Mercurial > repos > iuc > iedb_api
changeset 5:1911ec100221 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/iedb_api commit 6007a6fe7005df2f7fd1de85ce63156511534b6e
| author | iuc |
|---|---|
| date | Fri, 07 Nov 2025 18:26:22 +0000 |
| parents | 7ed6dda64a81 |
| children | |
| files | iedb_api.py iedb_api.xml |
| diffstat | 2 files changed, 9 insertions(+), 6 deletions(-) [+] |
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--- a/iedb_api.py Sat Feb 13 00:06:36 2021 +0000 +++ b/iedb_api.py Fri Nov 07 18:26:22 2025 +0000 @@ -250,7 +250,7 @@ length = ','.join(lengths) if lengths else None method = args.method proteasome = args.proteasome if args.prediction == 'processcing' else None - url = 'http://tools-cluster-interface.iedb.org/tools_api/%s/' %\ + url = 'https://tools-cluster-interface.iedb.org/tools_api/%s/' %\ args.prediction # results
--- a/iedb_api.xml Sat Feb 13 00:06:36 2021 +0000 +++ b/iedb_api.xml Fri Nov 07 18:26:22 2025 +0000 @@ -1,6 +1,9 @@ -<tool id="iedb_api" name="IEDB" version="2.15.2"> +<tool id="iedb_api" name="IEDB" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@"> <description>MHC Binding prediction</description> <macros> + <token name="@TOOL_VERSION@">2.15.3</token> + <token name="@VERSION_SUFFIX@">0</token> + <token name="@PROFILE@">24.2</token> <xml name="alleles" token_hla_regex="" token_hla_examples="" token_hlalen_examples=""> <conditional name="alleles"> <param name="allelesrc" type="select" label="Alleles"> @@ -129,7 +132,7 @@ <option value="comblib">comblib</option> <option value="tepitope">tepitope</option> </param> - <expand macro="alleles" hla_regex="(DPA1\*0[1-3](:0[1-3])?/DPB1\*0[1-6]:0[12]|DQA1\*0[1-5]:0[12]/DQB1\*0[2-6]:0[12]|(HLA-)?DRB[1-5]\*[01][1-9]:0[1-5]|H2-IA[bd])(,(asis|[1-2][0-9]|30))*" hla_examples="DPA1*01/DPB1*04:01 HLA-DRB1*01:01 H2-IAb" hlalen_examples="DPA1*01/DPB1*04:01,11,15"/> + <expand macro="alleles" hla_regex="(DPA1\*0[1-3]:0[1-3]/DPB1\*0[1-6]:0[12]|DQA1\*0[1-5]:0[12]/DQB1\*0[2-6]:0[12]|(HLA-)?DRB[1-5]\*[01][1-9]:0[1-5]|H2-IA[bd])(,(asis|[1-2][0-9]|30))*" hla_examples="DPA1*01:03/DPB1*04:01 HLA-DRB1*01:01 H2-IAb" hlalen_examples="DPA1*01:03/DPB1*04:01,11,15"/> <param name="lengths" type="select" multiple="true" optional="false" label="peptide lengths for prediction"> <help>Used for any alleles which don't include specified lengths</help> <option value="asis">asis</option> @@ -309,7 +312,7 @@ <param name="method" value="recommended"/> <conditional name="alleles"> <param name="allelesrc" value="entry"/> - <param name="allele_text" value="DPA1*01/DPB1*04:01"/> + <param name="allele_text" value="DPA1*01:03/DPB1*04:01"/> </conditional> <param name="lengths" value="asis"/> </conditional> @@ -319,7 +322,7 @@ </conditional> <output name="output"> <assert_contents> - <has_text text="LYNTVATLY" /> + <has_text text="VATLYCVHQ" /> </assert_contents> </output> </test> @@ -403,7 +406,7 @@ The IEDB is a free resource, funded by a contract from the National Institute of Allergy and Infectious Diseases. It offers easy searching of experimental data characterizing antibody and T cell epitopes studied in humans, non-human primates, and other animal species. This tool retrieves epitope binding information about input peptide sequences by using the RESTful web services provided by IEDB. -The webservices are described at: http://tools.immuneepitope.org/main/tools-api/ +The webservices are described at: https://tools.iedb.org/main/tools-api/ That page also describes how to retrieve the available HLA alleles for class of epitope binding. **INPUTS**
