Mercurial > repos > iuc > icescreen

comparison test-data/NC_004668_137848_164286_icescreen.embl @ 9:cca2a89210ae draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/icescreen commit c45c31257dbfd6991c86cee56bb8961e4c5cbe47
author iuc
date Sun, 23 Feb 2025 16:52:34 +0000
parents 130a217f8d3f
children
comparison
equal deleted inserted replaced
8:130a217f8d3f 9:cca2a89210ae
1 ID NC_004668; SV 1; ; DNA; ; UNC; 0 BP.
2 XX
3 AC NC_004668;
4 XX
5 PR Project:PRJNA224116;
6 XX
7 DE Enterococcus faecalis V583, complete sequence
8 XX
9 OS .
10 OC .
11 XX
12 FH Key Location/Qualifiers
13 FH
14 FT CDS 1..1512
15 FT /origid="EF_RS00630"
16 FT /function="Coupling Protein"
17 FT /protein_id="WP_002359295.1"
18 FT /locus_tag="EF_RS00630"
19 FT /codon_start=1
20 FT /color=6
21 FT /note="ICEscreen prediction: Coupling protein; BlastP
22 FT result (Annotation confidence: HIGH): Coupling protein TcpA
23 FT [Hit with AAO80014; Identity:100.00%; E-value:0.00e+00;
24 FT Query coverage:100.00%]; Hmmscan result: TcpA [Hit with
25 FT tcpA HMM profile; E-value:7.00e-94; i-Evalue:8.80e-94]"
26 FT CDS 3098..4381
27 FT /origid="EF_RS00650"
28 FT /function="Relaxase"
29 FT /protein_id="WP_002359299.1"
30 FT /locus_tag="EF_RS00650"
31 FT /codon_start=1
32 FT /color=7
33 FT /note="ICEscreen prediction: Relaxase; BlastP result
34 FT (Annotation confidence: HIGH): Relaxase MOBT (PF02486) [Hit
35 FT with AAO80018; Identity:99.77%; E-value:0.00e+00; Query
36 FT coverage:95.53%]; Hmmscan result: MOBT [Hit with T4SS_MOBT
37 FT HMM profile; E-value:3.00e-128; i-Evalue:3.40e-128]"
38 FT CDS 17920..20427
39 FT /origid="EF_RS00720"
40 FT /function="VirB4"
41 FT /protein_id="WP_002359320.1"
42 FT /locus_tag="EF_RS00720"
43 FT /codon_start=1
44 FT /color="184 134 11"
45 FT /note="ICEscreen prediction: VirB4; BlastP result
46 FT (Annotation confidence: HIGH): VirB4 [Hit with CAE52368;
47 FT Identity:41.15%; E-value:0.00e+00; Query coverage:99.76%];
48 FT Hmmscan result: VirB4 [Hit with T4SS_virb4 HMM profile;
49 FT E-value:1.80e-28; i-Evalue:2.40e-28]"
50 FT CDS 25273..26439
51 FT /origid="EF_RS00760"
52 FT /function="Tyrosine Integrase"
53 FT /protein_id="WP_002392915.1"
54 FT /locus_tag="EF_RS00760"
55 FT /codon_start=1
56 FT /color=8
57 FT /note="ICEscreen prediction: Tyrosine integrase; BlastP
58 FT result (Annotation confidence: HIGH): Tyrosine integrase
59 FT [Hit with AAO80040; Identity:100.00%; E-value:0.00e+00;
60 FT Query coverage:100.00%]; Hmmscan result: Tyrosine integrase
61 FT [Hit with Phage_integrase HMM profile; E-value:4.40e-29;
62 FT i-Evalue:9.70e-29]"
63 FT mobile_element 1..26439
64 FT /mobile_element_type="other: integrative and conjugative
65 FT element"
66 FT /note="ICEscreen prediction: Putative ICE (one integrase
67 FT Tyr) [Element structure: Single; ICE superfamily: Tn916;
68 FT ICE family: ICESt3; Relaxase family: - (MOBT); Coupling
69 FT protein family: TcpA] (ICEscreen ID: ID_1)"
70 FT /color=15
71 XX
72 SQ Sequence 0 BP; 0 A; 0 C; 0 G; 0 T; 0 other;
73 //