Mercurial > repos > iuc > interval2maf

diff macros.xml @ 0:cfea1d6354db draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/interval2maf/ commit 1db2b3ee758847b8b63f58fb2075961003ff8c22"
author iuc
date Fri, 17 Jul 2020 10:56:42 -0400
parents
children b79f6002b176
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/macros.xml	Fri Jul 17 10:56:42 2020 -0400
@@ -0,0 +1,27 @@
+<macros>
+    <xml name="requirements">
+        <requirement type="package" version="0.8.9">bx-python</requirement>
+        <yield />
+    </xml>
+    <xml name="citations">
+        <citations>
+            <citation type="doi">10.1093/bioinformatics/btr398</citation>
+        </citations>
+    </xml>
+    <xml name="maf_source">
+        <when value="cached">
+            <param name="mafType" type="select" label="Choose alignments">
+                <options from_data_table="maf_indexes">
+                    <filter type="data_meta" ref="input1" key="dbkey" column="2" multiple="True" separator=","/>
+                    <validator type="no_options" message="No alignments are available for the build associated with the selected interval file"/>
+                </options>
+            </param>
+            <param name="species" type="select" display="checkboxes" multiple="true" label="Choose species" help="Select species to be included in the final alignment">
+                <options from_data_table="maf_indexes">
+                    <column name="value" index="3"/>
+                    <filter type="multiple_splitter" column="3" separator=","/>
+                </options>
+            </param>
+        </when>
+    </xml>
+</macros>