Mercurial > repos > iuc > intervene

comparison intervene_pairwise.xml @ 2:33b8c5eedc04 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/intervene commit bf6d77a84f796430a6b4530209d0f21e1d40d25a
author iuc
date Wed, 10 Aug 2022 08:23:43 +0000
parents f5fa293605ca
children 21beb30956c2
comparison
equal deleted inserted replaced
1:08780101bc36 2:33b8c5eedc04
1 <tool id="intervene_pairwise" name="Pairwise intersection" version="@TOOL_VERSION@"> 1 <tool id="intervene_pairwise" name="Pairwise intersection" version="@TOOL_VERSION@+galaxy1">
2 <description>and heatmap for genomic intervals</description> 2 <description>and heatmap for genomic intervals</description>
3 <xrefs>
4 <xref type="bio.tools">intervene</xref>
5 </xrefs>
3 <macros> 6 <macros>
4 <import>macros.xml</import> 7 <import>macros.xml</import>
5 </macros> 8 </macros>
6 <requirements> 9 <requirements>
7 <requirement type="package" version="@TOOL_VERSION@">intervene</requirement> 10 <requirement type="package" version="@TOOL_VERSION@">intervene</requirement>
66 <param argument="--fontsize" type="integer" value="8" label="Label font size"/> 69 <param argument="--fontsize" type="integer" value="8" label="Label font size"/>
67 <param argument="--title" type="text" label="Heatmap main title" value="Pairwise intersection"> 70 <param argument="--title" type="text" label="Heatmap main title" value="Pairwise intersection">
68 <expand macro="quote_sanitizer"/> 71 <expand macro="quote_sanitizer"/>
69 </param> 72 </param>
70 <expand macro="figure_params"/> 73 <expand macro="figure_params"/>
74 <param name="out_matrix" type="boolean" truevalue="true" falsevalue="false" label="Output the intervene matrix file?"/>
71 </inputs> 75 </inputs>
72 <outputs> 76 <outputs>
73 <data name="plot" format="pdf" label="Pairwise plot on ${on_string}" from_work_dir="results/Intervene_pairwise.plot"> 77 <data name="plot" format="pdf" label="Pairwise plot on ${on_string}" from_work_dir="results/Intervene_pairwise.plot">
74 <actions> 78 <actions>
75 <action type="format"> 79 <action type="format">
76 <option type="from_param" name="figtype"/> 80 <option type="from_param" name="figtype"/>
77 </action> 81 </action>
78 </actions> 82 </actions>
79 </data> 83 </data>
84 <data name="matrix" format="txt" label="Matrix on ${on_string}" from_work_dir="results/Intervene_pairwise_frac_matrix.txt">
85 <filter>out_matrix</filter>
86 </data>
80 </outputs> 87 </outputs>
81 <tests> 88 <tests>
82 <test> 89 <test expect_num_outputs="2">
83 <param name="input" value="a.bed,b.bed,c.bed"/> 90 <param name="input" value="a.bed,b.bed,c.bed"/>
91 <param name="out_matrix" value="true"/>
84 <output name="plot" value="bed_pairwise.pdf" compare="sim_size"/> 92 <output name="plot" value="bed_pairwise.pdf" compare="sim_size"/>
93 <output name="matrix" value="matrix.txt" />
85 </test> 94 </test>
86 </tests> 95 </tests>
87 <help><![CDATA[ 96 <help><![CDATA[
88 **What it does** 97 **What it does**
89 98