Mercurial > repos > iuc > integron_finder
diff test-data/covar.txt @ 0:1ae00120dd24 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bakta/integron_finder commit 6e0d10965c02c249844f1eddd1c7442990695a6a
| author | iuc |
|---|---|
| date | Thu, 22 Sep 2022 13:51:14 +0000 |
| parents | |
| children |
line wrap: on
line diff
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/covar.txt Thu Sep 22 13:51:14 2022 +0000 @@ -0,0 +1,377 @@ +INFERNAL1/a [1.1 | October 2013] +NAME attC_4 +STATES 145 +NODES 35 +CLEN 47 +W 895 +ALPH RNA +RF yes +CONS yes +MAP yes +DATE Mon Jan 19 20:03:31 2015 +COM [1] cmbuild --hand attc_4.cm attc_train_set_4.sto +COM [2] cmcalibrate attc_4.cm +PBEGIN 0.05 +PEND 0.05 +WBETA 1e-07 +QDBBETA1 1e-07 +QDBBETA2 1e-15 +N2OMEGA 1.52588e-05 +N3OMEGA 1.52588e-05 +ELSELF -0.08926734 +NSEQ 96 +EFFN 96.000000 +CKSUM 3931512547 +NULL 0.000 0.000 0.000 0.000 +EFP7GF -9.9186 0.72993 +ECMLC 0.63005 -4.33175 4.20996 1600000 260875 0.004600 +ECMGC 0.41832 -12.02668 0.81138 1600000 85985 0.004652 +ECMLI 0.58141 -4.10957 4.92170 1600000 228880 0.005243 +ECMGI 0.42824 -10.63745 1.38026 1600000 68728 0.005820 +CM + [ ROOT 0 ] - - - - - - + S 0 -1 0 1 6 1 2 895 1874 -12.592 -12.531 -0.002 -11.308 -11.588 -11.983 + IL 1 1 2 1 6 1 6 897 1875 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 2 2 3 2 5 1 7 897 1875 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 1 ] 1 141 G C [ ] + MP 3 2 3 7 6 2 17 896 1874 -12.592 -12.531 -0.002 -11.308 -11.588 -11.983 -3.249 -1.316 -1.827 1.518 -2.413 -6.970 -1.008 -1.669 -6.771 3.266 -7.041 -1.135 -0.432 -6.231 -1.090 -5.342 + ML 4 2 3 7 6 1 4 893 1872 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 5 2 3 7 6 1 4 893 1871 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 6 2 3 7 6 0 0 887 1865 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 7 7 5 7 6 1 6 895 1873 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 8 8 6 8 5 1 6 895 1873 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 2 ] 2 140 c g R m + MP 9 8 6 13 6 2 16 894 1872 -12.592 -12.531 -0.002 -11.308 -11.588 -11.983 -4.164 -4.362 -2.109 -0.857 -0.435 -2.882 2.773 -0.766 -4.417 1.213 -4.988 -2.366 1.504 -1.682 -0.391 -1.681 + ML 10 8 6 13 6 1 4 891 1870 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 11 8 6 13 6 1 4 891 1869 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 12 8 6 13 6 0 0 885 1864 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 13 13 5 13 6 1 6 893 1871 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 14 14 6 14 5 1 6 893 1871 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 3 ] 3 139 C G s i + MP 15 14 6 19 6 2 14 892 1870 -12.592 -12.531 -0.002 -11.308 -11.588 -11.983 -1.807 -6.286 -6.486 1.123 -2.471 -7.327 3.283 -0.390 -6.409 -2.191 -2.297 -4.092 0.801 -6.656 -1.251 -2.606 + ML 16 14 6 19 6 1 4 889 1868 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 17 14 6 19 6 1 3 889 1867 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 18 14 6 19 6 0 0 884 1862 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 19 19 5 19 6 1 5 891 1869 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 20 20 6 20 5 1 5 891 1869 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 4 ] 4 138 U A e r + MP 21 20 6 25 6 2 12 890 1868 -12.592 -12.531 -0.002 -11.308 -11.588 -11.983 -1.567 -8.813 -8.434 -4.815 -1.986 -2.946 0.157 -7.792 -2.231 -2.356 -8.712 -6.694 3.739 -8.821 -4.591 -1.729 + ML 22 20 6 25 6 1 3 888 1866 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 23 20 6 25 6 1 3 887 1866 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 24 20 6 25 6 0 0 883 1861 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 25 25 5 25 6 1 5 889 1867 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 26 26 6 26 5 1 5 889 1867 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 5 ] 5 137 A U c p + MP 27 26 6 31 6 2 10 888 1867 -12.592 -12.531 -0.002 -11.308 -11.588 -11.983 -10.570 -9.997 -5.983 3.992 -11.330 -11.473 -9.053 -5.806 -10.659 -6.593 -10.896 -5.995 -9.154 -11.296 -10.137 -5.962 + ML 28 26 6 31 6 1 3 886 1864 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 29 26 6 31 6 1 3 885 1864 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 30 26 6 31 6 0 0 882 1860 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 31 31 5 31 6 1 4 887 1865 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 32 32 6 32 5 1 4 887 1865 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 6 ] 6 136 A U = R + MP 33 32 6 37 6 2 8 886 1865 -12.592 -12.531 -0.012 -7.143 -11.588 -11.983 -10.505 -9.876 -6.003 3.989 -11.293 -11.472 -8.827 -4.132 -10.570 -6.478 -10.833 -5.957 -8.965 -11.262 -10.014 -5.977 + ML 34 32 6 37 6 1 2 884 1863 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 35 32 6 37 6 1 2 884 1862 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 36 32 6 37 6 0 0 881 1859 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 37 37 5 37 6 1 3 885 1864 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 38 38 6 38 5 1 3 885 1863 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 7 ] 7 135 C G ] [ + MP 39 38 6 43 4 2 6 884 1863 -11.730 -11.937 -0.002 -10.352 -9.944 -10.195 -1.983 -6.488 -7.012 -8.577 3.966 -8.587 -9.417 -6.461 -8.627 -8.589 -4.408 -9.819 -5.380 -8.218 + ML 40 38 6 43 4 1 2 883 1861 -4.558 -4.740 -0.269 -3.470 -0.517 1.009 -1.262 -0.198 + MR 41 38 6 43 4 1 1 882 1860 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 + D 42 38 6 43 4 0 0 880 1859 -4.568 -4.250 -2.265 -0.520 + IL 43 43 5 43 4 1 3 884 1862 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 + IR 44 44 6 44 3 1 2 884 1862 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 8 ] 8 - A - = - + ML 45 44 6 47 3 1 4 882 1861 -12.654 -0.001 -11.308 1.460 -0.087 -3.247 -2.301 + D 46 44 6 47 3 0 0 880 1858 -6.174 -1.687 -0.566 + IL 47 47 3 47 3 1 2 883 1861 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 9 ] 9 - A - = - + ML 48 47 3 50 3 1 3 881 1860 -12.654 -0.001 -11.308 1.392 -0.247 -1.648 -2.219 + D 49 47 3 50 3 0 0 879 1857 -6.174 -1.687 -0.566 + IL 50 50 3 50 3 1 1 882 1860 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 10 ] 10 - g - = - + ML 51 50 3 53 3 1 2 880 1859 -12.654 -0.020 -6.196 -0.298 -0.774 0.434 0.323 + D 52 50 3 53 3 0 0 878 1856 -6.174 -1.687 -0.566 + IL 53 53 3 53 3 1 1 881 1859 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 11 ] 11 - U - = - + ML 54 53 3 56 3 1 2 879 1858 -12.635 -0.032 -5.518 -1.914 -0.835 0.163 1.039 + D 55 53 3 56 3 0 0 877 1856 -8.231 -3.744 -0.117 + IL 56 56 3 56 3 1 1 880 1858 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 12 ] 12 - C - = - + ML 57 56 3 59 3 1 1 878 1857 -12.603 -4.129 -0.085 -3.211 1.629 -0.844 -2.053 + D 58 56 3 59 3 0 0 877 1855 -9.376 -4.889 -0.052 + IL 59 59 3 59 3 1 1 883 1861 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 13 ] 13 - A - = - + ML 60 59 3 62 3 1 3 881 1860 -8.488 -0.014 -7.142 1.871 -3.422 -2.956 -3.072 + D 61 59 3 62 3 0 0 877 1855 -13.996 -9.509 -0.002 + IL 62 62 3 62 3 1 1 882 1860 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 14 ] 14 - U - = - + ML 63 62 3 65 3 1 2 880 1859 -8.488 -0.014 -7.142 -2.483 -2.313 -3.251 1.813 + D 64 62 3 65 3 0 0 877 1855 -13.996 -9.509 -0.002 + IL 65 65 3 65 3 1 1 881 1859 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 15 ] 15 - U - = - + ML 66 65 3 68 3 1 1 879 1858 -8.850 -1.462 -0.656 -2.483 -2.313 -3.251 1.813 + D 67 65 3 68 3 0 0 877 1855 -12.730 -4.483 -0.066 + IL 68 68 3 68 3 1 1 882 1861 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 + [ MATR 16 ] - 134 - C - = + MR 69 68 3 71 3 1 3 881 1859 -8.891 -0.013 -7.209 -3.099 1.851 -3.897 -2.265 + D 70 68 3 71 3 0 0 877 1855 -13.963 -9.141 -0.003 + IR 71 71 3 71 3 1 1 881 1860 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 + [ MATR 17 ] - 133 - U - = + MR 72 71 3 74 3 1 3 880 1858 -8.891 -0.013 -7.209 -2.564 -2.382 -3.335 1.824 + D 73 71 3 74 3 0 0 877 1855 -13.963 -9.141 -0.003 + IR 74 74 3 74 3 1 1 880 1859 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 + [ MATR 18 ] - 132 - U - = + MR 75 74 3 77 3 1 3 879 1857 -8.891 -0.013 -7.209 -2.564 -2.382 -3.335 1.824 + D 76 74 3 77 3 0 0 877 1855 -13.963 -5.689 -0.028 + IR 77 77 3 77 3 1 1 879 1858 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 + [ MATR 19 ] - 131 - A - = + MR 78 77 3 80 3 1 2 878 1857 -9.245 -0.010 -7.562 1.210 -0.707 -0.713 -1.109 + D 79 77 3 80 3 0 0 877 1855 -13.937 -0.765 -1.281 + IR 80 80 3 80 3 1 1 878 1857 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 + [ MATR 20 ] - 130 - C - = + MR 81 80 3 83 3 1 2 877 1856 -12.264 -0.001 -10.582 -2.570 1.571 -1.278 -1.160 + D 82 80 3 83 3 0 0 876 1854 -12.663 -0.136 -3.476 + IR 83 83 3 83 3 1 1 877 1856 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 + [ MATR 21 ] - 129 - c - = + MR 84 83 3 86 3 1 1 876 1855 -12.905 -0.001 -11.223 -0.302 0.852 0.055 -1.536 + D 85 83 3 86 3 0 0 875 1853 -9.257 -0.137 -3.487 + IR 86 86 3 86 3 1 1 876 1855 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 + [ MATR 22 ] - 128 - G - = + MR 87 86 3 89 3 1 1 875 1854 -12.951 -0.001 -11.268 0.549 -1.760 1.082 -2.997 + D 88 86 3 89 3 0 0 872 1851 -6.390 -1.568 -0.620 + IR 89 89 3 89 3 1 1 875 1854 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 + [ MATR 23 ] - 127 - g - = + MR 90 89 3 92 3 1 1 874 1853 -12.951 -0.001 -11.268 0.377 -0.568 0.671 -1.199 + D 91 89 3 92 3 0 0 871 1850 -6.390 -1.568 -0.620 + IR 92 92 3 92 3 1 1 874 1853 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 + [ MATR 24 ] - 126 - C - = + MR 93 92 3 95 3 1 1 873 1852 -12.951 -0.001 -11.268 -0.886 1.126 -0.297 -1.112 + D 94 92 3 95 3 0 0 870 1849 -6.390 -1.568 -0.620 + IR 95 95 3 95 3 1 1 873 1852 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 + [ MATR 25 ] - 125 - U - = + MR 96 95 3 98 5 1 1 872 1851 -11.595 -0.002 -11.410 -11.622 -12.514 -1.444 -0.765 -1.243 1.390 + D 97 95 3 98 5 0 0 869 1848 -5.352 -0.707 -2.978 -4.409 -2.404 + IR 98 98 3 98 5 1 1 872 1850 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 26 ] 16 124 G C [ ] + MP 99 98 3 103 6 2 2 871 1850 -12.592 -12.531 -0.002 -11.308 -11.588 -11.983 -6.582 -1.557 -6.411 1.191 -7.476 -1.489 1.101 -7.084 -6.836 3.115 -2.324 -2.899 0.456 -1.331 -4.597 -5.381 + ML 100 98 3 103 6 1 1 869 1847 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 101 98 3 103 6 1 1 867 1846 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 102 98 3 103 6 0 0 863 1841 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 103 103 5 103 6 1 1 870 1848 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 104 104 6 104 5 1 1 870 1848 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 27 ] 17 123 u a = m + MP 105 104 6 109 6 2 2 869 1848 -12.592 -12.531 -0.002 -11.308 -11.588 -11.983 -0.828 -4.312 -4.303 1.181 -4.254 -3.025 2.046 -3.077 -4.365 0.739 -4.937 -2.958 2.474 -1.830 -1.666 -0.703 + ML 106 104 6 109 6 1 1 867 1845 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 107 104 6 109 6 1 1 865 1843 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 108 104 6 109 6 0 0 861 1840 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 109 109 5 109 6 1 1 868 1846 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 110 110 6 110 5 1 1 868 1846 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 28 ] 18 122 U A L i + MP 111 110 6 115 4 2 2 867 1846 -11.741 -11.948 -0.002 -10.362 -0.702 -9.034 -2.124 -0.041 0.340 -9.011 -1.841 -8.027 -8.700 -2.090 -8.930 -6.877 3.625 -9.170 -4.866 -7.506 + ML 112 110 6 115 4 1 1 865 1844 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 + MR 113 110 6 115 4 1 1 862 1841 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 + D 114 110 6 115 4 0 0 860 1839 -4.568 -4.250 -2.265 -0.520 + IL 115 115 5 115 4 1 1 867 1845 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 + IR 116 116 6 116 3 1 1 866 1845 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 29 ] 19 - C - s - + ML 117 116 6 119 5 1 1 865 1844 -11.595 -0.002 -11.410 -11.622 -12.514 -2.365 1.152 0.068 -0.902 + D 118 116 6 119 5 0 0 858 1836 -4.959 -0.803 -4.221 -2.596 -2.508 + IL 119 119 3 119 5 1 1 864 1842 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 + [ MATP 30 ] 20 121 A U e r + MP 120 119 3 124 6 2 2 864 1843 -12.592 -12.531 -0.002 -11.308 -11.588 -11.983 -1.884 -7.244 -7.809 3.089 -6.922 -8.680 2.277 -2.136 -7.694 0.753 -8.160 -4.763 -1.577 -8.142 -4.435 -6.477 + ML 121 119 3 124 6 1 1 856 1834 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 122 119 3 124 6 1 1 853 1831 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 123 119 3 124 6 0 0 837 1815 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 124 124 5 124 6 1 1 861 1840 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 125 125 6 125 5 1 1 861 1840 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 31 ] 21 120 A U c p + MP 126 125 6 130 6 2 2 862 1841 -12.592 -12.531 -0.002 -11.308 -11.588 -11.983 -8.851 -7.764 -2.118 3.793 -8.437 -10.138 -0.570 -2.650 -8.525 -0.651 -9.020 -5.124 -1.428 -9.742 -6.081 -7.490 + ML 127 125 6 130 6 1 1 850 1829 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 128 125 6 130 6 1 1 847 1826 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 129 125 6 130 6 0 0 831 1809 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 130 130 5 130 6 1 1 859 1837 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 131 131 6 131 5 1 1 859 1837 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 32 ] 22 119 G C = L + MP 132 131 6 136 6 2 2 860 1839 -12.592 -12.531 -0.002 -11.308 -11.588 -11.983 -6.681 -0.356 -6.503 0.360 -7.617 -1.551 1.417 -1.964 -6.924 3.364 -7.172 -2.953 -2.958 -6.355 -4.698 -5.467 + ML 133 131 6 136 6 1 1 841 1819 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 134 131 6 136 6 1 1 838 1816 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 135 131 6 136 6 0 0 825 1803 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 136 136 5 136 6 1 1 856 1834 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 137 137 6 137 5 1 1 856 1834 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 33 ] 23 118 c g ] [ + MP 138 137 6 142 3 2 2 858 1837 -0.007 * -7.643 -0.812 -0.317 -2.510 -0.729 -4.140 -1.090 2.981 -4.503 -4.225 0.880 -1.072 -2.070 0.595 -1.518 -0.284 -3.425 + ML 139 137 6 142 3 1 1 821 1799 -1.000 * -1.000 0.368 -0.385 -0.191 0.094 + MR 140 137 6 142 3 1 1 821 1799 -1.000 * -1.000 0.368 -0.385 -0.191 0.094 + D 141 137 6 142 3 0 0 820 1798 -1.000 * -1.000 + IL 142 142 5 142 3 1 1 857 1835 -0.027 * -5.744 0.000 0.000 0.000 0.000 + IR 143 143 6 143 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 + [ END 34 ] - - - - - - + E 144 143 6 -1 0 0 0 0 0 +// +HMMER3/f [i1.1 | October 2013] +NAME attC_4 +LENG 47 +MAXL 899 +ALPH RNA +RF yes +MM no +CONS yes +CS yes +MAP yes +DATE Mon Jan 19 20:03:31 2015 +COM [1] cmbuild --hand attc_4.cm attc_train_set_4.sto +NSEQ 96 +EFFN 81.594727 +CKSUM 3931512547 +STATS LOCAL MSV -8.0165 0.72993 +STATS LOCAL VITERBI -8.5470 0.72993 +STATS LOCAL FORWARD -2.8542 0.72993 +HMM A C G U + m->m m->i m->d i->m i->i d->m d->d + COMPO 1.36592 1.36257 1.42708 1.39094 + 1.38629 1.38629 1.38629 1.38629 + 0.00204 6.88959 6.88959 1.46634 0.26236 0.00000 * + 1 1.47847 2.74840 0.46402 2.53536 1 G [ - < + 1.38629 1.38629 1.38629 1.38629 + 0.00204 6.88959 6.88959 1.46634 0.26236 1.09861 0.40547 + 2 2.80092 0.67279 1.80861 1.32771 2 C R - < + 1.38629 1.38629 1.38629 1.38629 + 0.00204 6.88959 6.88959 1.46634 0.26236 1.09861 0.40547 + 3 1.85804 0.41549 3.36842 1.90005 3 C s - < + 1.38629 1.38629 1.38629 1.38629 + 0.00204 6.88959 6.88959 1.46634 0.26236 1.09861 0.40547 + 4 3.69371 2.33806 3.58381 0.16154 4 U e - < + 1.38629 1.38629 1.38629 1.38629 + 0.00204 6.88959 6.88959 1.46634 0.26236 1.09861 0.40547 + 5 0.00512 6.50309 6.16068 6.50100 5 A c - < + 1.38629 1.38629 1.38629 1.38629 + 0.00204 6.88959 6.88959 1.46634 0.26236 1.09861 0.40547 + 6 0.00672 5.72139 6.25551 6.50195 6 A = - < + 1.38629 1.38629 1.38629 1.38629 + 0.00204 6.88959 6.88959 1.46634 0.26236 1.09861 0.40547 + 7 4.27255 0.02200 6.25809 5.13253 7 C ] - < + 1.38629 1.38629 1.38629 1.38629 + 0.00204 6.88959 6.88959 1.46634 0.26236 1.09861 0.40547 + 8 0.37524 1.45216 3.61000 2.96117 8 A = - - + 1.38629 1.38629 1.38629 1.38629 + 0.00204 6.88959 6.88959 1.46634 0.26236 1.09861 0.40547 + 9 0.42348 1.56183 2.52300 2.89563 9 A = - - + 1.38629 1.38629 1.38629 1.38629 + 0.00204 6.88959 6.88959 1.46634 0.26236 1.09861 0.40547 + 10 1.58522 1.91861 1.09174 1.16265 10 g = - - + 1.38629 1.38629 1.38629 1.38629 + 0.01535 6.88959 4.25350 1.46634 0.26236 1.09861 0.40547 + 11 2.67081 1.96038 1.27856 0.67029 11 U = - - + 1.38629 1.38629 1.38629 1.38629 + 0.02368 6.87631 3.79983 1.46634 0.26236 2.77000 0.06471 + 12 3.57863 0.25850 1.98007 2.78364 12 C = - - + 1.38629 1.38629 1.38629 1.38629 + 2.83122 6.85473 0.06187 1.46634 0.26236 3.60115 0.02767 + 13 0.11057 3.55402 3.24839 3.29069 13 A = - - + 1.38629 1.38629 1.38629 1.38629 + 0.03515 4.05867 4.05867 1.46634 0.26236 6.83206 0.00108 + 14 2.90925 2.82331 3.43701 0.15793 14 U = - - + 1.38629 1.38629 1.38629 1.38629 + 0.03515 4.05867 4.05867 1.46634 0.26236 6.83206 0.00108 + 15 2.90925 2.82331 3.43701 0.15793 15 U = - - + 1.38629 1.38629 1.38629 1.38629 + 0.03515 4.05867 4.05867 1.46634 0.26236 0.00216 6.13892 + 16 1.79396 1.85607 0.57562 2.16230 16 G [ - < + 1.38629 1.38629 1.38629 1.38629 + 0.00204 6.88959 6.88959 1.46634 0.26236 1.09861 0.40547 + 17 1.68938 1.29005 2.11445 0.86890 17 u = - < + 1.38629 1.38629 1.38629 1.38629 + 0.00204 6.88959 6.88959 1.46634 0.26236 1.09861 0.40547 + 18 2.17270 2.31497 4.10529 0.26023 18 U L - < + 1.38629 1.38629 1.38629 1.38629 + 0.00204 6.88959 6.88959 1.46634 0.26236 1.09861 0.40547 + 19 2.98995 0.59134 1.34531 1.99756 19 C s - - + 1.38629 1.38629 1.38629 1.38629 + 0.00204 6.88959 6.88959 1.46634 0.26236 1.09861 0.40547 + 20 0.60908 1.14694 2.20721 3.55669 20 A e - < + 1.38629 1.38629 1.38629 1.38629 + 0.00204 6.88959 6.88959 1.46634 0.26236 1.09861 0.40547 + 21 0.12915 2.93836 3.14908 3.67645 21 A c - < + 1.38629 1.38629 1.38629 1.38629 + 0.00204 6.88959 6.88959 1.46634 0.26236 1.09861 0.40547 + 22 2.02391 1.59657 0.43035 4.20022 22 G = - < + 1.38629 1.38629 1.38629 1.38629 + 0.00204 6.88959 6.88959 1.46634 0.26236 1.09861 0.40547 + 23 1.98545 0.65296 1.80241 1.73005 23 C ] - < + 1.38629 1.38629 1.38629 1.38629 + 3.89386 0.02162 6.88959 3.98542 0.01876 1.09861 0.40547 + 24 1.96486 1.53408 0.55010 2.69887 118 G [ - > + 1.38629 1.38629 1.38629 1.38629 + 0.00204 6.88959 6.88959 1.46634 0.26236 1.09861 0.40547 + 25 4.47612 0.34286 1.77423 2.21391 119 C L - > + 1.38629 1.38629 1.38629 1.38629 + 0.00204 6.88959 6.88959 1.46634 0.26236 1.09861 0.40547 + 26 3.71435 3.19641 2.84131 0.13197 120 U p - > + 1.38629 1.38629 1.38629 1.38629 + 0.00204 6.88959 6.88959 1.46634 0.26236 1.09861 0.40547 + 27 3.18123 2.23054 1.18098 0.60877 121 U r - > + 1.38629 1.38629 1.38629 1.38629 + 0.00204 6.88959 6.88959 1.46634 0.26236 1.09861 0.40547 + 28 0.12234 4.14596 3.30449 2.77083 122 A i - > + 1.38629 1.38629 1.38629 1.38629 + 0.00204 6.88959 6.88959 1.46634 0.26236 1.09861 0.40547 + 29 0.95560 2.00635 1.26122 1.62135 123 a m - > + 1.38629 1.38629 1.38629 1.38629 + 0.00204 6.88959 6.88959 1.46634 0.26236 1.09861 0.40547 + 30 2.43472 0.49870 1.89972 1.86145 124 C ] - > + 1.38629 1.38629 1.38629 1.38629 + 0.00204 6.88959 6.88959 1.46634 0.26236 1.09861 0.40547 + 31 2.36885 1.91431 2.24466 0.42617 125 U = - - + 1.38629 1.38629 1.38629 1.38629 + 0.00204 6.88959 6.88959 1.46634 0.26236 1.09861 0.40547 + 32 1.99009 0.61165 1.59584 2.13601 126 C = - - + 1.38629 1.38629 1.38629 1.38629 + 0.00204 6.88959 6.88959 1.46634 0.26236 1.09861 0.40547 + 33 1.12677 1.78023 0.92633 2.19536 127 g = - - + 1.38629 1.38629 1.38629 1.38629 + 0.00204 6.88959 6.88959 1.46634 0.26236 1.09861 0.40547 + 34 1.00976 2.60221 0.63685 3.42260 128 G = - - + 1.38629 1.38629 1.38629 1.38629 + 0.03382 6.88959 3.43454 1.46634 0.26236 1.09861 0.40547 + 35 1.59086 0.80252 1.35196 2.41555 129 c = - - + 1.38629 1.38629 1.38629 1.38629 + 0.44710 6.85787 1.02314 1.46634 0.26236 3.51631 0.03016 + 36 3.12832 0.30189 2.27881 2.16819 130 C = - - + 1.38629 1.38629 1.38629 1.38629 + 2.11131 6.41406 0.13093 1.46634 0.26236 5.92595 0.00267 + 37 0.57651 1.86795 1.86012 2.05532 131 A = - - + 1.38629 1.38629 1.38629 1.38629 + 0.27640 4.32946 1.47704 1.46634 0.26236 6.81245 0.00110 + 38 2.96395 2.86913 3.49326 0.14939 132 U = - - + 1.38629 1.38629 1.38629 1.38629 + 0.03415 4.08721 4.08721 1.46634 0.26236 6.83026 0.00108 + 39 2.96395 2.86913 3.49326 0.14939 133 U = - - + 1.38629 1.38629 1.38629 1.38629 + 0.03415 4.08721 4.08721 1.46634 0.26236 6.83026 0.00108 + 40 3.29366 0.12992 3.86188 2.75374 134 C = - - + 1.38629 1.38629 1.38629 1.38629 + 0.03415 4.08721 4.08721 1.46634 0.26236 0.00967 4.64385 + 41 5.61227 6.76634 0.00620 6.58877 135 G [ - > + 1.38629 1.38629 1.38629 1.38629 + 0.00205 6.88254 6.88254 1.46634 0.26236 0.22559 1.59970 + 42 7.50523 6.97196 6.53815 0.00294 136 U R - > + 1.38629 1.38629 1.38629 1.38629 + 0.00204 6.88959 6.88959 1.46634 0.26236 1.09861 0.40547 + 43 7.47647 6.84256 6.54333 0.00308 137 U p - > + 1.38629 1.38629 1.38629 1.38629 + 0.00204 6.88959 6.88959 1.46634 0.26236 1.09861 0.40547 + 44 0.12946 3.82317 2.57597 3.75121 138 A r - > + 1.38629 1.38629 1.38629 1.38629 + 0.00204 6.88959 6.88959 1.46634 0.26236 1.09861 0.40547 + 45 1.95767 3.97633 0.44327 1.61886 139 G i - > + 1.38629 1.38629 1.38629 1.38629 + 0.00204 6.88959 6.88959 1.46634 0.26236 1.09861 0.40547 + 46 1.46810 1.73501 0.72259 2.22795 140 g m - > + 1.38629 1.38629 1.38629 1.38629 + 0.00204 6.88959 6.88959 1.46634 0.26236 1.09861 0.40547 + 47 2.71772 0.47057 2.52869 1.47157 141 C ] - > + 1.38629 1.38629 1.38629 1.38629 + 0.00102 6.88857 * 1.46634 0.26236 0.00000 * +//