Mercurial > repos > iuc > ivar_consensus

annotate test-data/covid19/PC00101P_variants.tsv @ 0:f362150bef41 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ivar/ commit 4b0b7fb6c79dcd437392a496a99301d124c9f1dd"
author iuc
date Mon, 30 Mar 2020 06:37:01 -0400
parents
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f362150bef41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ivar/ commit 4b0b7fb6c79dcd437392a496a99301d124c9f1dd"
iuc
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1 REGION POS REF ALT REF_DP REF_RV REF_QUAL ALT_DP ALT_RV ALT_QUAL ALT_FREQ TOTAL_DP PVAL PASS
f362150bef41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ivar/ commit 4b0b7fb6c79dcd437392a496a99301d124c9f1dd"
iuc
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2 NC_045512.2 241 C T 0 0 0 89 89 37 1 89 4.3706e-53 TRUE
f362150bef41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ivar/ commit 4b0b7fb6c79dcd437392a496a99301d124c9f1dd"
iuc
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3 NC_045512.2 693 T C 15 1 39 1 0 37 0.0625 16 0.516129 FALSE
f362150bef41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ivar/ commit 4b0b7fb6c79dcd437392a496a99301d124c9f1dd"
iuc
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4 NC_045512.2 968 G T 13 13 38 1 1 39 0.0714286 14 0.518519 FALSE
f362150bef41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ivar/ commit 4b0b7fb6c79dcd437392a496a99301d124c9f1dd"
iuc
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5 NC_045512.2 2661 A +C 90 20 37 6 0 20 0.0645161 93 0.0163863 FALSE
f362150bef41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ivar/ commit 4b0b7fb6c79dcd437392a496a99301d124c9f1dd"
iuc
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6 NC_045512.2 2880 C A 23 23 37 1 1 38 0.0416667 24 0.5 FALSE
f362150bef41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ivar/ commit 4b0b7fb6c79dcd437392a496a99301d124c9f1dd"
iuc
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7 NC_045512.2 3037 C T 0 0 0 71 62 40 1 71 7.05539e-45 TRUE
f362150bef41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ivar/ commit 4b0b7fb6c79dcd437392a496a99301d124c9f1dd"
iuc
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8 NC_045512.2 4432 G +C 284 0 38 12 0 20 0.041958 286 0.00725964 TRUE
f362150bef41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ivar/ commit 4b0b7fb6c79dcd437392a496a99301d124c9f1dd"
iuc
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9 NC_045512.2 7165 C T 62 0 37 2 0 38 0.03125 64 0.251969 FALSE
f362150bef41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ivar/ commit 4b0b7fb6c79dcd437392a496a99301d124c9f1dd"
iuc
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10 NC_045512.2 14408 C T 0 0 0 163 163 38 1 163 1.65662e-97 TRUE
f362150bef41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ivar/ commit 4b0b7fb6c79dcd437392a496a99301d124c9f1dd"
iuc
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11 NC_045512.2 14844 A G 56 13 37 3 3 27 0.0508475 59 0.118724 FALSE
f362150bef41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ivar/ commit 4b0b7fb6c79dcd437392a496a99301d124c9f1dd"
iuc
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12 NC_045512.2 16501 G +T 10 0 37 1 0 20 0.1 10 0.55 FALSE
f362150bef41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ivar/ commit 4b0b7fb6c79dcd437392a496a99301d124c9f1dd"
iuc
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13 NC_045512.2 17429 A G 20 0 38 1 0 39 0.047619 21 0.512195 FALSE
f362150bef41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ivar/ commit 4b0b7fb6c79dcd437392a496a99301d124c9f1dd"
iuc
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14 NC_045512.2 18154 T G 32 0 38 1 0 20 0.030303 33 0.5 FALSE
f362150bef41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ivar/ commit 4b0b7fb6c79dcd437392a496a99301d124c9f1dd"
iuc
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15 NC_045512.2 18156 T A 32 0 37 1 0 20 0.030303 33 0.5 FALSE
f362150bef41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ivar/ commit 4b0b7fb6c79dcd437392a496a99301d124c9f1dd"
iuc
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16 NC_045512.2 18162 C A 32 0 38 1 0 20 0.030303 33 0.5 FALSE
f362150bef41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ivar/ commit 4b0b7fb6c79dcd437392a496a99301d124c9f1dd"
iuc
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17 NC_045512.2 18191 A G 22 0 37 1 0 39 0.0434783 23 0.5 FALSE
f362150bef41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ivar/ commit 4b0b7fb6c79dcd437392a496a99301d124c9f1dd"
iuc
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18 NC_045512.2 18814 C T 0 0 0 266 216 39 1 266 4.36601e-162 TRUE
f362150bef41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ivar/ commit 4b0b7fb6c79dcd437392a496a99301d124c9f1dd"
iuc
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19 NC_045512.2 19867 A +C 100 0 37 5 0 20 0.0490196 102 0.11521 FALSE
f362150bef41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ivar/ commit 4b0b7fb6c79dcd437392a496a99301d124c9f1dd"
iuc
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20 NC_045512.2 20087 G A 27 0 36 1 0 33 0.0357143 28 0.509091 FALSE
f362150bef41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ivar/ commit 4b0b7fb6c79dcd437392a496a99301d124c9f1dd"
iuc
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21 NC_045512.2 20475 A G 10 10 38 1 1 38 0.0909091 11 0.52381 FALSE
f362150bef41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ivar/ commit 4b0b7fb6c79dcd437392a496a99301d124c9f1dd"
iuc
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diff changeset
22 NC_045512.2 20842 C A 19 0 38 1 0 20 0.05 20 0.512821 FALSE
f362150bef41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ivar/ commit 4b0b7fb6c79dcd437392a496a99301d124c9f1dd"
iuc
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23 NC_045512.2 20843 C A 19 0 37 1 0 20 0.05 20 0.512821 FALSE
f362150bef41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ivar/ commit 4b0b7fb6c79dcd437392a496a99301d124c9f1dd"
iuc
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24 NC_045512.2 20863 C A 18 0 38 1 0 20 0.0526316 19 0.513514 FALSE
f362150bef41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ivar/ commit 4b0b7fb6c79dcd437392a496a99301d124c9f1dd"
iuc
parents:
diff changeset
25 NC_045512.2 21109 A G 9 9 38 1 1 39 0.1 10 0.526316 FALSE
f362150bef41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ivar/ commit 4b0b7fb6c79dcd437392a496a99301d124c9f1dd"
iuc
parents:
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26 NC_045512.2 21174 A G 15 15 38 1 1 20 0.0625 16 0.5 FALSE
f362150bef41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ivar/ commit 4b0b7fb6c79dcd437392a496a99301d124c9f1dd"
iuc
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27 NC_045512.2 22692 T A 30 0 38 1 0 39 0.0322581 31 0.508197 FALSE
f362150bef41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ivar/ commit 4b0b7fb6c79dcd437392a496a99301d124c9f1dd"
iuc
parents:
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28 NC_045512.2 23403 A G 0 0 0 118 0 37 1 118 3.49082e-70 TRUE
f362150bef41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ivar/ commit 4b0b7fb6c79dcd437392a496a99301d124c9f1dd"
iuc
parents:
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29 NC_045512.2 24012 T C 9 9 36 1 1 39 0.1 10 0.526316 FALSE
f362150bef41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ivar/ commit 4b0b7fb6c79dcd437392a496a99301d124c9f1dd"
iuc
parents:
diff changeset
30 NC_045512.2 26834 G A 23 23 37 1 1 37 0.0416667 24 0.5 FALSE
f362150bef41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ivar/ commit 4b0b7fb6c79dcd437392a496a99301d124c9f1dd"
iuc
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31 NC_045512.2 28424 T C 23 0 36 1 0 38 0.0416667 24 0.5 FALSE
f362150bef41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ivar/ commit 4b0b7fb6c79dcd437392a496a99301d124c9f1dd"
iuc
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32 NC_045512.2 29377 T -A 14 13 38 1 0 20 0.0714286 14 0.535714 FALSE
f362150bef41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ivar/ commit 4b0b7fb6c79dcd437392a496a99301d124c9f1dd"
iuc
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33 NC_045512.2 29447 G T 20 20 37 1 1 20 0.047619 21 0.512195 FALSE
f362150bef41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ivar/ commit 4b0b7fb6c79dcd437392a496a99301d124c9f1dd"
iuc
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34 NC_045512.2 29449 G T 18 18 36 1 1 20 0.0526316 19 0.487179 FALSE
f362150bef41 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ivar/ commit 4b0b7fb6c79dcd437392a496a99301d124c9f1dd"
iuc
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35 NC_045512.2 29547 A G 27 2 38 1 0 38 0.0357143 28 0.5 FALSE