-TACTTGAC
+CACCTGTAGTACATAAAAACCC-AATCC--ACACCAAAA----CCCCCCC
+CC-CATGCTTACAAGCAAGTACAGCAACCAACCCTCAA-CTATCACACAT
+CAACTGCAACTCCAAAGCCAC-CCCTCACCCAC-TAGGATACCAACAAAC
+CTACCCACCC-TTAACAGTACATAGTACATAAAGCCATTTACCGTACATA
+GCACATTACA-GTCAAATCCCTTCTCGTCCCC-ATGG-ATGACCCCCC-T
+CAGAT-AGGGGTCCCTTGACCACCATCC
+>BRO6
+ATTCTAATTTAAACTATTCT-CTGTTCTTTCATGGGGAAGCAGATTTGGG
+TACCACCCAAGTATTGACTCACCCATCAACAACCGCTATGTATTTCGTAC
+ATTAC-TGCCAGCCACCATGAATATTGTACGGTACCATAAA-TACTTGAC
+CACCTGTAATACATAAAAACCC-AATTC--ACACCAAAA----CCCCCCC
+CC-CATGCTTACAAGCAAGTACAGCAACCAACCCTCAA-CTATCACACAT
+CAACTGCAACTCCAAAGCCAC-CCCTCACCCAC-TAGGATACCAACAAAC
+CTACCCACCC-TTAACAGTACATAGTACATAAAGCCATTTACCGTACATA
+GCACATTACA-GTCAAATCCCTTCTCGTCCCC-ATGG-ATGACCCCCC-T
+CAGAT-AGGGGTCCCTTGACCACCATCC
+>BRO7_1
+ATTCTAATTTAAACTATTCT-CTGTTCTTTCATGGGGAAGCAGATTTGGG
+TACCACCCAAGTATTGACTCACCCATCAACAACCGCTATGTATTTCGTAC
+ATTAC-TGCCAGCCACCATGAATATTGTACGGTACCATAAA-TACTTGAC
+CACCTGTAGTACATAAAAACCC-AATCC--ACACCAAAA----CCCCCCC
+CC-CATGCTTACAAGCAAGTACAGCAACCAACCCTCAA-CTATCACACAT
+CAACTGCAACTCCAAAGCCAC-CCCTCACCCAC-TAGGATACCAACAAAC
+CTACCCACCC-TTAACAGTACATAGTACATAAAGCCATTTACCGTACATA
+GCACATTACA-GTCAAATCCCTTCTCGTCCCC-ATGG-ATGACCCCCC-T
+CAGAT-AGGGGTCCCTTGACCACCATCC
+>BRO8
+ATTCTAATTTAAACTATTCT-CTGTTCTTTCATGGGGAAGCAGATTTGGG
+TACCACCCAAGTATTGACTCACCCATCAACAACCGCTATGTATTTCGTAC
+ATTAC-TGCCAGCCACCATGAATATTGTACGGTACCATAAA-TACTTGAC
+CACCTGTAGTACATAAAAACCC-AATCC--ACATCAAAA----CCCCCCC
+CC-CATGCTTACAAGCAAGTACAGCAACCAACCCTCAA-CTATCACACAT
+CAACTGCAACTCCAAAGCCAC-CCCTCACCCAC-TAGAATACCAACAAAC
+CTACCCACCC-TTAACAGTACATAGTACATAAAGCCATTTACCGTACATA
+GCACATTACA-GTCAAATCCCTTCTCGTCCCC-ATGG-ATGACCCCCC-T
+CAGAT-AGGGGTCCCTTGACCACCATCC
+>BRO9
+ATTCTAATTTAAACTATTCT-CTGTTCTTTCATGGGGAAGCAGATTTGGG
+TACCACCCAAGTATTGACTCACCCATCAACAACCGCTATGTATTTCGTAC
+ATTAC-TGCCAGCCACCATGAATATTGTACGGTACCATAAA-TACTTGAC
+CACCTGTAGTACATAAAAACCC-AACCC--ACATCAAAA----CCCCCCC
+CC-CATGCTTACAAGCAAGTACAGCAACCAACCCTCAA-CTATCACACAT
+CAATTGCAACTCCAAAGCCAC-CCCTCACCCAC-TAGGATACCAACAAAC
+CTACCCACCC-TTAACAGTACATAGTACATAAAGCCATTTACCGTACATA
+GCACATTACA-GTCAAATCCCTTCTCGTCCCC-ATGG-ATGACCCCCC-T
+CAGAT-AGGGGTCCCTTGACCACCATCC
+>BRO10
+ATTCTAATTTAAACTATTCT-CTGTTCTTTCATGGGGAAGCAGATTTGGG
+TACCACCCAAGTATTGACTCACCCATCAACAACCGCTATGTATTTCGTAC
+ATTAC-TGCCAGCCACCATGAATATTGTACGGTACCATAAA-TACTTGAC
+CACCTGTAGTACATAAAAACCC-AATCC--ACATCAAAA----CCCCCCC
+CC-CATGCTTACAAGCAAGTACAGCAATCAACCTTCAA-CTATCACACAT
+CAACTGCAACTCCAAAGCCAC-CCCTCACCCAC-TAGGATACCAACAAAC
+CTACCCACCC-TTAACAGTACATAGCACATAAAGCCATTTATCGTACATA
+GCACATTACA-GTCAAATCCCTTCTCGTCCCC-ATGG-ATGACCCCCC-T
+CAGAT-AGGGGTCCCTTGACCACCATCC
+>BRO11_1
+ATTCTAATTTAAACTATTCT-CTGTTCTTTCATGGGGAAGCAGATTTGGG
+TACCACCCAAGTATTGACTCACCCATCAACAACCGCTATGTATTTCGTAC
+ATTAC-TGCCAGCCACCATGAATATTGTACGGTACCATAAA-TACTTGAC
+TACCTGTAGTACATAAAAACCC-AACCC--ACATCAAAA----CCCTGCC
+CC-CATGCTTACAAGCAAGTACAGCAATCAACCTTCAA-CTGTCACACAT
+CAACTGCAACTCCAAAGCCAC-CCCTCACCCAC-TAGGATACCAACAAAC
+CTACCCACCC-TTAACAGTACATAGCACATAAAGTCATTTACCGTACATA
+GCACATTACA-GTCAAATCCCTTCTCGTCCCC-ATGG-ATGACCCCCC-T
+CAGAT-AGGGGTCCCTTGACCACCATCC
+>BRO12
+ATTCTAATTTAAACTATTCT-CTGTTCTTTCATGGGGAAGCAGATTTGGG
+TACCACCCAAGTATTGACTCACCCATCAACAACCGCTATGTATTTCGTAC
+ATTAC-TGCCAGCCACCATGAATATTGTACAGTACCATAAA-TACTTGAC
+TACCTGTAGTACATAAAAACCC-AATCC--ACATCAAAA----CCCCCTC
+CC-CATGCTTACAAGCAAGTACAGCAATCAACCTTCAA-CTATCACACAT
+CAACTGCAACTCCAAAGCCAC-CCCTCACCCAC-TAGGATACCAACAAAC
+CTACCCACCC-TTAACAGTACATAGTACATAAAGCCATTTACCGTACATA
+GCACATTACA-GTCAAATCCCTTCTCGTCCCC-ATGG-ATGACCCCCC-T
+CAGAT-AGGGGTCCCTTGACCACCATCC
\ No newline at end of file