Mercurial > repos > iuc > ivar_consensus

comparison test-data/zika/Z52.tsv @ 1:a38934e303b9 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ivar/ commit 27fa363aa1289366fd0e888709d022357533e4de"
author iuc
date Sat, 04 Apr 2020 12:25:11 -0400
parents f362150bef41
children
comparison
equal deleted inserted replaced
0:f362150bef41 1:a38934e303b9
1 REGION POS REF ALT REF_DP_Z52_a.tsv REF_RV_Z52_a.tsv REF_QUAL_Z52_a.tsv ALT_DP_Z52_a.tsv ALT_RV_Z52_a.tsv ALT_QUAL_Z52_a.tsv ALT_FREQ_Z52_a.tsv TOTAL_DP_Z52_a.tsv PVAL_Z52_a.tsv PASS_Z52_a.tsv REF_DP_Z52_b.tsv REF_RV_Z52_b.tsv REF_QUAL_Z52_b.tsv ALT_DP_Z52_b.tsv ALT_RV_Z52_b.tsv ALT_QUAL_Z52_b.tsv ALT_FREQ_Z52_b.tsv TOTAL_DP_Z52_b.tsv PVAL_Z52_b.tsv PASS_Z52_b.tsv 1 REGION POS REF ALT GFF_FEATURE REF_CODON REF_AA ALT_CODON ALT_AA REF_DP_./var_0.tsv REF_RV_./var_0.tsv REF_QUAL_./var_0.tsv ALT_DP_./var_0.tsv ALT_RV_./var_0.tsv ALT_QUAL_./var_0.tsv ALT_FREQ_./var_0.tsv TOTAL_DP_./var_0.tsv PVAL_./var_0.tsv PASS_./var_0.tsv REF_DP_./var_1.tsv REF_RV_./var_1.tsv REF_QUAL_./var_1.tsv ALT_DP_./var_1.tsv ALT_RV_./var_1.tsv ALT_QUAL_./var_1.tsv ALT_FREQ_./var_1.tsv TOTAL_DP_./var_1.tsv PVAL_./var_1.tsv PASS_./var_1.tsv
2 PRV 1682 C T 1097 984 37 34 33 37 0.0300088 1133 7.79053e-10 TRUE 1505 1475 37 50 50 37 0.0321543 1555 1.59703e-14 TRUE 2 PRV 1682 C T 1505 1475 37 50 50 37 0.0321543 1555 1.59703e-14 TRUE 1097 984 37 34 33 37 0.0300088 1133 7.79053e-10 TRUE
3 PRV 1965 T G 302 113 37 41 3 35 0.119534 343 2.81419e-14 TRUE 469 28 36 71 1 36 0.131481 540 1.31011e-23 TRUE 3 PRV 1965 T G 469 28 36 71 1 36 0.131481 540 1.31011e-23 TRUE 302 113 37 41 3 35 0.119534 343 2.81419e-14 TRUE
4 PRV 2781 T G 353 70 37 48 8 36 0.117936 407 4.05758e-16 TRUE 404 75 37 35 7 36 0.0788288 444 1.12705e-11 TRUE 4 PRV 2781 T G 404 75 37 35 7 36 0.0788288 444 1.12705e-11 TRUE 353 70 37 48 8 36 0.117936 407 4.05758e-16 TRUE
5 PRV 2922 C T 263 0 36 11 0 36 0.040146 274 0.000431954 TRUE 277 0 36 19 0 34 0.0641892 296 1.46245e-06 TRUE 5 PRV 2922 C T 277 0 36 19 0 34 0.0641892 296 1.46245e-06 TRUE 263 0 36 11 0 36 0.040146 274 0.000431954 TRUE
6 PRV 3148 Y C 0 0 0 381 75 36 0.223199 1707 0 TRUE 0 0 0 679 99 37 0.258765 2624 0 TRUE 6 PRV 3148 Y C 0 0 0 679 99 37 0.258765 2624 0 TRUE 0 0 0 381 75 36 0.223199 1707 0 TRUE
7 PRV 3148 Y T 0 0 0 1324 264 36 0.77563 1707 0 TRUE 0 0 0 1943 271 36 0.740473 2624 0 TRUE 7 PRV 3148 Y T 0 0 0 1943 271 36 0.740473 2624 0 TRUE 0 0 0 1324 264 36 0.77563 1707 0 TRUE
8 PRV 3295 A G 1002 1002 35 38 38 33 0.0365385 1040 4.30837e-11 TRUE 1806 1806 36 69 69 34 0.0368 1875 2.28815e-20 TRUE 8 PRV 3295 A G 1806 1806 36 69 69 34 0.0368 1875 2.28815e-20 TRUE 1002 1002 35 38 38 33 0.0365385 1040 4.30837e-11 TRUE
9 PRV 5680 C T 27 5 44 8 2 45 0.228571 35 0.000596701 TRUE 38 5 50 7 1 49 0.155556 45 0.00133612 TRUE 9 PRV 5680 C T 38 5 50 7 1 49 0.155556 45 0.00133612 TRUE 27 5 44 8 2 45 0.228571 35 0.000596701 TRUE
10 PRV 7916 C T 351 289 36 81 78 37 0.1875 432 5.39655e-27 TRUE 286 227 36 45 38 37 0.135952 331 4.31473e-15 TRUE 10 PRV 7916 C T 286 227 36 45 38 37 0.135952 331 4.31473e-15 TRUE 351 289 36 81 78 37 0.1875 432 5.39655e-27 TRUE
11 PRV 9713 C T 374 0 37 13 0 35 0.0335917 387 0.00010474 TRUE 475 0 37 27 0 36 0.0537849 502 4.66646e-09 TRUE 11 PRV 9713 C T 475 0 37 27 0 36 0.0537849 502 4.66646e-09 TRUE 374 0 37 13 0 35 0.0335917 387 0.00010474 TRUE