Mercurial > repos > iuc > ivar_consensus

comparison test-data/zika/Z52_a_annotated.tsv @ 13:1069f6db0a0e draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ivar/ commit 02d1d482bda9804c69d2d03c890151bc491e5c73
author iuc
date Mon, 13 Feb 2023 17:30:23 +0000
parents 3e4f434a69c6
children
comparison
equal deleted inserted replaced
12:9c5754002592 13:1069f6db0a0e
1 REGION POS REF ALT REF_DP REF_RV REF_QUAL ALT_DP ALT_RV ALT_QUAL ALT_FREQ TOTAL_DP PVAL PASS GFF_FEATURE REF_CODON REF_AA ALT_CODON ALT_AA 1 REGION POS REF ALT REF_DP REF_RV REF_QUAL ALT_DP ALT_RV ALT_QUAL ALT_FREQ TOTAL_DP PVAL PASS GFF_FEATURE REF_CODON REF_AA ALT_CODON ALT_AA POS_AA
2 PRV 350 A T 101 101 36 5 5 35 0.0471698 106 0.0304989 FALSE cds-YP_002790881.1 AAA K TAA * 2 PRV 350 A T 101 101 36 5 5 35 0.0471698 106 0.0304989 FALSE POLY:cds-YP_002790881.1 AAA K TAA * 82
3 PRV 722 C +A 280 234 36 9 0 20 0.0319149 282 0.0349042 FALSE NA NA NA NA NA 3 PRV 722 C +A 280 234 36 9 0 20 0.0319149 282 0.0349042 FALSE NA NA NA NA NA NA
4 PRV 1682 C T 1097 984 37 34 33 37 0.0300088 1133 7.79053e-10 TRUE cds-YP_002790881.1 CTG L TTG L 4 PRV 1682 C T 1097 984 37 34 33 37 0.0300088 1133 7.79053e-10 TRUE POLY:cds-YP_002790881.1 CTG L TTG L 526
5 PRV 1965 T G 302 113 37 63 25 37 0.172603 365 4.41891e-21 TRUE cds-YP_002790881.1 GTT V GGT G 5 PRV 1965 T G 302 113 37 63 25 37 0.172603 365 4.41891e-21 TRUE POLY:cds-YP_002790881.1 GTT V GGT G 620
6 PRV 2702 A G 31 31 36 1 1 23 0.03125 32 0.507937 FALSE cds-YP_002790881.1 AGA R GGA G 6 PRV 2702 A G 31 31 36 1 1 23 0.03125 32 0.507937 FALSE POLY:cds-YP_002790881.1 AGA R GGA G 866
7 PRV 2781 T G 354 70 37 48 8 36 0.117647 408 4.33605e-16 TRUE cds-YP_002790881.1 GTG V GGG G 7 PRV 2781 T G 354 70 37 48 8 36 0.117647 408 4.33605e-16 TRUE POLY:cds-YP_002790881.1 GTG V GGG G 892
8 PRV 2922 C T 264 0 36 11 0 36 0.04 275 0.000440953 TRUE cds-YP_002790881.1 ACT T ATT I 8 PRV 2922 C T 264 0 36 11 0 36 0.04 275 0.000440953 TRUE POLY:cds-YP_002790881.1 ACT T ATT I 939
9 PRV 3148 Y T 0 0 0 1324 264 36 0.77563 1707 0 TRUE cds-YP_002790881.1 GAY X GAT D 9 PRV 3148 Y T 0 0 0 1324 264 36 0.77563 1707 0 TRUE POLY:cds-YP_002790881.1 GAY X GAT D 1014
10 PRV 3148 Y C 0 0 0 381 75 36 0.223199 1707 0 TRUE cds-YP_002790881.1 GAY X GAC D 10 PRV 3148 Y C 0 0 0 381 75 36 0.223199 1707 0 TRUE POLY:cds-YP_002790881.1 GAY X GAC D 1014
11 PRV 3295 A G 1002 1002 35 38 38 33 0.0365385 1040 4.30837e-11 TRUE cds-YP_002790881.1 GCA A GCG A 11 PRV 3295 A G 1002 1002 35 38 38 33 0.0365385 1040 4.30837e-11 TRUE POLY:cds-YP_002790881.1 GCA A GCG A 1063
12 PRV 5680 C T 27 10 44 8 3 46 0.228571 35 0.000596701 TRUE cds-YP_002790881.1 TTC F TTT F 12 PRV 5680 C T 27 10 44 8 3 46 0.228571 35 0.000596701 TRUE POLY:cds-YP_002790881.1 TTC F TTT F 1858
13 PRV 5723 T G 31 31 35 1 1 21 0.03125 32 0.507937 FALSE cds-YP_002790881.1 TGA * GGA G 13 PRV 5723 T G 31 31 35 1 1 21 0.03125 32 0.507937 FALSE POLY:cds-YP_002790881.1 TGA * GGA G 1873
14 PRV 6201 A G 10 0 35 2 0 38 0.166667 12 0.26087 FALSE cds-YP_002790881.1 GAA E GGA G 14 PRV 6201 A G 10 0 35 2 0 38 0.166667 12 0.26087 FALSE POLY:cds-YP_002790881.1 GAA E GGA G 2032
15 PRV 6211 T C 8 0 36 1 0 35 0.111111 9 0.5 FALSE cds-YP_002790881.1 TGT C TGC C 15 PRV 6211 T C 8 0 36 1 0 35 0.111111 9 0.5 FALSE POLY:cds-YP_002790881.1 TGT C TGC C 2035
16 PRV 7916 C T 351 289 36 81 78 37 0.1875 432 5.39655e-27 TRUE cds-YP_002790881.1 CAG Q TAG * 16 PRV 7916 C T 351 289 36 81 78 37 0.1875 432 5.39655e-27 TRUE POLY:cds-YP_002790881.1 CAG Q TAG * 2604
17 PRV 9713 C T 374 0 37 13 0 35 0.0335917 387 0.00010474 TRUE cds-YP_002790881.1 CTT L TTT F 17 PRV 9713 C T 374 0 37 13 0 35 0.0335917 387 0.00010474 TRUE POLY:cds-YP_002790881.1 CTT L TTT F 3203