Mercurial > repos > iuc > interval2maf

diff interval2maf.xml @ 2:1080e07a2233 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/interval2maf/ commit 9f522562ca2048b8bafa3404abf3f930f72f7f05
author iuc
date Wed, 09 Nov 2022 12:34:55 +0000
parents b79f6002b176
children
line wrap: on
line diff
--- a/interval2maf.xml	Tue Nov 10 18:48:33 2020 +0000
+++ b/interval2maf.xml	Wed Nov 09 12:34:55 2022 +0000
@@ -1,11 +1,12 @@
-<tool id="Interval2Maf1" name="Extract MAF blocks" version="1.0.1+galaxy0">
+<tool id="Interval2Maf1" name="Extract MAF blocks" version="1.0.1+galaxy1" profile="21.05">
     <description>given a set of genomic intervals</description>
     <macros>
             <import>macros.xml</import>
     </macros>
-    <requirements>
-        <expand macro="requirements" />
-    </requirements>
+    <xrefs>
+        <xref type="bio.tools">bx-python</xref>
+    </xrefs>
+    <expand macro="requirements" />
     <command>
     <![CDATA[
     #if $maf_source_type.maf_source == "cached"
@@ -79,7 +80,7 @@
     </outputs>
     <tests>
         <test>
-            <param name="input1" dbkey="hg38" value="interval2maf-in1.bed" />
+            <param name="input1" dbkey="hg38" value="interval2maf-in.bed" />
             <param name="maf_source" value="user" />
             <param name="mafFile" dbkey="hg38" value="interval2maf-in1.maf" />
             <param name="species" value="hg38,mm10,eulFla1" />
@@ -87,7 +88,7 @@
             <output name="out_file1" file="interval2maf-out1.maf" />
         </test>
          <test>
-            <param name="input1" dbkey="hg38" value="interval2maf-in2.bed"/>
+            <param name="input1" dbkey="hg38" value="interval2maf-in.bed"/>
             <param name="maf_source" value="cached"/>
             <param name="mafType" value="TEST"/>
             <param name="species" value="hg38,mm10,eulFla1" />
@@ -95,7 +96,7 @@
             <output name="out_file1" file="interval2maf-out2.maf" />
         </test>
         <test>
-            <param name="input1" dbkey="hg38" value="interval2maf-in3.bed"/>
+            <param name="input1" dbkey="hg38" value="interval2maf-in.bed"/>
             <param name="maf_source" value="cached"/>
             <param name="mafType" value="TEST"/>
             <param name="species" value="hg38,mm10,eulFla1" />