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comparison test-data/test4_integrons_table.tsv @ 2:392f100eebcd draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/integron_finder commit bf94533e76d4253a734333e33c2f14f6634f0e79
author iuc
date Sun, 25 Feb 2024 16:08:08 +0000
parents 1ae00120dd24
children bfd290fe1588
comparison
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1:4768f7f8e93f 2:392f100eebcd
1 # cmd: integron_finder /tmp/tmp3_ir6t5a/files/8/8/3/dataset_883ade04-f62d-4f17-85e7-122e7b43d339.dat --cpu 1 --keep-tmp --topology-file /tmp/tmp3_ir6t5a/files/d/7/c/dataset_d7c8e07c-4b44-480f-9059-a9bff8bf5be6.dat -dt 4000 --calin-threshold 2 --max-attc-size 200 --min-attc-size 40 1 # cmd: integron_finder /tmp/tmpx8hgxvv4/files/0/6/1/dataset_061a0fee-1c9e-49b2-949c-3c47f53e6db1.dat --cpu 1 --keep-tmp --topology-file /tmp/tmpx8hgxvv4/files/4/e/0/dataset_4e02f977-0c6a-4062-89ef-148bf2871520.dat -dt 4000 --calin-threshold 2 --max-attc-size 200 --min-attc-size 40
2 ID_integron ID_replicon element pos_beg pos_end strand evalue type_elt annotation model type default distance_2attC considered_topology 2 ID_integron ID_replicon element pos_beg pos_end strand evalue type_elt annotation model type default distance_2attC considered_topology
3 integron_01 ACBA.007.P01_13 ACBA.007.P01_13_1 55 1014 1 1.9000000000000001e-25 protein intI intersection_tyr_intI In0 Yes NA lin 3 integron_01 ACBA.007.P01_13 ACBA.007.P01_13_1 55 1014 1 1.9e-25 protein intI intersection_tyr_intI In0 Yes NA lin
4 integron_02 ACBA.007.P01_13 ACBA.007.P01_13_20 17375 17722 -1 NA protein protein NA CALIN Yes NA lin 4 integron_02 ACBA.007.P01_13 ACBA.007.P01_13_20 17375 17722 -1 NA protein protein NA CALIN Yes NA lin
5 integron_02 ACBA.007.P01_13 attc_001 17825 17884 -1 1e-09 attC attC attc_4 CALIN Yes NA lin 5 integron_02 ACBA.007.P01_13 attc_001 17825 17884 -1 1e-09 attC attC attc_4 CALIN Yes NA lin
6 integron_02 ACBA.007.P01_13 ACBA.007.P01_13_21 17886 18665 -1 NA protein protein NA CALIN Yes NA lin 6 integron_02 ACBA.007.P01_13 ACBA.007.P01_13_21 17886 18665 -1 NA protein protein NA CALIN Yes NA lin
7 integron_02 ACBA.007.P01_13 attc_002 19080 19149 -1 0.0001 attC attC attc_4 CALIN Yes 1196.0 lin 7 integron_02 ACBA.007.P01_13 attc_002 19080 19149 -1 0.0001 attC attC attc_4 CALIN Yes 1196.0 lin
8 integron_02 ACBA.007.P01_13 ACBA.007.P01_13_22 19090 19749 -1 NA protein protein NA CALIN Yes NA lin 8 integron_02 ACBA.007.P01_13 ACBA.007.P01_13_22 19090 19749 -1 NA protein protein NA CALIN Yes NA lin