Mercurial > repos > iuc > isoformswitchanalyzer

diff isoformswitchanalyzer.xml @ 1:2c4e879a81cf draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/isoformswitchanalyzer commit 7d278967f9c8d2c6ce0a8f83be2c444822746bbf
author iuc
date Fri, 19 May 2023 21:26:00 +0000
parents f3fefb6d8254
children 2b0a6af4b85e
line wrap: on
line diff
--- a/isoformswitchanalyzer.xml	Tue Jan 24 18:37:14 2023 +0000
+++ b/isoformswitchanalyzer.xml	Fri May 19 21:26:00 2023 +0000
@@ -25,7 +25,7 @@
                     ln -s '${functionMode.transcriptome}' './transcriptome.fasta.gz' &&
                     #set $transcriptome = './transcriptome.fasta.gz' 
                 #else
-                    ln -s '${functionMode.transcriptome}' './transcriptome.fasta'
+                    ln -s '${functionMode.transcriptome}' './transcriptome.fasta' &&
                     #set $transcriptome = './transcriptome.fasta' 
                 #end if
                 #if $functionMode.genomeAnnotation.is_of_type("gtf.gz"):
@@ -33,7 +33,7 @@
                     #set $annotation = './annotation.gtf.gz' 
                 #else
                     ln -s '${functionMode.genomeAnnotation}' './annotation.gtf' &&
-                        #set $annotation = './annotation.gtf' 
+                    #set $annotation = './annotation.gtf' 
                 #end if
                 mkdir -p 'input_files' &&
                 #if $functionMode.countFiles != 'disabled':
@@ -766,7 +766,7 @@
                 </element>
                 <element name="splicingGenomewide" ftype="pdf">
                     <assert_contents>
-                        <has_size value="68069" delta="300"/>
+                        <has_size value="165752" delta="300"/>
                     </assert_contents>
                 </element>
                 <element name="splicingSummary" ftype="pdf">
@@ -776,12 +776,12 @@
                 </element>
                 <element name="switchGene" ftype="pdf">
                     <assert_contents>
-                        <has_size value="3611" delta="300"/>
+                        <has_size value="18432" delta="300"/>
                     </assert_contents>
                 </element>
                 <element name="volcanoPlot" ftype="pdf">
                     <assert_contents>
-                        <has_size value="3611" delta="300"/>
+                        <has_size value="20147" delta="300"/>
                     </assert_contents>
                 </element>
             </output_collection>
@@ -895,7 +895,7 @@
                 </element>
                 <element name="splicingGenomewide" ftype="pdf">
                     <assert_contents>
-                        <has_size value="68069" delta="300"/>
+                        <has_size value="165752" delta="300"/>
                     </assert_contents>
                 </element>
                 <element name="splicingSummary" ftype="pdf">
@@ -905,12 +905,12 @@
                 </element>
                 <element name="switchGene" ftype="pdf">
                     <assert_contents>
-                        <has_size value="3611" delta="300"/>
+                        <has_size value="18432" delta="300"/>
                     </assert_contents>
                 </element>
                 <element name="volcanoPlot" ftype="pdf">
                     <assert_contents>
-                        <has_size value="3611" delta="300"/>
+                        <has_size value="20147" delta="300"/>
                     </assert_contents>
                 </element>
             </output_collection>