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view test-data/test5_integrons_table.tsv @ 2:392f100eebcd draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/integron_finder commit bf94533e76d4253a734333e33c2f14f6634f0e79
author iuc
date Sun, 25 Feb 2024 16:08:08 +0000
parents 1ae00120dd24
children bfd290fe1588
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# cmd: integron_finder /tmp/tmpx8hgxvv4/files/f/5/6/dataset_f56693b9-7a23-459d-b14d-f33b5dbcd9cc.dat --cpu 1 --keep-tmp --promoter-attI -dt 4000 --calin-threshold 2 --max-attc-size 200 --min-attc-size 40
ID_integron	ID_replicon	element	pos_beg	pos_end	strand	evalue	type_elt	annotation	model	type	default	distance_2attC	considered_topology
integron_01	ACBA.007.P01_13	Pc_int1	25	51	-1	NA	Promoter	Pc_1	NA	complete	Yes	NA	circ
integron_01	ACBA.007.P01_13	ACBA.007.P01_13_1	55	1014	1	1.9e-25	protein	intI	intersection_tyr_intI	complete	Yes	NA	circ
integron_01	ACBA.007.P01_13	ACBA.007.P01_13_20	17375	17722	-1	NA	protein	protein	NA	complete	Yes	NA	circ
integron_01	ACBA.007.P01_13	attc_001	17825	17884	-1	1e-09	attC	attC	attc_4	complete	Yes	NA	circ
integron_01	ACBA.007.P01_13	ACBA.007.P01_13_21	17886	18665	-1	NA	protein	protein	NA	complete	Yes	NA	circ
integron_01	ACBA.007.P01_13	attc_002	19080	19149	-1	0.0001	attC	attC	attc_4	complete	Yes	1196.0	circ
integron_01	ACBA.007.P01_13	ACBA.007.P01_13_22	19090	19749	-1	NA	protein	protein	NA	complete	Yes	NA	circ
integron_01	ACBA.007.P01_13	attc_003	19618	19726	-1	1.1e-07	attC	attC	attc_4	complete	Yes	469.0	circ
integron_01	ACBA.007.P01_13	ACBA.007.P01_13_23	19721	20254	-1	NA	protein	protein	NA	complete	Yes	NA	circ