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planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/integron_finder commit cbb56e087d23446b8159622e2e4b7a709c8529ad
author iuc
date Fri, 14 Jun 2024 21:19:29 +0000
parents 392f100eebcd
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# integron_finder 2.0.5 
# cmd: integron_finder /tmp/tmphy8ici_1/files/5/e/e/dataset_5eeb02f0-3703-48bc-a3a4-d7b4b476cf46.dat --cpu 1 --keep-tmp -dt 4000 --calin-threshold 2 --max-attc-size 200 --min-attc-size 40 --no-proteins
ID_integron	ID_replicon	element	pos_beg	pos_end	strand	evalue	type_elt	annotation	model	type	default	distance_2attC	considered_topology
integron_01	ACBA.007.P01_13	attc_001	17825	17884	-1	1e-09	attC	attC	attc_4	CALIN	Yes	NA	circ
integron_01	ACBA.007.P01_13	attc_002	19080	19149	-1	0.0001	attC	attC	attc_4	CALIN	Yes	1196.0	circ
integron_01	ACBA.007.P01_13	attc_003	19618	19726	-1	1.1e-07	attC	attC	attc_4	CALIN	Yes	469.0	circ