Mercurial > repos > iuc > ivar_consensus

#!/usr/bin/env python

import sys


with open(sys.argv[1]) as i:
    bed_data = i.readlines()

sanitized_data = []
try:
    for record in bed_data:
        fields = record.split('\t')
        sanitized_data.append(
            '\t'.join(fields[:4] + ['60'] + fields[5:])
        )
except IndexError:
    pass  # leave column number issue to getmasked
else:
    with open(sys.argv[1], 'w') as o:
        o.writelines(sanitized_data)
author	iuc
date	Thu, 10 Jun 2021 22:07:43 +0000
parents	78bbd17d0703
children	e319b5b65879