Mercurial > repos > iuc > integron_finder

view test-data/test2_integrons_table.tsv @ 2:392f100eebcd draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/integron_finder commit bf94533e76d4253a734333e33c2f14f6634f0e79
author iuc
date Sun, 25 Feb 2024 16:08:08 +0000
parents 1ae00120dd24
children bfd290fe1588
line wrap: on
line source

# cmd: integron_finder /tmp/tmpx8hgxvv4/files/9/c/7/dataset_9c7b9167-33f0-4cb0-8bad-0edb132a2f75.dat --cpu 1 --keep-tmp --local-max --linear -dt 4000 --calin-threshold 2 --max-attc-size 200 --min-attc-size 40
ID_integron	ID_replicon	element	pos_beg	pos_end	strand	evalue	type_elt	annotation	model	type	default	distance_2attC	considered_topology
integron_01	ACBA.007.P01_13	ACBA.007.P01_13_1	55	1014	1	1.9e-25	protein	intI	intersection_tyr_intI	In0	No	NA	lin
integron_02	ACBA.007.P01_13	ACBA.007.P01_13_20	17375	17722	-1	NA	protein	protein	NA	CALIN	No	NA	lin
integron_02	ACBA.007.P01_13	attc_001	17825	17884	-1	5.1e-10	attC	attC	attc_4	CALIN	No	NA	lin
integron_02	ACBA.007.P01_13	ACBA.007.P01_13_21	17886	18665	-1	NA	protein	protein	NA	CALIN	No	NA	lin
integron_02	ACBA.007.P01_13	attc_002	18681	18749	-1	0.016	attC	attC	attc_4	CALIN	No	797.0	lin
integron_02	ACBA.007.P01_13	attc_003	19079	19149	-1	3.3e-05	attC	attC	attc_4	CALIN	No	330.0	lin
integron_02	ACBA.007.P01_13	ACBA.007.P01_13_22	19090	19749	-1	NA	protein	protein	NA	CALIN	No	NA	lin
integron_02	ACBA.007.P01_13	attc_004	19618	19726	-1	5.5e-08	attC	attC	attc_4	CALIN	No	469.0	lin
integron_02	ACBA.007.P01_13	ACBA.007.P01_13_23	19721	20254	-1	NA	protein	protein	NA	CALIN	No	NA	lin