Mercurial > repos > iuc > integron_finder

comparison test-data/test8_integrons_table.tsv @ 3:bfd290fe1588 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/integron_finder commit cbb56e087d23446b8159622e2e4b7a709c8529ad
author iuc
date Fri, 14 Jun 2024 21:19:29 +0000
parents 392f100eebcd
children
comparison
equal deleted inserted replaced
2:392f100eebcd 3:bfd290fe1588
1 # cmd: integron_finder /tmp/tmpx8hgxvv4/files/5/9/0/dataset_590dbd5b-cca8-402e-84b0-5e38a7557de0.dat --cpu 1 --keep-tmp -dt 4000 --calin-threshold 2 --max-attc-size 200 --min-attc-size 40 --attc-model /tmp/tmpx8hgxvv4/files/c/0/1/dataset_c0189f7e-8116-49cb-a925-803cedaa57d7.dat 1 # integron_finder 2.0.5
2 # cmd: integron_finder /tmp/tmphy8ici_1/files/e/5/2/dataset_e52d2948-5751-485a-b1ed-0842a2a60fed.dat --cpu 1 --keep-tmp -dt 4000 --calin-threshold 2 --max-attc-size 200 --min-attc-size 40 --attc-model /tmp/tmphy8ici_1/files/d/0/b/dataset_d0b5f9f9-1d2b-4bd8-934f-2ddb10bd9e6b.dat
2 ID_integron ID_replicon element pos_beg pos_end strand evalue type_elt annotation model type default distance_2attC considered_topology 3 ID_integron ID_replicon element pos_beg pos_end strand evalue type_elt annotation model type default distance_2attC considered_topology
3 integron_01 ACBA.007.P01_13 ACBA.007.P01_13_1 55 1014 1 1.9e-25 protein intI intersection_tyr_intI complete Yes NA circ 4 integron_01 ACBA.007.P01_13 ACBA.007.P01_13_1 55 1014 1 1.9e-25 protein intI intersection_tyr_intI complete Yes NA circ
4 integron_01 ACBA.007.P01_13 ACBA.007.P01_13_20 17375 17722 -1 NA protein protein NA complete Yes NA circ 5 integron_01 ACBA.007.P01_13 ACBA.007.P01_13_20 17375 17722 -1 NA protein protein NA complete Yes NA circ
5 integron_01 ACBA.007.P01_13 attc_001 17825 17884 -1 1e-09 attC attC dataset_c0189f7e-8116-49cb-a925-803cedaa57d7 complete Yes NA circ 6 integron_01 ACBA.007.P01_13 attc_001 17825 17884 -1 1e-09 attC attC dataset_d0b5f9f9-1d2b-4bd8-934f-2ddb10bd9e6b complete Yes NA circ
6 integron_01 ACBA.007.P01_13 ACBA.007.P01_13_21 17886 18665 -1 NA protein protein NA complete Yes NA circ 7 integron_01 ACBA.007.P01_13 ACBA.007.P01_13_21 17886 18665 -1 NA protein protein NA complete Yes NA circ
7 integron_01 ACBA.007.P01_13 attc_002 19080 19149 -1 0.0001 attC attC dataset_c0189f7e-8116-49cb-a925-803cedaa57d7 complete Yes 1196.0 circ 8 integron_01 ACBA.007.P01_13 attc_002 19080 19149 -1 0.0001 attC attC dataset_d0b5f9f9-1d2b-4bd8-934f-2ddb10bd9e6b complete Yes 1196.0 circ
8 integron_01 ACBA.007.P01_13 ACBA.007.P01_13_22 19090 19749 -1 NA protein protein NA complete Yes NA circ 9 integron_01 ACBA.007.P01_13 ACBA.007.P01_13_22 19090 19749 -1 NA protein protein NA complete Yes NA circ
9 integron_01 ACBA.007.P01_13 attc_003 19618 19726 -1 1.1e-07 attC attC dataset_c0189f7e-8116-49cb-a925-803cedaa57d7 complete Yes 469.0 circ 10 integron_01 ACBA.007.P01_13 attc_003 19618 19726 -1 1.1e-07 attC attC dataset_d0b5f9f9-1d2b-4bd8-934f-2ddb10bd9e6b complete Yes 469.0 circ
10 integron_01 ACBA.007.P01_13 ACBA.007.P01_13_23 19721 20254 -1 NA protein protein NA complete Yes NA circ 11 integron_01 ACBA.007.P01_13 ACBA.007.P01_13_23 19721 20254 -1 NA protein protein NA complete Yes NA circ