Mercurial > repos > iuc > interval2maf

comparison test-data/interval2maf-out1.maf @ 3:7adddc6015c1 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/interval2maf/ commit a59b05dd4a79b1b4e14ab1d78202c07a889ab023
author iuc
date Sat, 22 Apr 2023 20:08:40 +0000
parents 1080e07a2233
children
comparison
equal deleted inserted replaced
2:1080e07a2233 3:7adddc6015c1
664 i mm10.chr16 C 0 C 0 664 i mm10.chr16 C 0 C 0
665 665
666 a score=6521322.0 666 a score=6521322.0
667 s hg38.chr22 21635217 49 + 50818468 CTCCCCCTCCATGTCTAGTGC---CCAGGTGGCCACCAGATTCAAACTCAAG 667 s hg38.chr22 21635217 49 + 50818468 CTCCCCCTCCATGTCTAGTGC---CCAGGTGGCCACCAGATTCAAACTCAAG
668 s eulFla1.LGHW01001899v1 119076 49 + 262521 CTCCCCCTCCACGTCTAATGC---CCAGATCGCCACCAAATTCAGGCTCAAG 668 s eulFla1.LGHW01001899v1 119076 49 + 262521 CTCCCCCTCCACGTCTAATGC---CCAGATCGCCACCAAATTCAGGCTCAAG
669 i eulFla1.LGHW01001899v1 I 1 C 0
669 s mm10.chr16 81066123 46 - 98207768 ------CTCCCCACCTAATGCAGTCCAGATGGCTACCAGATTCAGGCTCAAG 670 s mm10.chr16 81066123 46 - 98207768 ------CTCCCCACCTAATGCAGTCCAGATGGCTACCAGATTCAGGCTCAAG
671 i mm10.chr16 C 0 C 0
670 672
671 a score=31953654.0 673 a score=31953654.0
672 s hg38.chr22 21634684 360 + 50818468 AAAGGCCTCAGTCAGTCCTGCTCCCAGAGGGACTCCCTGCTGTGGGATTCGCTGGGTAGCCAGACCAGCTTTCAGTGGACACAGGAGCAGCCCTTGTCCTGGTTCTCAGGGCTGCTGGGCTCAAGCTCTGGCGTGCCTGAAGCATCAGAGCCGAGGCCTGGAGAACAGGAGCCAATCTTCCGCAAGCGAGAGTTCAATAAGGAGATCAAGTCATTACTGAGCCAGCTGGAGTCCCTCGACCTGCCTGGCTACTGTCCGCTCCGTGAGCCCCATCGCACGCTGAACTTCCTGGCTGACCACCGCCTCTTCCCTGCCCTGCAAAGCGTGGTCAGCCAGGCTGTGGATAAGCTCCGTGGCGCC 674 s hg38.chr22 21634684 360 + 50818468 AAAGGCCTCAGTCAGTCCTGCTCCCAGAGGGACTCCCTGCTGTGGGATTCGCTGGGTAGCCAGACCAGCTTTCAGTGGACACAGGAGCAGCCCTTGTCCTGGTTCTCAGGGCTGCTGGGCTCAAGCTCTGGCGTGCCTGAAGCATCAGAGCCGAGGCCTGGAGAACAGGAGCCAATCTTCCGCAAGCGAGAGTTCAATAAGGAGATCAAGTCATTACTGAGCCAGCTGGAGTCCCTCGACCTGCCTGGCTACTGTCCGCTCCGTGAGCCCCATCGCACGCTGAACTTCCTGGCTGACCACCGCCTCTTCCCTGCCCTGCAAAGCGTGGTCAGCCAGGCTGTGGATAAGCTCCGTGGCGCC
673 s eulFla1.LGHW01001899v1 118501 357 + 262521 AAAGGCCTGAGTCAGTCCTGCTCCC---AGGACTCCCTGCTGTGGGACTCGCTGGGCAGCCAGACCAGCAGCCAGTGGACCCAGGAGCAGCCCCTGTCGTGGTTCTCAGGGCTGCTGGACTCAAGTTCAGGCACACCGGAAGCGTCAGTGCTGGGGCCTAGAGAGCGCGAGCTGATCTTCCTCAAGCCGGAGTTCAACAAGGACATCAAGTCGCTACTGAACCAGCCGACATCCTTCAACCCGCCTGGCTACTGTTCACTCCGGCAGCCCCATCGCACCCTGGACTTCCTGGCCAAGCACCACCTCTTCCCCGCCCTGCAGGGTGTGGTCAGCCAGGCTGTGGACAAGCTCAGTGGCGCC 675 s eulFla1.LGHW01001899v1 118501 357 + 262521 AAAGGCCTGAGTCAGTCCTGCTCCC---AGGACTCCCTGCTGTGGGACTCGCTGGGCAGCCAGACCAGCAGCCAGTGGACCCAGGAGCAGCCCCTGTCGTGGTTCTCAGGGCTGCTGGACTCAAGTTCAGGCACACCGGAAGCGTCAGTGCTGGGGCCTAGAGAGCGCGAGCTGATCTTCCTCAAGCCGGAGTTCAACAAGGACATCAAGTCGCTACTGAACCAGCCGACATCCTTCAACCCGCCTGGCTACTGTTCACTCCGGCAGCCCCATCGCACCCTGGACTTCCTGGCCAAGCACCACCTCTTCCCCGCCCTGCAGGGTGTGGTCAGCCAGGCTGTGGACAAGCTCAGTGGCGCC
674 i eulFla1.LGHW01001899v1 C 0 C 0 676 i eulFla1.LGHW01001899v1 C 0 C 0
931 i mm10.chr16 C 0 C 0 933 i mm10.chr16 C 0 C 0
932 934
933 a score=5438213.0 935 a score=5438213.0
934 s hg38.chr22 23394222 60 + 50818468 ATGGCGAGCATGGCAGTGAGCCCCCCACGCCCCACTCTGGGTCTGGAGACCAGCCCCCCA 936 s hg38.chr22 23394222 60 + 50818468 ATGGCGAGCATGGCAGTGAGCCCCCCACGCCCCACTCTGGGTCTGGAGACCAGCCCCCCA
935 s mm10.chr16 18219555 48 + 98207768 ATG------ATGGAGGTAAGTCCCC---ACCCCATTCCTGCT---GATTCCAGCGTCCCC 937 s mm10.chr16 18219555 48 + 98207768 ATG------ATGGAGGTAAGTCCCC---ACCCCATTCCTGCT---GATTCCAGCGTCCCC
938 i mm10.chr16 C 0 C 0
936 939
937 a score=5438213.0 940 a score=5438213.0
938 s hg38.chr22 23394222 60 + 50818468 ATGGCGAGCATGGCAGTGAGCCCCCCACGCCCCACTCTGGGTCTGGAGACCAGCCCCCCA 941 s hg38.chr22 23394222 60 + 50818468 ATGGCGAGCATGGCAGTGAGCCCCCCACGCCCCACTCTGGGTCTGGAGACCAGCCCCCCA
939 s mm10.chr16 18219555 48 + 98207768 ATG------ATGGAGGTAAGTCCCC---ACCCCATTCCTGCT---GATTCCAGCGTCCCC 942 s mm10.chr16 18219555 48 + 98207768 ATG------ATGGAGGTAAGTCCCC---ACCCCATTCCTGCT---GATTCCAGCGTCCCC
940 i mm10.chr16 C 0 C 0 943 i mm10.chr16 C 0 C 0
2344 s hg38.chr22 35727139 55 + 50818468 TGTTCCAGCTCCCGGGGCAGGGCTGTTCGAGGATCCCGTGTGGTTAAACCAGAAG 2347 s hg38.chr22 35727139 55 + 50818468 TGTTCCAGCTCCCGGGGCAGGGCTGTTCGAGGATCCCGTGTGGTTAAACCAGAAG
2345 2348
2346 a score=799075.0 2349 a score=799075.0
2347 s hg38.chr22 35726271 16 + 50818468 TGATGAGGCTGGTATG 2350 s hg38.chr22 35726271 16 + 50818468 TGATGAGGCTGGTATG
2348 s eulFla1.LGHW01001967v1 331202 16 + 548553 TGAAGAGGCTAGCGTG 2351 s eulFla1.LGHW01001967v1 331202 16 + 548553 TGAAGAGGCTAGCGTG
2352 i eulFla1.LGHW01001967v1 C 0 C 0
2349 2353
2350 a score=799075.0 2354 a score=799075.0
2351 s hg38.chr22 35726271 16 + 50818468 TGATGAGGCTGGTATG 2355 s hg38.chr22 35726271 16 + 50818468 TGATGAGGCTGGTATG
2352 s eulFla1.LGHW01001967v1 331202 16 + 548553 TGAAGAGGCTAGCGTG 2356 s eulFla1.LGHW01001967v1 331202 16 + 548553 TGAAGAGGCTAGCGTG
2353 i eulFla1.LGHW01001967v1 C 0 C 0 2357 i eulFla1.LGHW01001967v1 C 0 C 0
2593 2597
2594 a score=668337.0 2598 a score=668337.0
2595 s hg38.chr22 35727139 55 + 50818468 TGTTCCAGCTCCCGGGGCAGGGCTGTTCGAGGATCCCGTGTGGTTAAACCAGAAG 2599 s hg38.chr22 35727139 55 + 50818468 TGTTCCAGCTCCCGGGGCAGGGCTGTTCGAGGATCCCGTGTGGTTAAACCAGAAG
2596 2600
2597 a score=799075.0 2601 a score=799075.0
2598 s hg38.chr22 35726284 3 + 50818468 ATG 2602 s hg38.chr22 35726284 3 + 50818468 ATG
2599 s eulFla1.LGHW01001967v1 331215 3 + 548553 GTG 2603 s eulFla1.LGHW01001967v1 331215 3 + 548553 GTG
2604 i eulFla1.LGHW01001967v1 C 0 C 0
2600 2605
2601 a score=799075.0 2606 a score=799075.0
2602 s hg38.chr22 35726284 3 + 50818468 ATG 2607 s hg38.chr22 35726284 3 + 50818468 ATG
2603 s eulFla1.LGHW01001967v1 331215 3 + 548553 GTG 2608 s eulFla1.LGHW01001967v1 331215 3 + 548553 GTG
2609 i eulFla1.LGHW01001967v1 C 0 C 0
2604 2610
2605 a score=799075.0 2611 a score=799075.0
2606 s hg38.chr22 35726284 3 + 50818468 ATG 2612 s hg38.chr22 35726284 3 + 50818468 ATG
2607 s eulFla1.LGHW01001967v1 331215 3 + 548553 GTG 2613 s eulFla1.LGHW01001967v1 331215 3 + 548553 GTG
2608 i eulFla1.LGHW01001967v1 C 0 C 0 2614 i eulFla1.LGHW01001967v1 C 0 C 0