diff test-data/NC_004668_137848_164286_detected_ME.summary @ 0:7c77b2896ac2 draft

"planemo upload for repository https://forgemia.inra.fr/ices_imes_analysis/icescreen commit e77a58fd03abe136aca7b79db16be4644520bb64"
author iuc
date Tue, 04 Jan 2022 10:52:42 +0000
parents
children 2bb38197ff75
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
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+##################### Mobile elements detection statistics #####################
+# Number of complete elements
+Complete ICE (4 types of SP): 1
+Complete IME (R+I, R+C+I): 0
+
+# Number of complete modules
+Conjugation module (R+C+V): 0
+Mobilizable element (R+C with size <= 10 CDS): 0
+
+# Number of partial elements
+Partial ICE (at least V): 0
+Other partial element (R+C, R+V, V+C with size > 10 CDS): 0
+
+# Composite elements
+Total nested elements (partial or complete): 0
+Host element: 0
+Guest element: 0
+Element that are both host and guest: 0
+
+################### Signature proteins detection statistics ####################
+# Total SP detected
+Total SP: 4
+Total Integrase: 1
+Total Relaxase: 1
+Total Coupling protein: 1
+Total VirB4: 1
+
+# Unassigned SP
+Unassigned SP: 0
+Unassigned Integrase: 0
+Unassigned Relaxase: 0
+Unassigned Coupling protein: 0
+Unassigned VirB4: 0
+
+############################# Segments statistics ##############################
+Number of segments: 1
+Segment with one element: 1
+Segment with several elements: 0
+Segment with nested elements: 0
+Segment with no element: 0
+
+############################### Parameters used ################################
+Maximum CDS numbers in initial segments: 100
+Maximum CDS numbers in an IME element: 10