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comparison test-data/integron_log @ 3:bfd290fe1588 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/integron_finder commit cbb56e087d23446b8159622e2e4b7a709c8529ad
author iuc
date Fri, 14 Jun 2024 21:19:29 +0000
parents 392f100eebcd
children
comparison
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2:392f100eebcd 3:bfd290fe1588
7 |___|_| |_|\__\___|\__, |_| \___/|_| |_| |_| |_|_| |_|\__,_|\___|_| 7 |___|_| |_|\__\___|\__, |_| \___/|_| |_| |_| |_|_| |_|\__,_|\___|_|
8 |___/ 8 |___/
9 9
10 ************************************************************************** 10 **************************************************************************
11 11
12 integron_finder version 2.0.3 12 integron_finder version 2.0.5
13 Using: 13 Using:
14 - Python 3.12.1 | packaged by conda-forge | (main, Dec 23 2023, 08:03:24) [GCC 12.3.0] 14 - Python 3.12.3 | packaged by conda-forge | (main, Apr 15 2024, 18:38:13) [GCC 12.3.0]
15 - numpy 1.26.4 15 - numpy 1.26.4
16 - pandas 2.2.0 16 - pandas 2.2.2
17 - matplolib 3.8.2 17 - matplolib 3.8.4
18 - biopython 1.83 18 - biopython 1.83
19 19
20 - Prodigal V2.6.3: February, 2016 20 - Prodigal V2.6.3: February, 2016
21 - INFERNAL 1.1.4 (Dec 2020) 21 - INFERNAL 1.1.4 (Dec 2020)
22 - HMMER 3.3.2 (Nov 2020); http://hmmer.org/ 22 - HMMER 3.3.2 (Nov 2020); http://hmmer.org/
32 32
33 If you use --func-annot in conjunction with file NCBIfam-AMRFinder.hmm please also cite 33 If you use --func-annot in conjunction with file NCBIfam-AMRFinder.hmm please also cite
34 34
35 Haft, DH et al., Nucleic Acids Res. 2018 Jan 4;46(D1):D851-D860 35 Haft, DH et al., Nucleic Acids Res. 2018 Jan 4;46(D1):D851-D860
36 PMID: 29112715 36 PMID: 29112715
37 37
38 38
39 ======================= 39 =======================
40 40
41 integron_finder is free software: you can redistribute it and/or modify 41 integron_finder is free software: you can redistribute it and/or modify
42 it under the terms of the GNU General Public License as published by 42 it under the terms of the GNU General Public License as published by
52 along with this program (COPYING file). 52 along with this program (COPYING file).
53 If not, see <http://www.gnu.org/licenses/>. 53 If not, see <http://www.gnu.org/licenses/>.
54 54
55 ======================= 55 =======================
56 56
57 command used: integron_finder /tmp/tmpx8hgxvv4/files/4/8/1/dataset_481be4e5-1005-4f8f-8196-c85c63664801.dat --cpu 1 --keep-tmp -dt 4000 --calin-threshold 2 --max-attc-size 200 --min-attc-size 40 57 command used: integron_finder /tmp/tmphy8ici_1/files/3/c/0/dataset_3c0e648b-467e-4d54-a0da-908f237d87ff.dat --cpu 1 --keep-tmp -dt 4000 --calin-threshold 2 --max-attc-size 200 --min-attc-size 40
58 58
59 ======================= 59 =======================
60 60
61  61 
62 INFO : ############ Processing replicon ACBA.007.P01_13 (1/1) ############ 62 INFO : ############ Processing replicon ACBA.007.P01_13 (1/1) ############