Mercurial > repos > iuc > ivar_consensus
diff test-data/zika/Z52_a.tsv @ 1:a38934e303b9 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ivar/ commit 27fa363aa1289366fd0e888709d022357533e4de"
| author | iuc |
|---|---|
| date | Sat, 04 Apr 2020 12:25:11 -0400 |
| parents | f362150bef41 |
| children | 3e4f434a69c6 |
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--- a/test-data/zika/Z52_a.tsv Mon Mar 30 06:37:01 2020 -0400 +++ b/test-data/zika/Z52_a.tsv Sat Apr 04 12:25:11 2020 -0400 @@ -1,17 +1,17 @@ -REGION POS REF ALT REF_DP REF_RV REF_QUAL ALT_DP ALT_RV ALT_QUAL ALT_FREQ TOTAL_DP PVAL PASS -PRV 350 A T 101 101 36 5 5 35 0.0471698 106 0.0304989 FALSE -PRV 722 C +A 280 234 36 9 0 20 0.0319149 282 0.0349042 FALSE -PRV 1682 C T 1097 984 37 34 33 37 0.0300088 1133 7.79053e-10 TRUE -PRV 1965 T G 302 113 37 41 3 35 0.119534 343 2.81419e-14 TRUE -PRV 2702 A G 31 31 36 1 1 23 0.03125 32 0.507937 FALSE -PRV 2781 T G 353 70 37 48 8 36 0.117936 407 4.05758e-16 TRUE -PRV 2922 C T 263 0 36 11 0 36 0.040146 274 0.000431954 TRUE -PRV 3148 Y T 0 0 0 1324 264 36 0.77563 1707 0 TRUE -PRV 3148 Y C 0 0 0 381 75 36 0.223199 1707 0 TRUE -PRV 3295 A G 1002 1002 35 38 38 33 0.0365385 1040 4.30837e-11 TRUE -PRV 5680 C T 27 5 44 8 2 45 0.228571 35 0.000596701 TRUE -PRV 5723 T G 31 31 35 1 1 21 0.03125 32 0.507937 FALSE -PRV 6201 A G 10 0 35 2 0 25 0.166667 12 0.26087 FALSE -PRV 6211 T C 8 0 36 1 0 35 0.111111 9 0.5 FALSE -PRV 7916 C T 351 289 36 81 78 37 0.1875 432 5.39655e-27 TRUE -PRV 9713 C T 374 0 37 13 0 35 0.0335917 387 0.00010474 TRUE +REGION POS REF ALT REF_DP REF_RV REF_QUAL ALT_DP ALT_RV ALT_QUAL ALT_FREQ TOTAL_DP PVAL PASS GFF_FEATURE REF_CODON REF_AA ALT_CODON ALT_AA +PRV 350 A T 101 101 36 5 5 35 0.0471698 106 0.0304989 FALSE NA NA NA NA NA +PRV 722 C +A 280 234 36 9 0 20 0.0319149 282 0.0349042 FALSE NA NA NA NA NA +PRV 1682 C T 1097 984 37 34 33 37 0.0300088 1133 7.79053e-10 TRUE NA NA NA NA NA +PRV 1965 T G 302 113 37 63 25 37 0.172603 365 4.41891e-21 TRUE NA NA NA NA NA +PRV 2702 A G 31 31 36 1 1 23 0.03125 32 0.507937 FALSE NA NA NA NA NA +PRV 2781 T G 354 70 37 48 8 36 0.117647 408 4.33605e-16 TRUE NA NA NA NA NA +PRV 2922 C T 264 0 36 11 0 36 0.04 275 0.000440953 TRUE NA NA NA NA NA +PRV 3148 Y T 0 0 0 1324 264 36 0.77563 1707 0 TRUE NA NA NA NA NA +PRV 3148 Y C 0 0 0 381 75 36 0.223199 1707 0 TRUE NA NA NA NA NA +PRV 3295 A G 1002 1002 35 38 38 33 0.0365385 1040 4.30837e-11 TRUE NA NA NA NA NA +PRV 5680 C T 27 5 44 8 2 46 0.228571 35 0.000596701 TRUE NA NA NA NA NA +PRV 5723 T G 31 31 35 1 1 21 0.03125 32 0.507937 FALSE NA NA NA NA NA +PRV 6201 A G 10 0 35 2 0 38 0.166667 12 0.26087 FALSE NA NA NA NA NA +PRV 6211 T C 8 0 36 1 0 35 0.111111 9 0.5 FALSE NA NA NA NA NA +PRV 7916 C T 351 289 36 81 78 37 0.1875 432 5.39655e-27 TRUE NA NA NA NA NA +PRV 9713 C T 374 0 37 13 0 35 0.0335917 387 0.00010474 TRUE NA NA NA NA NA