Mercurial > repos > iuc > icescreen

diff test-data/NC_004668_137848_164286_detected_ME.tsv @ 7:d45c95f382d3 draft

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planemo upload for repository https://forgemia.inra.fr/ices_imes_analysis/icescreen commit bc68b3c32a23a39507f54cb6b4453676174712d6
author iuc
date Fri, 26 Jan 2024 13:38:40 +0000
parents 2bb38197ff75
children
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--- a/test-data/NC_004668_137848_164286_detected_ME.tsv	Tue Oct 31 16:31:33 2023 +0000
+++ b/test-data/NC_004668_137848_164286_detected_ME.tsv	Fri Jan 26 13:38:40 2024 +0000
@@ -1,2 +1,2 @@
-ICE_IME_id	Segment_number	Genome_accession	Category_of_element	Category_of_integrase	Host_ICE_IME_ids	Guest_ICE_IME_ids	Colocalized_ICE_IME_ids	ICEline_format	ICE_consensus_superfamily_SP_conj_module	ICE_consensus_family_SP_conj_module	IME_relaxase_family_domains_blast	HMM_family_SP_conj_module	Integrase_upstream	Integrase_downstream	Relaxase	Coupling_protein	VirB4	List_SP_ordered_genomic_position	Other_potential_SP_conj_module_need_manual_curation_and_review	Other_potential_integrase_need_manual_curation_and_review	Comments_regarding_structure
-ID_1	1	NC_004668.1	Complete ICE (C+R+V+I)	one integrase Tyr	-	-	-	C3.R1:V7.I	Tn916	ICESt3	-	C:TcpA, R:MOBT, V:VirB4	-	EF_RS00760	EF_RS00650	EF_RS00630	EF_RS00720	EF_RS00630, EF_RS00650, EF_RS00720, EF_RS00760	-	-	Downstream integrase EF_RS00760 has been associated to the structure ID_1 pre-merging because it is adjacent to the conj module and there is no upstream/downstream ambiguity. 
+ICE_IME_id	Segment_number	Genome_accession	Category_of_element	Category_of_integrase	Host_ICE_IME_ids	Guest_ICE_IME_ids	Colocalized_ICE_IME_ids	ICEline_format	ICE_consensus_superfamily_SP_conj_module	ICE_consensus_family_SP_conj_module	IME_relaxase_family_domains_blast	HMM_family_SP_conj_module	Integrase_upstream	Integrase_downstream	Relaxase	Coupling_protein	VirB4	List_SP_ordered_genomic_position	Start_of_most_upstream_SP	Stop_of_most_downstream_SP	Other_potential_SP_conj_module_need_manual_curation_and_review	Other_potential_integrase_need_manual_curation_and_review	Comments_regarding_structure
+ID_1	1	NC_004668.1	Complete ICE (C+R+V+I)	one integrase Tyr	-	-	-	C3.R1:V7.I	Tn916	ICESt3	-	C:TcpA, R:MOBT, V:VirB4	-	EF_RS00760	EF_RS00650	EF_RS00630	EF_RS00720	EF_RS00630, EF_RS00650, EF_RS00720, EF_RS00760	1	26439	-	-	Downstream integrase EF_RS00760 has been associated to the structure ID_1 pre-merging because it is adjacent to the conj module and there is no upstream/downstream ambiguity.