Mercurial > repos > iuc > icescreen
diff test-data/NC_004668_137848_164286_detected_ME.summary @ 0:7c77b2896ac2 draft
"planemo upload for repository https://forgemia.inra.fr/ices_imes_analysis/icescreen commit e77a58fd03abe136aca7b79db16be4644520bb64"
author | iuc |
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date | Tue, 04 Jan 2022 10:52:42 +0000 |
parents | |
children | 2bb38197ff75 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/NC_004668_137848_164286_detected_ME.summary Tue Jan 04 10:52:42 2022 +0000 @@ -0,0 +1,44 @@ +##################### Mobile elements detection statistics ##################### +# Number of complete elements +Complete ICE (4 types of SP): 1 +Complete IME (R+I, R+C+I): 0 + +# Number of complete modules +Conjugation module (R+C+V): 0 +Mobilizable element (R+C with size <= 10 CDS): 0 + +# Number of partial elements +Partial ICE (at least V): 0 +Other partial element (R+C, R+V, V+C with size > 10 CDS): 0 + +# Composite elements +Total nested elements (partial or complete): 0 +Host element: 0 +Guest element: 0 +Element that are both host and guest: 0 + +################### Signature proteins detection statistics #################### +# Total SP detected +Total SP: 4 +Total Integrase: 1 +Total Relaxase: 1 +Total Coupling protein: 1 +Total VirB4: 1 + +# Unassigned SP +Unassigned SP: 0 +Unassigned Integrase: 0 +Unassigned Relaxase: 0 +Unassigned Coupling protein: 0 +Unassigned VirB4: 0 + +############################# Segments statistics ############################## +Number of segments: 1 +Segment with one element: 1 +Segment with several elements: 0 +Segment with nested elements: 0 +Segment with no element: 0 + +############################### Parameters used ################################ +Maximum CDS numbers in initial segments: 100 +Maximum CDS numbers in an IME element: 10