diff test-data/covar.txt @ 0:1ae00120dd24 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bakta/integron_finder commit 6e0d10965c02c249844f1eddd1c7442990695a6a
author iuc
date Thu, 22 Sep 2022 13:51:14 +0000
parents
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
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+INFERNAL1/a [1.1 | October 2013]
+NAME     attC_4
+STATES   145
+NODES    35
+CLEN     47
+W        895
+ALPH     RNA
+RF       yes
+CONS     yes
+MAP      yes
+DATE     Mon Jan 19 20:03:31 2015
+COM      [1] cmbuild --hand attc_4.cm attc_train_set_4.sto
+COM      [2] cmcalibrate attc_4.cm
+PBEGIN   0.05
+PEND     0.05
+WBETA    1e-07
+QDBBETA1 1e-07
+QDBBETA2 1e-15
+N2OMEGA  1.52588e-05
+N3OMEGA  1.52588e-05
+ELSELF   -0.08926734
+NSEQ     96
+EFFN     96.000000
+CKSUM    3931512547
+NULL     0.000  0.000  0.000  0.000
+EFP7GF   -9.9186 0.72993
+ECMLC    0.63005    -4.33175     4.20996     1600000      260875  0.004600
+ECMGC    0.41832   -12.02668     0.81138     1600000       85985  0.004652
+ECMLI    0.58141    -4.10957     4.92170     1600000      228880  0.005243
+ECMGI    0.42824   -10.63745     1.38026     1600000       68728  0.005820
+CM
+                                             [ ROOT    0 ]      -      - - - - -
+     S     0    -1 0     1     6     1     2   895  1874 -12.592 -12.531  -0.002 -11.308 -11.588 -11.983
+    IL     1     1 2     1     6     1     6   897  1875  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000
+    IR     2     2 3     2     5     1     7   897  1875  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000
+                                             [ MATP    1 ]      1    141 G C [ ]
+    MP     3     2 3     7     6     2    17   896  1874 -12.592 -12.531  -0.002 -11.308 -11.588 -11.983 -3.249 -1.316 -1.827  1.518 -2.413 -6.970 -1.008 -1.669 -6.771  3.266 -7.041 -1.135 -0.432 -6.231 -1.090 -5.342
+    ML     4     2 3     7     6     1     4   893  1872  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094
+    MR     5     2 3     7     6     1     4   893  1871  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094
+     D     6     2 3     7     6     0     0   887  1865  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319
+    IL     7     7 5     7     6     1     6   895  1873  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000
+    IR     8     8 6     8     5     1     6   895  1873  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000
+                                             [ MATP    2 ]      2    140 c g R m
+    MP     9     8 6    13     6     2    16   894  1872 -12.592 -12.531  -0.002 -11.308 -11.588 -11.983 -4.164 -4.362 -2.109 -0.857 -0.435 -2.882  2.773 -0.766 -4.417  1.213 -4.988 -2.366  1.504 -1.682 -0.391 -1.681
+    ML    10     8 6    13     6     1     4   891  1870  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094
+    MR    11     8 6    13     6     1     4   891  1869  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094
+     D    12     8 6    13     6     0     0   885  1864  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319
+    IL    13    13 5    13     6     1     6   893  1871  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000
+    IR    14    14 6    14     5     1     6   893  1871  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000
+                                             [ MATP    3 ]      3    139 C G s i
+    MP    15    14 6    19     6     2    14   892  1870 -12.592 -12.531  -0.002 -11.308 -11.588 -11.983 -1.807 -6.286 -6.486  1.123 -2.471 -7.327  3.283 -0.390 -6.409 -2.191 -2.297 -4.092  0.801 -6.656 -1.251 -2.606
+    ML    16    14 6    19     6     1     4   889  1868  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094
+    MR    17    14 6    19     6     1     3   889  1867  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094
+     D    18    14 6    19     6     0     0   884  1862  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319
+    IL    19    19 5    19     6     1     5   891  1869  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000
+    IR    20    20 6    20     5     1     5   891  1869  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000
+                                             [ MATP    4 ]      4    138 U A e r
+    MP    21    20 6    25     6     2    12   890  1868 -12.592 -12.531  -0.002 -11.308 -11.588 -11.983 -1.567 -8.813 -8.434 -4.815 -1.986 -2.946  0.157 -7.792 -2.231 -2.356 -8.712 -6.694  3.739 -8.821 -4.591 -1.729
+    ML    22    20 6    25     6     1     3   888  1866  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094
+    MR    23    20 6    25     6     1     3   887  1866  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094
+     D    24    20 6    25     6     0     0   883  1861  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319
+    IL    25    25 5    25     6     1     5   889  1867  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000
+    IR    26    26 6    26     5     1     5   889  1867  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000
+                                             [ MATP    5 ]      5    137 A U c p
+    MP    27    26 6    31     6     2    10   888  1867 -12.592 -12.531  -0.002 -11.308 -11.588 -11.983 -10.570 -9.997 -5.983  3.992 -11.330 -11.473 -9.053 -5.806 -10.659 -6.593 -10.896 -5.995 -9.154 -11.296 -10.137 -5.962
+    ML    28    26 6    31     6     1     3   886  1864  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094
+    MR    29    26 6    31     6     1     3   885  1864  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094
+     D    30    26 6    31     6     0     0   882  1860  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319
+    IL    31    31 5    31     6     1     4   887  1865  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000
+    IR    32    32 6    32     5     1     4   887  1865  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000
+                                             [ MATP    6 ]      6    136 A U = R
+    MP    33    32 6    37     6     2     8   886  1865 -12.592 -12.531  -0.012  -7.143 -11.588 -11.983 -10.505 -9.876 -6.003  3.989 -11.293 -11.472 -8.827 -4.132 -10.570 -6.478 -10.833 -5.957 -8.965 -11.262 -10.014 -5.977
+    ML    34    32 6    37     6     1     2   884  1863  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094
+    MR    35    32 6    37     6     1     2   884  1862  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094
+     D    36    32 6    37     6     0     0   881  1859  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319
+    IL    37    37 5    37     6     1     3   885  1864  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000
+    IR    38    38 6    38     5     1     3   885  1863  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000
+                                             [ MATP    7 ]      7    135 C G ] [
+    MP    39    38 6    43     4     2     6   884  1863 -11.730 -11.937  -0.002 -10.352                 -9.944 -10.195 -1.983 -6.488 -7.012 -8.577  3.966 -8.587 -9.417 -6.461 -8.627 -8.589 -4.408 -9.819 -5.380 -8.218
+    ML    40    38 6    43     4     1     2   883  1861  -4.558  -4.740  -0.269  -3.470                 -0.517  1.009 -1.262 -0.198
+    MR    41    38 6    43     4     1     1   882  1860  -4.809  -3.838  -1.706  -0.766                  0.368 -0.385 -0.191  0.094
+     D    42    38 6    43     4     0     0   880  1859  -4.568  -4.250  -2.265  -0.520
+    IL    43    43 5    43     4     1     3   884  1862  -1.686  -2.369  -1.117  -4.855                  0.000  0.000  0.000  0.000
+    IR    44    44 6    44     3     1     2   884  1862  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000
+                                             [ MATL    8 ]      8      - A - = -
+    ML    45    44 6    47     3     1     4   882  1861 -12.654  -0.001 -11.308                          1.460 -0.087 -3.247 -2.301
+     D    46    44 6    47     3     0     0   880  1858  -6.174  -1.687  -0.566
+    IL    47    47 3    47     3     1     2   883  1861  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000
+                                             [ MATL    9 ]      9      - A - = -
+    ML    48    47 3    50     3     1     3   881  1860 -12.654  -0.001 -11.308                          1.392 -0.247 -1.648 -2.219
+     D    49    47 3    50     3     0     0   879  1857  -6.174  -1.687  -0.566
+    IL    50    50 3    50     3     1     1   882  1860  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000
+                                             [ MATL   10 ]     10      - g - = -
+    ML    51    50 3    53     3     1     2   880  1859 -12.654  -0.020  -6.196                         -0.298 -0.774  0.434  0.323
+     D    52    50 3    53     3     0     0   878  1856  -6.174  -1.687  -0.566
+    IL    53    53 3    53     3     1     1   881  1859  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000
+                                             [ MATL   11 ]     11      - U - = -
+    ML    54    53 3    56     3     1     2   879  1858 -12.635  -0.032  -5.518                         -1.914 -0.835  0.163  1.039
+     D    55    53 3    56     3     0     0   877  1856  -8.231  -3.744  -0.117
+    IL    56    56 3    56     3     1     1   880  1858  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000
+                                             [ MATL   12 ]     12      - C - = -
+    ML    57    56 3    59     3     1     1   878  1857 -12.603  -4.129  -0.085                         -3.211  1.629 -0.844 -2.053
+     D    58    56 3    59     3     0     0   877  1855  -9.376  -4.889  -0.052
+    IL    59    59 3    59     3     1     1   883  1861  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000
+                                             [ MATL   13 ]     13      - A - = -
+    ML    60    59 3    62     3     1     3   881  1860  -8.488  -0.014  -7.142                          1.871 -3.422 -2.956 -3.072
+     D    61    59 3    62     3     0     0   877  1855 -13.996  -9.509  -0.002
+    IL    62    62 3    62     3     1     1   882  1860  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000
+                                             [ MATL   14 ]     14      - U - = -
+    ML    63    62 3    65     3     1     2   880  1859  -8.488  -0.014  -7.142                         -2.483 -2.313 -3.251  1.813
+     D    64    62 3    65     3     0     0   877  1855 -13.996  -9.509  -0.002
+    IL    65    65 3    65     3     1     1   881  1859  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000
+                                             [ MATL   15 ]     15      - U - = -
+    ML    66    65 3    68     3     1     1   879  1858  -8.850  -1.462  -0.656                         -2.483 -2.313 -3.251  1.813
+     D    67    65 3    68     3     0     0   877  1855 -12.730  -4.483  -0.066
+    IL    68    68 3    68     3     1     1   882  1861  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000
+                                             [ MATR   16 ]      -    134 - C - =
+    MR    69    68 3    71     3     1     3   881  1859  -8.891  -0.013  -7.209                         -3.099  1.851 -3.897 -2.265
+     D    70    68 3    71     3     0     0   877  1855 -13.963  -9.141  -0.003
+    IR    71    71 3    71     3     1     1   881  1860  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000
+                                             [ MATR   17 ]      -    133 - U - =
+    MR    72    71 3    74     3     1     3   880  1858  -8.891  -0.013  -7.209                         -2.564 -2.382 -3.335  1.824
+     D    73    71 3    74     3     0     0   877  1855 -13.963  -9.141  -0.003
+    IR    74    74 3    74     3     1     1   880  1859  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000
+                                             [ MATR   18 ]      -    132 - U - =
+    MR    75    74 3    77     3     1     3   879  1857  -8.891  -0.013  -7.209                         -2.564 -2.382 -3.335  1.824
+     D    76    74 3    77     3     0     0   877  1855 -13.963  -5.689  -0.028
+    IR    77    77 3    77     3     1     1   879  1858  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000
+                                             [ MATR   19 ]      -    131 - A - =
+    MR    78    77 3    80     3     1     2   878  1857  -9.245  -0.010  -7.562                          1.210 -0.707 -0.713 -1.109
+     D    79    77 3    80     3     0     0   877  1855 -13.937  -0.765  -1.281
+    IR    80    80 3    80     3     1     1   878  1857  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000
+                                             [ MATR   20 ]      -    130 - C - =
+    MR    81    80 3    83     3     1     2   877  1856 -12.264  -0.001 -10.582                         -2.570  1.571 -1.278 -1.160
+     D    82    80 3    83     3     0     0   876  1854 -12.663  -0.136  -3.476
+    IR    83    83 3    83     3     1     1   877  1856  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000
+                                             [ MATR   21 ]      -    129 - c - =
+    MR    84    83 3    86     3     1     1   876  1855 -12.905  -0.001 -11.223                         -0.302  0.852  0.055 -1.536
+     D    85    83 3    86     3     0     0   875  1853  -9.257  -0.137  -3.487
+    IR    86    86 3    86     3     1     1   876  1855  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000
+                                             [ MATR   22 ]      -    128 - G - =
+    MR    87    86 3    89     3     1     1   875  1854 -12.951  -0.001 -11.268                          0.549 -1.760  1.082 -2.997
+     D    88    86 3    89     3     0     0   872  1851  -6.390  -1.568  -0.620
+    IR    89    89 3    89     3     1     1   875  1854  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000
+                                             [ MATR   23 ]      -    127 - g - =
+    MR    90    89 3    92     3     1     1   874  1853 -12.951  -0.001 -11.268                          0.377 -0.568  0.671 -1.199
+     D    91    89 3    92     3     0     0   871  1850  -6.390  -1.568  -0.620
+    IR    92    92 3    92     3     1     1   874  1853  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000
+                                             [ MATR   24 ]      -    126 - C - =
+    MR    93    92 3    95     3     1     1   873  1852 -12.951  -0.001 -11.268                         -0.886  1.126 -0.297 -1.112
+     D    94    92 3    95     3     0     0   870  1849  -6.390  -1.568  -0.620
+    IR    95    95 3    95     3     1     1   873  1852  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000
+                                             [ MATR   25 ]      -    125 - U - =
+    MR    96    95 3    98     5     1     1   872  1851 -11.595  -0.002 -11.410 -11.622 -12.514         -1.444 -0.765 -1.243  1.390
+     D    97    95 3    98     5     0     0   869  1848  -5.352  -0.707  -2.978  -4.409  -2.404
+    IR    98    98 3    98     5     1     1   872  1850  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000
+                                             [ MATP   26 ]     16    124 G C [ ]
+    MP    99    98 3   103     6     2     2   871  1850 -12.592 -12.531  -0.002 -11.308 -11.588 -11.983 -6.582 -1.557 -6.411  1.191 -7.476 -1.489  1.101 -7.084 -6.836  3.115 -2.324 -2.899  0.456 -1.331 -4.597 -5.381
+    ML   100    98 3   103     6     1     1   869  1847  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094
+    MR   101    98 3   103     6     1     1   867  1846  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094
+     D   102    98 3   103     6     0     0   863  1841  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319
+    IL   103   103 5   103     6     1     1   870  1848  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000
+    IR   104   104 6   104     5     1     1   870  1848  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000
+                                             [ MATP   27 ]     17    123 u a = m
+    MP   105   104 6   109     6     2     2   869  1848 -12.592 -12.531  -0.002 -11.308 -11.588 -11.983 -0.828 -4.312 -4.303  1.181 -4.254 -3.025  2.046 -3.077 -4.365  0.739 -4.937 -2.958  2.474 -1.830 -1.666 -0.703
+    ML   106   104 6   109     6     1     1   867  1845  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094
+    MR   107   104 6   109     6     1     1   865  1843  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094
+     D   108   104 6   109     6     0     0   861  1840  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319
+    IL   109   109 5   109     6     1     1   868  1846  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000
+    IR   110   110 6   110     5     1     1   868  1846  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000
+                                             [ MATP   28 ]     18    122 U A L i
+    MP   111   110 6   115     4     2     2   867  1846 -11.741 -11.948  -0.002 -10.362                 -0.702 -9.034 -2.124 -0.041  0.340 -9.011 -1.841 -8.027 -8.700 -2.090 -8.930 -6.877  3.625 -9.170 -4.866 -7.506
+    ML   112   110 6   115     4     1     1   865  1844  -3.758  -3.940  -0.507  -2.670                  0.368 -0.385 -0.191  0.094
+    MR   113   110 6   115     4     1     1   862  1841  -4.809  -3.838  -1.706  -0.766                  0.368 -0.385 -0.191  0.094
+     D   114   110 6   115     4     0     0   860  1839  -4.568  -4.250  -2.265  -0.520
+    IL   115   115 5   115     4     1     1   867  1845  -1.686  -2.369  -1.117  -4.855                  0.000  0.000  0.000  0.000
+    IR   116   116 6   116     3     1     1   866  1845  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000
+                                             [ MATL   29 ]     19      - C - s -
+    ML   117   116 6   119     5     1     1   865  1844 -11.595  -0.002 -11.410 -11.622 -12.514         -2.365  1.152  0.068 -0.902
+     D   118   116 6   119     5     0     0   858  1836  -4.959  -0.803  -4.221  -2.596  -2.508
+    IL   119   119 3   119     5     1     1   864  1842  -2.408  -0.496  -4.087  -5.920  -5.193          0.000  0.000  0.000  0.000
+                                             [ MATP   30 ]     20    121 A U e r
+    MP   120   119 3   124     6     2     2   864  1843 -12.592 -12.531  -0.002 -11.308 -11.588 -11.983 -1.884 -7.244 -7.809  3.089 -6.922 -8.680  2.277 -2.136 -7.694  0.753 -8.160 -4.763 -1.577 -8.142 -4.435 -6.477
+    ML   121   119 3   124     6     1     1   856  1834  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094
+    MR   122   119 3   124     6     1     1   853  1831  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094
+     D   123   119 3   124     6     0     0   837  1815  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319
+    IL   124   124 5   124     6     1     1   861  1840  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000
+    IR   125   125 6   125     5     1     1   861  1840  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000
+                                             [ MATP   31 ]     21    120 A U c p
+    MP   126   125 6   130     6     2     2   862  1841 -12.592 -12.531  -0.002 -11.308 -11.588 -11.983 -8.851 -7.764 -2.118  3.793 -8.437 -10.138 -0.570 -2.650 -8.525 -0.651 -9.020 -5.124 -1.428 -9.742 -6.081 -7.490
+    ML   127   125 6   130     6     1     1   850  1829  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094
+    MR   128   125 6   130     6     1     1   847  1826  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094
+     D   129   125 6   130     6     0     0   831  1809  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319
+    IL   130   130 5   130     6     1     1   859  1837  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000
+    IR   131   131 6   131     5     1     1   859  1837  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000
+                                             [ MATP   32 ]     22    119 G C = L
+    MP   132   131 6   136     6     2     2   860  1839 -12.592 -12.531  -0.002 -11.308 -11.588 -11.983 -6.681 -0.356 -6.503  0.360 -7.617 -1.551  1.417 -1.964 -6.924  3.364 -7.172 -2.953 -2.958 -6.355 -4.698 -5.467
+    ML   133   131 6   136     6     1     1   841  1819  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094
+    MR   134   131 6   136     6     1     1   838  1816  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094
+     D   135   131 6   136     6     0     0   825  1803  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319
+    IL   136   136 5   136     6     1     1   856  1834  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000
+    IR   137   137 6   137     5     1     1   856  1834  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000
+                                             [ MATP   33 ]     23    118 c g ] [
+    MP   138   137 6   142     3     2     2   858  1837  -0.007       *  -7.643                         -0.812 -0.317 -2.510 -0.729 -4.140 -1.090  2.981 -4.503 -4.225  0.880 -1.072 -2.070  0.595 -1.518 -0.284 -3.425
+    ML   139   137 6   142     3     1     1   821  1799  -1.000       *  -1.000                          0.368 -0.385 -0.191  0.094
+    MR   140   137 6   142     3     1     1   821  1799  -1.000       *  -1.000                          0.368 -0.385 -0.191  0.094
+     D   141   137 6   142     3     0     0   820  1798  -1.000       *  -1.000
+    IL   142   142 5   142     3     1     1   857  1835  -0.027       *  -5.744                          0.000  0.000  0.000  0.000
+    IR   143   143 6   143     2     1     1    13    28  -1.823  -0.479                                  0.000  0.000  0.000  0.000
+                                             [ END    34 ]      -      - - - - -
+     E   144   143 6    -1     0     0     0     0     0
+//
+HMMER3/f [i1.1 | October 2013]
+NAME  attC_4
+LENG  47
+MAXL  899
+ALPH  RNA
+RF    yes
+MM    no
+CONS  yes
+CS    yes
+MAP   yes
+DATE  Mon Jan 19 20:03:31 2015
+COM   [1] cmbuild --hand attc_4.cm attc_train_set_4.sto
+NSEQ  96
+EFFN  81.594727
+CKSUM 3931512547
+STATS LOCAL MSV       -8.0165  0.72993
+STATS LOCAL VITERBI   -8.5470  0.72993
+STATS LOCAL FORWARD   -2.8542  0.72993
+HMM          A        C        G        U
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.36592  1.36257  1.42708  1.39094
+          1.38629  1.38629  1.38629  1.38629
+          0.00204  6.88959  6.88959  1.46634  0.26236  0.00000        *
+      1   1.47847  2.74840  0.46402  2.53536      1 G [ - <
+          1.38629  1.38629  1.38629  1.38629
+          0.00204  6.88959  6.88959  1.46634  0.26236  1.09861  0.40547
+      2   2.80092  0.67279  1.80861  1.32771      2 C R - <
+          1.38629  1.38629  1.38629  1.38629
+          0.00204  6.88959  6.88959  1.46634  0.26236  1.09861  0.40547
+      3   1.85804  0.41549  3.36842  1.90005      3 C s - <
+          1.38629  1.38629  1.38629  1.38629
+          0.00204  6.88959  6.88959  1.46634  0.26236  1.09861  0.40547
+      4   3.69371  2.33806  3.58381  0.16154      4 U e - <
+          1.38629  1.38629  1.38629  1.38629
+          0.00204  6.88959  6.88959  1.46634  0.26236  1.09861  0.40547
+      5   0.00512  6.50309  6.16068  6.50100      5 A c - <
+          1.38629  1.38629  1.38629  1.38629
+          0.00204  6.88959  6.88959  1.46634  0.26236  1.09861  0.40547
+      6   0.00672  5.72139  6.25551  6.50195      6 A = - <
+          1.38629  1.38629  1.38629  1.38629
+          0.00204  6.88959  6.88959  1.46634  0.26236  1.09861  0.40547
+      7   4.27255  0.02200  6.25809  5.13253      7 C ] - <
+          1.38629  1.38629  1.38629  1.38629
+          0.00204  6.88959  6.88959  1.46634  0.26236  1.09861  0.40547
+      8   0.37524  1.45216  3.61000  2.96117      8 A = - -
+          1.38629  1.38629  1.38629  1.38629
+          0.00204  6.88959  6.88959  1.46634  0.26236  1.09861  0.40547
+      9   0.42348  1.56183  2.52300  2.89563      9 A = - -
+          1.38629  1.38629  1.38629  1.38629
+          0.00204  6.88959  6.88959  1.46634  0.26236  1.09861  0.40547
+     10   1.58522  1.91861  1.09174  1.16265     10 g = - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01535  6.88959  4.25350  1.46634  0.26236  1.09861  0.40547
+     11   2.67081  1.96038  1.27856  0.67029     11 U = - -
+          1.38629  1.38629  1.38629  1.38629
+          0.02368  6.87631  3.79983  1.46634  0.26236  2.77000  0.06471
+     12   3.57863  0.25850  1.98007  2.78364     12 C = - -
+          1.38629  1.38629  1.38629  1.38629
+          2.83122  6.85473  0.06187  1.46634  0.26236  3.60115  0.02767
+     13   0.11057  3.55402  3.24839  3.29069     13 A = - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03515  4.05867  4.05867  1.46634  0.26236  6.83206  0.00108
+     14   2.90925  2.82331  3.43701  0.15793     14 U = - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03515  4.05867  4.05867  1.46634  0.26236  6.83206  0.00108
+     15   2.90925  2.82331  3.43701  0.15793     15 U = - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03515  4.05867  4.05867  1.46634  0.26236  0.00216  6.13892
+     16   1.79396  1.85607  0.57562  2.16230     16 G [ - <
+          1.38629  1.38629  1.38629  1.38629
+          0.00204  6.88959  6.88959  1.46634  0.26236  1.09861  0.40547
+     17   1.68938  1.29005  2.11445  0.86890     17 u = - <
+          1.38629  1.38629  1.38629  1.38629
+          0.00204  6.88959  6.88959  1.46634  0.26236  1.09861  0.40547
+     18   2.17270  2.31497  4.10529  0.26023     18 U L - <
+          1.38629  1.38629  1.38629  1.38629
+          0.00204  6.88959  6.88959  1.46634  0.26236  1.09861  0.40547
+     19   2.98995  0.59134  1.34531  1.99756     19 C s - -
+          1.38629  1.38629  1.38629  1.38629
+          0.00204  6.88959  6.88959  1.46634  0.26236  1.09861  0.40547
+     20   0.60908  1.14694  2.20721  3.55669     20 A e - <
+          1.38629  1.38629  1.38629  1.38629
+          0.00204  6.88959  6.88959  1.46634  0.26236  1.09861  0.40547
+     21   0.12915  2.93836  3.14908  3.67645     21 A c - <
+          1.38629  1.38629  1.38629  1.38629
+          0.00204  6.88959  6.88959  1.46634  0.26236  1.09861  0.40547
+     22   2.02391  1.59657  0.43035  4.20022     22 G = - <
+          1.38629  1.38629  1.38629  1.38629
+          0.00204  6.88959  6.88959  1.46634  0.26236  1.09861  0.40547
+     23   1.98545  0.65296  1.80241  1.73005     23 C ] - <
+          1.38629  1.38629  1.38629  1.38629
+          3.89386  0.02162  6.88959  3.98542  0.01876  1.09861  0.40547
+     24   1.96486  1.53408  0.55010  2.69887    118 G [ - >
+          1.38629  1.38629  1.38629  1.38629
+          0.00204  6.88959  6.88959  1.46634  0.26236  1.09861  0.40547
+     25   4.47612  0.34286  1.77423  2.21391    119 C L - >
+          1.38629  1.38629  1.38629  1.38629
+          0.00204  6.88959  6.88959  1.46634  0.26236  1.09861  0.40547
+     26   3.71435  3.19641  2.84131  0.13197    120 U p - >
+          1.38629  1.38629  1.38629  1.38629
+          0.00204  6.88959  6.88959  1.46634  0.26236  1.09861  0.40547
+     27   3.18123  2.23054  1.18098  0.60877    121 U r - >
+          1.38629  1.38629  1.38629  1.38629
+          0.00204  6.88959  6.88959  1.46634  0.26236  1.09861  0.40547
+     28   0.12234  4.14596  3.30449  2.77083    122 A i - >
+          1.38629  1.38629  1.38629  1.38629
+          0.00204  6.88959  6.88959  1.46634  0.26236  1.09861  0.40547
+     29   0.95560  2.00635  1.26122  1.62135    123 a m - >
+          1.38629  1.38629  1.38629  1.38629
+          0.00204  6.88959  6.88959  1.46634  0.26236  1.09861  0.40547
+     30   2.43472  0.49870  1.89972  1.86145    124 C ] - >
+          1.38629  1.38629  1.38629  1.38629
+          0.00204  6.88959  6.88959  1.46634  0.26236  1.09861  0.40547
+     31   2.36885  1.91431  2.24466  0.42617    125 U = - -
+          1.38629  1.38629  1.38629  1.38629
+          0.00204  6.88959  6.88959  1.46634  0.26236  1.09861  0.40547
+     32   1.99009  0.61165  1.59584  2.13601    126 C = - -
+          1.38629  1.38629  1.38629  1.38629
+          0.00204  6.88959  6.88959  1.46634  0.26236  1.09861  0.40547
+     33   1.12677  1.78023  0.92633  2.19536    127 g = - -
+          1.38629  1.38629  1.38629  1.38629
+          0.00204  6.88959  6.88959  1.46634  0.26236  1.09861  0.40547
+     34   1.00976  2.60221  0.63685  3.42260    128 G = - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03382  6.88959  3.43454  1.46634  0.26236  1.09861  0.40547
+     35   1.59086  0.80252  1.35196  2.41555    129 c = - -
+          1.38629  1.38629  1.38629  1.38629
+          0.44710  6.85787  1.02314  1.46634  0.26236  3.51631  0.03016
+     36   3.12832  0.30189  2.27881  2.16819    130 C = - -
+          1.38629  1.38629  1.38629  1.38629
+          2.11131  6.41406  0.13093  1.46634  0.26236  5.92595  0.00267
+     37   0.57651  1.86795  1.86012  2.05532    131 A = - -
+          1.38629  1.38629  1.38629  1.38629
+          0.27640  4.32946  1.47704  1.46634  0.26236  6.81245  0.00110
+     38   2.96395  2.86913  3.49326  0.14939    132 U = - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03415  4.08721  4.08721  1.46634  0.26236  6.83026  0.00108
+     39   2.96395  2.86913  3.49326  0.14939    133 U = - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03415  4.08721  4.08721  1.46634  0.26236  6.83026  0.00108
+     40   3.29366  0.12992  3.86188  2.75374    134 C = - -
+          1.38629  1.38629  1.38629  1.38629
+          0.03415  4.08721  4.08721  1.46634  0.26236  0.00967  4.64385
+     41   5.61227  6.76634  0.00620  6.58877    135 G [ - >
+          1.38629  1.38629  1.38629  1.38629
+          0.00205  6.88254  6.88254  1.46634  0.26236  0.22559  1.59970
+     42   7.50523  6.97196  6.53815  0.00294    136 U R - >
+          1.38629  1.38629  1.38629  1.38629
+          0.00204  6.88959  6.88959  1.46634  0.26236  1.09861  0.40547
+     43   7.47647  6.84256  6.54333  0.00308    137 U p - >
+          1.38629  1.38629  1.38629  1.38629
+          0.00204  6.88959  6.88959  1.46634  0.26236  1.09861  0.40547
+     44   0.12946  3.82317  2.57597  3.75121    138 A r - >
+          1.38629  1.38629  1.38629  1.38629
+          0.00204  6.88959  6.88959  1.46634  0.26236  1.09861  0.40547
+     45   1.95767  3.97633  0.44327  1.61886    139 G i - >
+          1.38629  1.38629  1.38629  1.38629
+          0.00204  6.88959  6.88959  1.46634  0.26236  1.09861  0.40547
+     46   1.46810  1.73501  0.72259  2.22795    140 g m - >
+          1.38629  1.38629  1.38629  1.38629
+          0.00204  6.88959  6.88959  1.46634  0.26236  1.09861  0.40547
+     47   2.71772  0.47057  2.52869  1.47157    141 C ] - >
+          1.38629  1.38629  1.38629  1.38629
+          0.00102  6.88857        *  1.46634  0.26236  0.00000        *
+//