ICE_IME_id	ICE_IME_id_need_manual_curation	Segment_number	Comments_ICE_IME_structure	Is_hit_blast	Is_hit_HMM	CDS_num	Genome_accession	Genome_accession_rank	CDS_locus_tag	CDS_protein_id	CDS_strand	CDS_start	CDS_end	CDS_length	Is_pseudo	CDS_Protein_type	CDS_Protein_type_blast	Description_of_blast_most_similar_ref_SP	Id_of_blast_most_similar_ref_SP	Length_of_blast_most_similar_ref_SP	Blast_ali_length	Blast_ali_start_CDS	Blast_ali_end_CDS	Blast_ali_start_Query_blast	Blast_ali_end_Query_blast	Blast_ali_identity_perc	Blast_ali_E-value	Blast_ali_bitscore	CDS_coverage_blast	Blast_ali_coverage_most_similar_ref_SP	Protein_type_of_blast_most_similar_ref_SP	Associated_element_type_of_blast_most_similar_ref_SP	ICE_superfamily_of_most_similar_ref_SP	ICE_family_of_most_similar_ref_SP	IME_superfamily_of_most_similar_ref_SP	Relaxase_family_domain_of_most_similar_ref_SP	Relaxase_family_MOB_of_most_similar_ref_SP	Coupling_type_of_most_similar_ref_SP	False_positives	SP_blast_validation	Use_annotation	Protein_type_of_matching_HMM_profile	Description_of_matching_HMM_profile	Profile_name	Length_of_matching_HMM_profile	HMM_ali_i-Evalue	HMM_ali_E-value	HMM_ali_Score	HMM_ali_Bias	HMM_ali_Global_score	HMM_ali_Global_bias	HMM_coverage	CDS_coverage_hmm
ID_1		1		1	1	1	NC_004668.1	1	EF_RS00630	WP_002359295.1	+	1	1512	503	-	Coupling protein	Coupling protein	Coupling protein TcpA	AAO80014	503	503	1	503	1	503	100.0	0	1031.0	100.0	100.0	Coupling protein	ICE	Tn916	ICESt3	-	-	-	TcpA	-	validated	yes	Coupling protein	TcpA	tcpA	464	8.8e-94	7e-94	301.2	5.6	301.5	5.6	96.98	90.06
ID_1		1		1	1	5	NC_004668.1	1	EF_RS00650	WP_002359299.1	+	3098	4381	427	-	Relaxase	Relaxase	Relaxase MOBT (PF02486)	AAO80018	447	427	1	427	21	447	99.77	0	862.0	100.0	95.53	Relaxase	ICE	Tn916	ICESt3	-	PF02486	MOBT	-	-	validated	yes	Relaxase	MOBT	T4SS_MOBT	366	3.4000000000000003e-128	3e-128	413.4	10.4	413.6	10.4	99.45	88.99
ID_1		1		1	1	19	NC_004668.1	1	EF_RS00720	WP_002359320.1	+	17920	20427	835	-	VirB4	VirB4	VirB4	CAE52368	834	836	1	833	3	834	41.15	0	655.0	99.76	99.76	VirB4	ICE	Tn916	ICESt3	-	-	-	-	-	validated	yes	VirB4	VirB4	T4SS_virb4	943	2.4e-28	1.8000000000000002e-28	84.9	6.4	85.3	6.4	69.35	88.98
ID_1		1	Downstream integrase EF_RS00760 has been associated to the structure ID_1 pre-merging because it is adjacent to the conj module and there is no upstream/downstream ambiguity. 	1	1	27	NC_004668.1	1	EF_RS00760	WP_002392915.1	+	25273	26439	388	-	Tyrosine integrase	Tyrosine integrase	Tyrosine integrase	AAO80040	388	388	1	388	1	388	100.0	0	804.0	100.0	100.0	Integrase	ICE	-	-	-	-	-	-	-	validated	yes	Tyrosine integrase	Tyrosine integrase	Phage_integrase	172	9.7e-29	4.4e-29	86.5	0.6	87.6	0.6	88.37	42.53