Mercurial > repos > iuc > isoformswitchanalyzer

diff macros.xml @ 5:b3f292d9f35d draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/isoformswitchanalyzer commit 7b7d9892618706dad95641831db8b9f83deb86e1
author iuc
date Fri, 02 Jun 2023 10:27:16 +0000
parents 512d6462f2ce
children 298d81e5e138
line wrap: on
line diff
--- a/macros.xml	Tue May 30 08:39:23 2023 +0000
+++ b/macros.xml	Fri Jun 02 10:27:16 2023 +0000
@@ -1,6 +1,6 @@
 <macros>
     <token name="@TOOL_VERSION@">1.20.0</token>
-    <token name="@SUFFIX_VERSION@">4</token>
+    <token name="@SUFFIX_VERSION@">5</token>
     <xml name="requirements">
         <requirements>
             <requirement type="package" version="@TOOL_VERSION@">bioconductor-isoformswitchanalyzer</requirement>
@@ -65,4 +65,24 @@
         <param argument="onlySwitchingGenes" type="boolean" truevalue="--onlySwitchingGenes" falsevalue="" checked="true" label="Only switching genes" help="Only 
             analyze genes with isoform switches (as indicated by the alpha and dIFcutoff parameters)" />
     </xml>
+    <xml name="macro_inputs" token_format="tabular">
+        <section name="first_factor" title="1: Factor level" expanded="true">
+            <param name="factorLevel" type="text" value="FactorLevel" label="First factor level"
+                help="Only letters, numbers and underscores will be retained in this field">
+                <sanitizer>
+                    <valid initial="string.letters,string.digits"><add value="_" /></valid>
+                </sanitizer>
+            </param>
+            <param name="trans_counts" type="data" format="@FORMAT@" multiple="true" label="Transcript-level expression measurements"/> 
+        </section>
+        <section name="second_factor" title="2: Factor level" expanded="true">
+            <param name="factorLevel" type="text" value="FactorLevel" label="Second factor level"
+                help="Only letters, numbers and underscores will be retained in this field">
+                <sanitizer>
+                    <valid initial="string.letters,string.digits"><add value="_" /></valid>
+                </sanitizer>
+            </param>
+            <param name="trans_counts" type="data" format="@FORMAT@" multiple="true" label="Transcript-level expression measurements"/> 
+        </section>
+    </xml>
 </macros>
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