Mercurial > repos > iuc > idr_download_by_ids

comparison idr_download_by_ids.xml @ 3:381f248febba draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/idr_download commit 0ae8913ec1c14caedc9836d4889650ea836a1d70"
author iuc
date Wed, 22 Apr 2020 11:43:18 -0400
parents 17b1cd0f4812
children 11036f6197d6
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2:17b1cd0f4812 3:381f248febba
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool id="idr_download_by_ids" name="IDR Download" version="0.20" profile="18.09"> 2 <tool id="idr_download_by_ids" name="IDR Download" version="0.30" profile="18.09">
3 <description>- download images from the Image Data Resource using image IDs</description> 3 <description>- download images from the Image Data Resource using image IDs</description>
4 <macros> 4 <macros>
5 <xml name="region_spec" token_pos="upper-left corner"> 5 <xml name="region_spec" token_pos="upper-left corner">
6 <param name="x_coord" type="integer" value="0" min="0" 6 <param name="x_coord" type="integer" value="0" min="0"
7 label="x-coordinate of region @POS@" /> 7 label="x-coordinate of region @POS@" />
216 216
217 **Input** 217 **Input**
218 218
219 A set of image IDs as can be obtained from the IDR webclient_ like this: 219 A set of image IDs as can be obtained from the IDR webclient_ like this:
220 220
221 1. select the images you want to download 221 1. Select the wells you want to download in the thumbnails.
222 2. click on the 'Link' button on the top right of the page and copy the provided 222
223 URL 223 2. Select at the bottom the images in those wells that you want to download (one well might contain several images).
224 3. paste the URL into the input field of this tool, for example: :: 224
225 3. Click on the 'Link' button on the top right of the page and copy the provided URL.
226
227 4. Paste the URL into the input field of this tool, for example:
225 228
226 https://idr.openmicroscopy.org/webclient/?show=image-9036708|image-9036710|image-9036711 229 https://idr.openmicroscopy.org/webclient/?show=image-9036708|image-9036710|image-9036711
227 230
228 Alternatively, you can simply provide a list of known image IDs in the text 231 Alternatively, you can simply provide a list of known image IDs in the text
229 input field (comma or '|'-separated ), or as an input file (each ID on a 232 input field (comma or '|'-separated ), or as an input file (each ID on a