view test-data/NC_004668_137848_164286_detected_ME.summary @ 2:f08181349fc4 draft

"planemo upload for repository https://forgemia.inra.fr/ices_imes_analysis/icescreen commit f826da6f47b642df169ab0747d6363326e944114"
author iuc
date Sat, 02 Apr 2022 21:05:10 +0000
parents 7c77b2896ac2
children 2bb38197ff75
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##################### Mobile elements detection statistics #####################
# Number of complete elements
Complete ICE (4 types of SP): 1
Complete IME (R+I, R+C+I): 0

# Number of complete modules
Conjugation module (R+C+V): 0
Mobilizable element (R+C with size <= 10 CDS): 0

# Number of partial elements
Partial ICE (at least V): 0
Other partial element (R+C, R+V, V+C with size > 10 CDS): 0

# Composite elements
Total nested elements (partial or complete): 0
Host element: 0
Guest element: 0
Element that are both host and guest: 0

################### Signature proteins detection statistics ####################
# Total SP detected
Total SP: 4
Total Integrase: 1
Total Relaxase: 1
Total Coupling protein: 1
Total VirB4: 1

# Unassigned SP
Unassigned SP: 0
Unassigned Integrase: 0
Unassigned Relaxase: 0
Unassigned Coupling protein: 0
Unassigned VirB4: 0

############################# Segments statistics ##############################
Number of segments: 1
Segment with one element: 1
Segment with several elements: 0
Segment with nested elements: 0
Segment with no element: 0

############################### Parameters used ################################
Maximum CDS numbers in initial segments: 100
Maximum CDS numbers in an IME element: 10