Mercurial > repos > iuc > instrain_profile
comparison instrain_profile.xml @ 3:7dc2de2e43fa draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/instrain commit aa7c7a35834f36dad6e72d5f54089a578be60731
| author | iuc |
|---|---|
| date | Thu, 02 Nov 2023 14:59:54 +0000 |
| parents | c332659ecdcc |
| children |
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| 2:c332659ecdcc | 3:7dc2de2e43fa |
|---|---|
| 1 <tool id="instrain_profile" name="InStrain Profile" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@"> | 1 <tool id="instrain_profile" name="InStrain Profile" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@"> |
| 2 <description>Creates an inStrain profile (microdiversity analysis) from a mapping file </description> | 2 <description>Creates an inStrain profile (microdiversity analysis) from a mapping file </description> |
| 3 <macros> | 3 <macros> |
| 4 <import>macros.xml</import> | 4 <import>macros.xml</import> |
| 5 </macros> | 5 </macros> |
| 6 <expand macro="edam_ontology"/> | 6 <expand macro="biotools"/> |
| 7 <expand macro="requirements"/> | 7 <expand macro="requirements"/> |
| 8 <version_command>inStrain profile --version</version_command> | 8 <version_command>inStrain profile --version</version_command> |
| 9 <command detect_errors="exit_code"><![CDATA[ | 9 <command detect_errors="exit_code"><![CDATA[ |
| 10 #set ext=$mapping_input.datatype.file_ext | 10 #set ext=$mapping_input.datatype.file_ext |
| 11 ln -s '$mapping_input' 'inputbam.$ext' | 11 ln -s '$mapping_input' 'inputbam.$ext' |