Mercurial > repos > iuc > integron_finder
diff test-data/test8_integrons_table.tsv @ 2:392f100eebcd draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/integron_finder commit bf94533e76d4253a734333e33c2f14f6634f0e79
| author | iuc |
|---|---|
| date | Sun, 25 Feb 2024 16:08:08 +0000 |
| parents | 1ae00120dd24 |
| children | bfd290fe1588 |
line wrap: on
line diff
--- a/test-data/test8_integrons_table.tsv Fri Feb 17 18:36:09 2023 +0000 +++ b/test-data/test8_integrons_table.tsv Sun Feb 25 16:08:08 2024 +0000 @@ -1,10 +1,10 @@ -# cmd: integron_finder /tmp/tmp3_ir6t5a/files/e/4/5/dataset_e459a473-6554-4525-9ec1-505e63711366.dat --cpu 1 --keep-tmp -dt 4000 --calin-threshold 2 --max-attc-size 200 --min-attc-size 40 --attc-model /tmp/tmp3_ir6t5a/files/3/0/3/dataset_303db187-2a98-45e2-8c99-3d5694175a98.dat +# cmd: integron_finder /tmp/tmpx8hgxvv4/files/5/9/0/dataset_590dbd5b-cca8-402e-84b0-5e38a7557de0.dat --cpu 1 --keep-tmp -dt 4000 --calin-threshold 2 --max-attc-size 200 --min-attc-size 40 --attc-model /tmp/tmpx8hgxvv4/files/c/0/1/dataset_c0189f7e-8116-49cb-a925-803cedaa57d7.dat ID_integron ID_replicon element pos_beg pos_end strand evalue type_elt annotation model type default distance_2attC considered_topology -integron_01 ACBA.007.P01_13 ACBA.007.P01_13_1 55 1014 1 1.9000000000000001e-25 protein intI intersection_tyr_intI complete Yes NA circ +integron_01 ACBA.007.P01_13 ACBA.007.P01_13_1 55 1014 1 1.9e-25 protein intI intersection_tyr_intI complete Yes NA circ integron_01 ACBA.007.P01_13 ACBA.007.P01_13_20 17375 17722 -1 NA protein protein NA complete Yes NA circ -integron_01 ACBA.007.P01_13 attc_001 17825 17884 -1 1e-09 attC attC dataset_303db187-2a98-45e2-8c99-3d5694175a98 complete Yes NA circ +integron_01 ACBA.007.P01_13 attc_001 17825 17884 -1 1e-09 attC attC dataset_c0189f7e-8116-49cb-a925-803cedaa57d7 complete Yes NA circ integron_01 ACBA.007.P01_13 ACBA.007.P01_13_21 17886 18665 -1 NA protein protein NA complete Yes NA circ -integron_01 ACBA.007.P01_13 attc_002 19080 19149 -1 0.0001 attC attC dataset_303db187-2a98-45e2-8c99-3d5694175a98 complete Yes 1196.0 circ +integron_01 ACBA.007.P01_13 attc_002 19080 19149 -1 0.0001 attC attC dataset_c0189f7e-8116-49cb-a925-803cedaa57d7 complete Yes 1196.0 circ integron_01 ACBA.007.P01_13 ACBA.007.P01_13_22 19090 19749 -1 NA protein protein NA complete Yes NA circ -integron_01 ACBA.007.P01_13 attc_003 19618 19726 -1 1.1e-07 attC attC dataset_303db187-2a98-45e2-8c99-3d5694175a98 complete Yes 469.0 circ +integron_01 ACBA.007.P01_13 attc_003 19618 19726 -1 1.1e-07 attC attC dataset_c0189f7e-8116-49cb-a925-803cedaa57d7 complete Yes 469.0 circ integron_01 ACBA.007.P01_13 ACBA.007.P01_13_23 19721 20254 -1 NA protein protein NA complete Yes NA circ